Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02135

Experiment: D-Mannose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02140 and HMPREF1058_RS02135 are separated by 234 nucleotidesHMPREF1058_RS02135 and HMPREF1058_RS02130 are separated by 109 nucleotides HMPREF1058_RS02140: HMPREF1058_RS02140 - NADP-specific glutamate dehydrogenase, at 272,357 to 273,694 _RS02140 HMPREF1058_RS02135: HMPREF1058_RS02135 - phosphoenolpyruvate synthase, at 273,929 to 276,886 _RS02135 HMPREF1058_RS02130: HMPREF1058_RS02130 - hypothetical protein, at 276,996 to 278,138 _RS02130 Position (kb) 273 274 275 276 277Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 272.959 kb on + strand, within HMPREF1058_RS02140at 273.016 kb on + strand, within HMPREF1058_RS02140at 273.137 kb on - strand, within HMPREF1058_RS02140at 273.174 kb on + strand, within HMPREF1058_RS02140at 273.174 kb on + strand, within HMPREF1058_RS02140at 273.174 kb on + strand, within HMPREF1058_RS02140at 273.175 kb on - strand, within HMPREF1058_RS02140at 273.175 kb on - strand, within HMPREF1058_RS02140at 273.179 kb on + strand, within HMPREF1058_RS02140at 273.337 kb on + strand, within HMPREF1058_RS02140at 273.405 kb on - strand, within HMPREF1058_RS02140at 273.473 kb on + strand, within HMPREF1058_RS02140at 273.529 kb on + strand, within HMPREF1058_RS02140at 273.591 kb on + strandat 273.591 kb on + strandat 273.591 kb on + strandat 273.595 kb on + strandat 273.595 kb on + strandat 273.596 kb on - strandat 273.636 kb on + strandat 273.698 kb on + strandat 273.699 kb on - strandat 273.750 kb on - strandat 273.864 kb on - strandat 273.881 kb on - strandat 273.960 kb on - strandat 274.042 kb on + strandat 274.088 kb on + strandat 274.089 kb on - strandat 274.090 kb on + strandat 274.171 kb on + strandat 274.171 kb on + strandat 274.258 kb on + strand, within HMPREF1058_RS02135at 274.259 kb on - strand, within HMPREF1058_RS02135at 274.337 kb on + strand, within HMPREF1058_RS02135at 274.372 kb on - strand, within HMPREF1058_RS02135at 274.378 kb on + strand, within HMPREF1058_RS02135at 274.379 kb on - strand, within HMPREF1058_RS02135at 274.393 kb on - strand, within HMPREF1058_RS02135at 274.629 kb on - strand, within HMPREF1058_RS02135at 274.634 kb on - strand, within HMPREF1058_RS02135at 274.634 kb on - strand, within HMPREF1058_RS02135at 274.653 kb on + strand, within HMPREF1058_RS02135at 274.654 kb on - strand, within HMPREF1058_RS02135at 274.654 kb on - strand, within HMPREF1058_RS02135at 274.760 kb on - strand, within HMPREF1058_RS02135at 274.779 kb on + strand, within HMPREF1058_RS02135at 274.793 kb on + strand, within HMPREF1058_RS02135at 274.793 kb on + strand, within HMPREF1058_RS02135at 274.793 kb on + strand, within HMPREF1058_RS02135at 274.794 kb on - strand, within HMPREF1058_RS02135at 274.794 kb on - strand, within HMPREF1058_RS02135at 274.794 kb on - strand, within HMPREF1058_RS02135at 274.813 kb on + strand, within HMPREF1058_RS02135at 274.849 kb on - strand, within HMPREF1058_RS02135at 275.113 kb on + strand, within HMPREF1058_RS02135at 275.262 kb on + strand, within HMPREF1058_RS02135at 275.382 kb on + strand, within HMPREF1058_RS02135at 275.382 kb on + strand, within HMPREF1058_RS02135at 275.383 kb on - strand, within HMPREF1058_RS02135at 275.383 kb on - strand, within HMPREF1058_RS02135at 275.564 kb on + strand, within HMPREF1058_RS02135at 275.565 kb on - strand, within HMPREF1058_RS02135at 275.585 kb on + strand, within HMPREF1058_RS02135at 275.589 kb on + strand, within HMPREF1058_RS02135at 275.601 kb on - strand, within HMPREF1058_RS02135at 275.642 kb on + strand, within HMPREF1058_RS02135at 275.643 kb on - strand, within HMPREF1058_RS02135at 275.676 kb on - strand, within HMPREF1058_RS02135at 275.676 kb on - strand, within HMPREF1058_RS02135at 275.678 kb on - strand, within HMPREF1058_RS02135at 275.765 kb on + strand, within HMPREF1058_RS02135at 275.801 kb on + strand, within HMPREF1058_RS02135at 275.841 kb on + strand, within HMPREF1058_RS02135at 275.841 kb on + strand, within HMPREF1058_RS02135at 275.863 kb on + strand, within HMPREF1058_RS02135at 275.863 kb on + strand, within HMPREF1058_RS02135at 275.867 kb on + strand, within HMPREF1058_RS02135at 275.867 kb on - strand, within HMPREF1058_RS02135at 275.868 kb on - strand, within HMPREF1058_RS02135at 275.869 kb on + strand, within HMPREF1058_RS02135at 275.870 kb on - strand, within HMPREF1058_RS02135at 275.875 kb on - strand, within HMPREF1058_RS02135at 275.943 kb on - strand, within HMPREF1058_RS02135at 275.976 kb on - strand, within HMPREF1058_RS02135at 276.095 kb on + strand, within HMPREF1058_RS02135at 276.096 kb on - strand, within HMPREF1058_RS02135at 276.096 kb on - strand, within HMPREF1058_RS02135at 276.096 kb on - strand, within HMPREF1058_RS02135at 276.109 kb on + strand, within HMPREF1058_RS02135at 276.109 kb on - strand, within HMPREF1058_RS02135at 276.110 kb on - strand, within HMPREF1058_RS02135at 276.183 kb on + strand, within HMPREF1058_RS02135at 276.184 kb on - strand, within HMPREF1058_RS02135at 276.256 kb on - strand, within HMPREF1058_RS02135at 276.302 kb on + strand, within HMPREF1058_RS02135at 276.303 kb on - strand, within HMPREF1058_RS02135at 276.365 kb on - strand, within HMPREF1058_RS02135at 276.388 kb on - strand, within HMPREF1058_RS02135at 276.463 kb on + strand, within HMPREF1058_RS02135at 276.464 kb on - strand, within HMPREF1058_RS02135at 276.476 kb on - strand, within HMPREF1058_RS02135at 276.499 kb on - strand, within HMPREF1058_RS02135at 276.541 kb on + strand, within HMPREF1058_RS02135at 276.541 kb on + strand, within HMPREF1058_RS02135at 276.541 kb on + strand, within HMPREF1058_RS02135at 276.542 kb on - strand, within HMPREF1058_RS02135at 276.543 kb on + strand, within HMPREF1058_RS02135at 276.543 kb on + strand, within HMPREF1058_RS02135at 276.543 kb on + strand, within HMPREF1058_RS02135at 276.544 kb on - strand, within HMPREF1058_RS02135at 276.544 kb on - strand, within HMPREF1058_RS02135at 276.549 kb on + strand, within HMPREF1058_RS02135at 276.650 kb on - strandat 276.654 kb on - strandat 276.734 kb on + strandat 276.736 kb on + strandat 276.749 kb on - strandat 276.749 kb on - strandat 276.752 kb on + strandat 276.885 kb on - strandat 276.936 kb on - strandat 276.949 kb on + strandat 276.954 kb on + strandat 277.015 kb on - strandat 277.017 kb on + strandat 277.076 kb on + strandat 277.077 kb on - strandat 277.110 kb on - strandat 277.138 kb on - strand, within HMPREF1058_RS02130at 277.140 kb on - strandat 277.148 kb on + strand, within HMPREF1058_RS02130at 277.149 kb on - strand, within HMPREF1058_RS02130at 277.157 kb on - strand, within HMPREF1058_RS02130at 277.301 kb on + strand, within HMPREF1058_RS02130at 277.330 kb on + strand, within HMPREF1058_RS02130at 277.475 kb on + strand, within HMPREF1058_RS02130at 277.513 kb on - strand, within HMPREF1058_RS02130at 277.740 kb on + strand, within HMPREF1058_RS02130at 277.764 kb on + strand, within HMPREF1058_RS02130at 277.790 kb on - strand, within HMPREF1058_RS02130at 277.801 kb on + strand, within HMPREF1058_RS02130at 277.852 kb on + strand, within HMPREF1058_RS02130at 277.853 kb on - strand, within HMPREF1058_RS02130at 277.856 kb on - strand, within HMPREF1058_RS02130at 277.860 kb on - strand, within HMPREF1058_RS02130at 277.864 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
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272,959 + HMPREF1058_RS02140 0.45 -0.5
273,016 + HMPREF1058_RS02140 0.49 +0.8
273,137 - HMPREF1058_RS02140 0.58 +1.2
273,174 + HMPREF1058_RS02140 0.61 +0.7
273,174 + HMPREF1058_RS02140 0.61 +1.0
273,174 + HMPREF1058_RS02140 0.61 +1.2
273,175 - HMPREF1058_RS02140 0.61 -0.1
273,175 - HMPREF1058_RS02140 0.61 +0.0
273,179 + HMPREF1058_RS02140 0.61 +1.0
273,337 + HMPREF1058_RS02140 0.73 +1.7
273,405 - HMPREF1058_RS02140 0.78 -2.0
273,473 + HMPREF1058_RS02140 0.83 +0.4
273,529 + HMPREF1058_RS02140 0.88 +1.8
273,591 + +1.1
273,591 + +2.8
273,591 + +0.4
273,595 + +1.1
273,595 + +0.4
273,596 - +0.8
273,636 + +0.9
273,698 + +1.5
273,699 - +0.1
273,750 - +0.9
273,864 - -0.3
273,881 - -2.1
273,960 - -3.9
274,042 + +1.9
274,088 + -1.0
274,089 - -1.5
274,090 + -0.9
274,171 + -0.5
274,171 + -0.1
274,258 + HMPREF1058_RS02135 0.11 -1.5
274,259 - HMPREF1058_RS02135 0.11 -0.9
274,337 + HMPREF1058_RS02135 0.14 +0.6
274,372 - HMPREF1058_RS02135 0.15 -0.4
274,378 + HMPREF1058_RS02135 0.15 -1.3
274,379 - HMPREF1058_RS02135 0.15 -3.1
274,393 - HMPREF1058_RS02135 0.16 -0.3
274,629 - HMPREF1058_RS02135 0.24 -2.2
274,634 - HMPREF1058_RS02135 0.24 -0.6
274,634 - HMPREF1058_RS02135 0.24 -1.9
274,653 + HMPREF1058_RS02135 0.24 -1.7
274,654 - HMPREF1058_RS02135 0.25 -0.5
274,654 - HMPREF1058_RS02135 0.25 -1.5
274,760 - HMPREF1058_RS02135 0.28 -3.5
274,779 + HMPREF1058_RS02135 0.29 -1.4
274,793 + HMPREF1058_RS02135 0.29 -0.6
274,793 + HMPREF1058_RS02135 0.29 +0.9
274,793 + HMPREF1058_RS02135 0.29 +1.1
274,794 - HMPREF1058_RS02135 0.29 -2.1
274,794 - HMPREF1058_RS02135 0.29 -0.7
274,794 - HMPREF1058_RS02135 0.29 -2.4
274,813 + HMPREF1058_RS02135 0.30 -0.7
274,849 - HMPREF1058_RS02135 0.31 -0.8
275,113 + HMPREF1058_RS02135 0.40 -2.6
275,262 + HMPREF1058_RS02135 0.45 -0.8
275,382 + HMPREF1058_RS02135 0.49 -1.7
275,382 + HMPREF1058_RS02135 0.49 -2.5
275,383 - HMPREF1058_RS02135 0.49 -1.5
275,383 - HMPREF1058_RS02135 0.49 -1.0
275,564 + HMPREF1058_RS02135 0.55 -1.7
275,565 - HMPREF1058_RS02135 0.55 -3.9
275,585 + HMPREF1058_RS02135 0.56 -0.8
275,589 + HMPREF1058_RS02135 0.56 -2.3
275,601 - HMPREF1058_RS02135 0.57 -2.7
275,642 + HMPREF1058_RS02135 0.58 -2.4
275,643 - HMPREF1058_RS02135 0.58 -1.3
275,676 - HMPREF1058_RS02135 0.59 -2.3
275,676 - HMPREF1058_RS02135 0.59 -0.1
275,678 - HMPREF1058_RS02135 0.59 -1.3
275,765 + HMPREF1058_RS02135 0.62 -3.2
275,801 + HMPREF1058_RS02135 0.63 -3.4
275,841 + HMPREF1058_RS02135 0.65 -2.6
275,841 + HMPREF1058_RS02135 0.65 -1.6
275,863 + HMPREF1058_RS02135 0.65 -1.9
275,863 + HMPREF1058_RS02135 0.65 -3.7
275,867 + HMPREF1058_RS02135 0.66 -2.5
275,867 - HMPREF1058_RS02135 0.66 -1.9
275,868 - HMPREF1058_RS02135 0.66 -2.0
275,869 + HMPREF1058_RS02135 0.66 -2.4
275,870 - HMPREF1058_RS02135 0.66 -3.3
275,875 - HMPREF1058_RS02135 0.66 -1.4
275,943 - HMPREF1058_RS02135 0.68 -1.9
275,976 - HMPREF1058_RS02135 0.69 -1.7
276,095 + HMPREF1058_RS02135 0.73 -1.8
276,096 - HMPREF1058_RS02135 0.73 -1.1
276,096 - HMPREF1058_RS02135 0.73 -1.5
276,096 - HMPREF1058_RS02135 0.73 -3.1
276,109 + HMPREF1058_RS02135 0.74 -0.3
276,109 - HMPREF1058_RS02135 0.74 -2.3
276,110 - HMPREF1058_RS02135 0.74 -0.3
276,183 + HMPREF1058_RS02135 0.76 -4.0
276,184 - HMPREF1058_RS02135 0.76 -1.5
276,256 - HMPREF1058_RS02135 0.79 -2.9
276,302 + HMPREF1058_RS02135 0.80 -0.5
276,303 - HMPREF1058_RS02135 0.80 -1.5
276,365 - HMPREF1058_RS02135 0.82 -2.3
276,388 - HMPREF1058_RS02135 0.83 -3.4
276,463 + HMPREF1058_RS02135 0.86 +0.5
276,464 - HMPREF1058_RS02135 0.86 -3.7
276,476 - HMPREF1058_RS02135 0.86 -0.0
276,499 - HMPREF1058_RS02135 0.87 -2.6
276,541 + HMPREF1058_RS02135 0.88 -1.5
276,541 + HMPREF1058_RS02135 0.88 +0.2
276,541 + HMPREF1058_RS02135 0.88 -1.8
276,542 - HMPREF1058_RS02135 0.88 -0.9
276,543 + HMPREF1058_RS02135 0.88 -3.2
276,543 + HMPREF1058_RS02135 0.88 -1.4
276,543 + HMPREF1058_RS02135 0.88 -1.2
276,544 - HMPREF1058_RS02135 0.88 -2.3
276,544 - HMPREF1058_RS02135 0.88 -1.3
276,549 + HMPREF1058_RS02135 0.89 -2.4
276,650 - -0.9
276,654 - -0.5
276,734 + -3.1
276,736 + -0.3
276,749 - -1.5
276,749 - -2.7
276,752 + -2.3
276,885 - +2.0
276,936 - +2.3
276,949 + +0.9
276,954 + -0.8
277,015 - +1.3
277,017 + -1.0
277,076 + -0.7
277,077 - -0.5
277,110 - -0.3
277,138 - HMPREF1058_RS02130 0.12 +0.7
277,140 - -1.0
277,148 + HMPREF1058_RS02130 0.13 -1.1
277,149 - HMPREF1058_RS02130 0.13 -0.2
277,157 - HMPREF1058_RS02130 0.14 +0.4
277,301 + HMPREF1058_RS02130 0.27 -0.5
277,330 + HMPREF1058_RS02130 0.29 -0.9
277,475 + HMPREF1058_RS02130 0.42 -0.4
277,513 - HMPREF1058_RS02130 0.45 +0.6
277,740 + HMPREF1058_RS02130 0.65 -0.1
277,764 + HMPREF1058_RS02130 0.67 -0.2
277,790 - HMPREF1058_RS02130 0.69 +1.3
277,801 + HMPREF1058_RS02130 0.70 -0.3
277,852 + HMPREF1058_RS02130 0.75 +0.1
277,853 - HMPREF1058_RS02130 0.75 -0.8
277,856 - HMPREF1058_RS02130 0.75 +1.1
277,860 - HMPREF1058_RS02130 0.76 +0.3
277,864 + -1.5

Or see this region's nucleotide sequence