Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03090 and HMPREF1058_RS03085 are separated by 180 nucleotides HMPREF1058_RS03085 and HMPREF1058_RS03080 are separated by 123 nucleotides
HMPREF1058_RS03090: HMPREF1058_RS03090 - trigger factor, at 13,022 to 14,377
_RS03090
HMPREF1058_RS03085: HMPREF1058_RS03085 - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 14,558 to 15,229
_RS03085
HMPREF1058_RS03080: HMPREF1058_RS03080 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 15,353 to 16,603
_RS03080
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 13.564 kb on + strand, within HMPREF1058_RS03090 at 13.564 kb on + strand, within HMPREF1058_RS03090 at 13.611 kb on - strand, within HMPREF1058_RS03090 at 13.643 kb on - strand, within HMPREF1058_RS03090 at 13.675 kb on + strand, within HMPREF1058_RS03090 at 13.676 kb on - strand, within HMPREF1058_RS03090 at 13.723 kb on - strand, within HMPREF1058_RS03090 at 13.732 kb on - strand, within HMPREF1058_RS03090 at 13.763 kb on - strand, within HMPREF1058_RS03090 at 13.928 kb on - strand at 13.952 kb on + strand, within HMPREF1058_RS03090 at 13.963 kb on + strand, within HMPREF1058_RS03090 at 13.963 kb on + strand, within HMPREF1058_RS03090 at 13.964 kb on - strand, within HMPREF1058_RS03090 at 14.116 kb on + strand, within HMPREF1058_RS03090 at 14.220 kb on + strand, within HMPREF1058_RS03090 at 14.229 kb on - strand, within HMPREF1058_RS03090 at 14.229 kb on - strand, within HMPREF1058_RS03090 at 14.323 kb on + strand at 14.328 kb on + strand at 14.347 kb on + strand at 14.376 kb on - strand at 14.379 kb on - strand at 14.387 kb on - strand at 14.461 kb on + strand at 14.761 kb on + strand, within HMPREF1058_RS03085 at 14.812 kb on + strand, within HMPREF1058_RS03085 at 14.814 kb on + strand, within HMPREF1058_RS03085 at 14.824 kb on + strand, within HMPREF1058_RS03085 at 15.129 kb on + strand, within HMPREF1058_RS03085 at 15.262 kb on - strand at 15.322 kb on + strand at 15.335 kb on + strand at 15.347 kb on + strand at 15.382 kb on + strand at 15.382 kb on + strand at 15.587 kb on + strand, within HMPREF1058_RS03080 at 15.679 kb on + strand, within HMPREF1058_RS03080 at 15.682 kb on - strand, within HMPREF1058_RS03080 at 15.872 kb on - strand, within HMPREF1058_RS03080 at 15.940 kb on + strand, within HMPREF1058_RS03080 at 15.952 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 16.158 kb on + strand, within HMPREF1058_RS03080 at 16.191 kb on + strand, within HMPREF1058_RS03080 at 16.214 kb on + strand, within HMPREF1058_RS03080 at 16.216 kb on + strand, within HMPREF1058_RS03080 at 16.217 kb on - strand, within HMPREF1058_RS03080
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 13,564 + HMPREF1058_RS03090 0.40 -0.8 13,564 + HMPREF1058_RS03090 0.40 -2.9 13,611 - HMPREF1058_RS03090 0.43 -1.8 13,643 - HMPREF1058_RS03090 0.46 -0.3 13,675 + HMPREF1058_RS03090 0.48 -0.4 13,676 - HMPREF1058_RS03090 0.48 +1.0 13,723 - HMPREF1058_RS03090 0.52 +0.9 13,732 - HMPREF1058_RS03090 0.52 +1.1 13,763 - HMPREF1058_RS03090 0.55 -2.2 13,928 - +0.5 13,952 + HMPREF1058_RS03090 0.69 -1.5 13,963 + HMPREF1058_RS03090 0.69 -0.4 13,963 + HMPREF1058_RS03090 0.69 -1.7 13,964 - HMPREF1058_RS03090 0.69 +1.7 14,116 + HMPREF1058_RS03090 0.81 -2.8 14,220 + HMPREF1058_RS03090 0.88 -0.3 14,229 - HMPREF1058_RS03090 0.89 +1.3 14,229 - HMPREF1058_RS03090 0.89 -0.3 14,323 + +0.1 14,328 + -1.5 14,347 + -0.3 14,376 - -1.3 14,379 - -1.7 14,387 - -0.8 14,461 + -1.3 14,761 + HMPREF1058_RS03085 0.30 -0.8 14,812 + HMPREF1058_RS03085 0.38 +0.0 14,814 + HMPREF1058_RS03085 0.38 -0.3 14,824 + HMPREF1058_RS03085 0.40 -1.5 15,129 + HMPREF1058_RS03085 0.85 -2.8 15,262 - +1.7 15,322 + +0.0 15,335 + +0.4 15,347 + -0.5 15,382 + +0.0 15,382 + +1.8 15,587 + HMPREF1058_RS03080 0.19 +0.9 15,679 + HMPREF1058_RS03080 0.26 +0.4 15,682 - HMPREF1058_RS03080 0.26 +1.7 15,872 - HMPREF1058_RS03080 0.41 -0.3 15,940 + HMPREF1058_RS03080 0.47 -0.2 15,952 + HMPREF1058_RS03080 0.48 +0.6 15,978 + HMPREF1058_RS03080 0.50 +0.5 15,978 + HMPREF1058_RS03080 0.50 -0.4 15,978 + HMPREF1058_RS03080 0.50 +1.0 16,158 + HMPREF1058_RS03080 0.64 +1.9 16,191 + HMPREF1058_RS03080 0.67 +1.0 16,214 + HMPREF1058_RS03080 0.69 +0.8 16,216 + HMPREF1058_RS03080 0.69 +1.3 16,217 - HMPREF1058_RS03080 0.69 +1.0
Or see this region's nucleotide sequence