Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01650 and HMPREF1058_RS01645 are separated by 71 nucleotides HMPREF1058_RS01645 and HMPREF1058_RS01640 are separated by 101 nucleotides HMPREF1058_RS01640 and HMPREF1058_RS01635 are separated by 16 nucleotides HMPREF1058_RS01635 and HMPREF1058_RS01630 are separated by 52 nucleotides
HMPREF1058_RS01650: HMPREF1058_RS01650 - hypothetical protein, at 76,118 to 76,441
_RS01650
HMPREF1058_RS01645: HMPREF1058_RS01645 - RNA methyltransferase, at 76,513 to 77,268
_RS01645
HMPREF1058_RS01640: HMPREF1058_RS01640 - BamA/TamA family outer membrane protein, at 77,370 to 79,694
_RS01640
HMPREF1058_RS01635: HMPREF1058_RS01635 - hypothetical protein, at 79,711 to 79,959
_RS01635
HMPREF1058_RS01630: HMPREF1058_RS01630 - hypothetical protein, at 80,012 to 80,596
_RS01630
Position (kb) 77
78
79
80 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 76.378 kb on + strand, within HMPREF1058_RS01650 at 76.380 kb on + strand, within HMPREF1058_RS01650 at 76.381 kb on - strand, within HMPREF1058_RS01650 at 76.443 kb on - strand at 76.444 kb on + strand at 76.444 kb on + strand at 76.444 kb on + strand at 76.445 kb on - strand at 76.445 kb on - strand at 76.445 kb on - strand at 76.445 kb on - strand at 76.491 kb on + strand at 76.505 kb on + strand at 76.614 kb on + strand, within HMPREF1058_RS01645 at 76.617 kb on - strand, within HMPREF1058_RS01645 at 76.619 kb on - strand, within HMPREF1058_RS01645 at 76.630 kb on + strand, within HMPREF1058_RS01645 at 76.847 kb on + strand, within HMPREF1058_RS01645 at 76.848 kb on - strand, within HMPREF1058_RS01645 at 76.878 kb on + strand, within HMPREF1058_RS01645 at 76.879 kb on - strand, within HMPREF1058_RS01645 at 76.879 kb on - strand, within HMPREF1058_RS01645 at 76.939 kb on + strand, within HMPREF1058_RS01645 at 76.940 kb on - strand, within HMPREF1058_RS01645 at 77.005 kb on + strand, within HMPREF1058_RS01645 at 77.006 kb on - strand, within HMPREF1058_RS01645 at 77.282 kb on + strand at 77.315 kb on + strand at 77.329 kb on - strand at 77.329 kb on - strand at 77.340 kb on + strand at 77.392 kb on - strand at 77.392 kb on - strand at 77.393 kb on + strand at 77.393 kb on + strand at 77.394 kb on - strand at 77.394 kb on - strand at 77.394 kb on - strand at 77.394 kb on - strand at 77.395 kb on + strand at 77.396 kb on - strand at 77.396 kb on - strand at 77.396 kb on - strand at 77.396 kb on - strand at 77.405 kb on + strand at 77.406 kb on - strand at 77.408 kb on + strand at 77.417 kb on - strand at 77.417 kb on - strand at 77.460 kb on + strand at 77.516 kb on - strand at 77.528 kb on + strand at 77.572 kb on + strand at 77.572 kb on + strand at 77.576 kb on + strand at 77.576 kb on + strand at 77.582 kb on + strand at 77.586 kb on + strand at 77.661 kb on + strand, within HMPREF1058_RS01640 at 77.661 kb on + strand, within HMPREF1058_RS01640 at 77.662 kb on - strand, within HMPREF1058_RS01640 at 77.714 kb on + strand, within HMPREF1058_RS01640 at 77.714 kb on + strand, within HMPREF1058_RS01640 at 77.715 kb on - strand, within HMPREF1058_RS01640 at 77.715 kb on - strand, within HMPREF1058_RS01640 at 77.715 kb on - strand, within HMPREF1058_RS01640 at 77.724 kb on + strand, within HMPREF1058_RS01640 at 77.724 kb on + strand, within HMPREF1058_RS01640 at 77.725 kb on - strand, within HMPREF1058_RS01640 at 77.784 kb on + strand, within HMPREF1058_RS01640 at 77.808 kb on + strand, within HMPREF1058_RS01640 at 77.810 kb on + strand, within HMPREF1058_RS01640 at 77.810 kb on + strand, within HMPREF1058_RS01640 at 77.815 kb on + strand, within HMPREF1058_RS01640 at 77.815 kb on + strand, within HMPREF1058_RS01640 at 77.829 kb on + strand, within HMPREF1058_RS01640 at 77.829 kb on + strand, within HMPREF1058_RS01640 at 77.845 kb on + strand at 77.850 kb on - strand, within HMPREF1058_RS01640 at 77.862 kb on - strand, within HMPREF1058_RS01640 at 77.974 kb on - strand, within HMPREF1058_RS01640 at 78.001 kb on - strand, within HMPREF1058_RS01640 at 78.023 kb on + strand, within HMPREF1058_RS01640 at 78.052 kb on + strand, within HMPREF1058_RS01640 at 78.052 kb on + strand, within HMPREF1058_RS01640 at 78.095 kb on + strand, within HMPREF1058_RS01640 at 78.096 kb on - strand, within HMPREF1058_RS01640 at 78.102 kb on + strand, within HMPREF1058_RS01640 at 78.161 kb on + strand, within HMPREF1058_RS01640 at 78.200 kb on + strand, within HMPREF1058_RS01640 at 78.201 kb on - strand, within HMPREF1058_RS01640 at 78.201 kb on - strand, within HMPREF1058_RS01640 at 78.201 kb on - strand, within HMPREF1058_RS01640 at 78.203 kb on + strand, within HMPREF1058_RS01640 at 78.203 kb on + strand, within HMPREF1058_RS01640 at 78.203 kb on + strand, within HMPREF1058_RS01640 at 78.203 kb on + strand, within HMPREF1058_RS01640 at 78.204 kb on - strand, within HMPREF1058_RS01640 at 78.204 kb on - strand, within HMPREF1058_RS01640 at 78.204 kb on - strand, within HMPREF1058_RS01640 at 78.207 kb on + strand, within HMPREF1058_RS01640 at 78.207 kb on + strand, within HMPREF1058_RS01640 at 78.208 kb on - strand, within HMPREF1058_RS01640 at 78.208 kb on - strand, within HMPREF1058_RS01640 at 78.210 kb on + strand, within HMPREF1058_RS01640 at 78.211 kb on - strand, within HMPREF1058_RS01640 at 78.279 kb on + strand, within HMPREF1058_RS01640 at 78.279 kb on + strand, within HMPREF1058_RS01640 at 78.280 kb on - strand, within HMPREF1058_RS01640 at 78.281 kb on + strand, within HMPREF1058_RS01640 at 78.345 kb on - strand, within HMPREF1058_RS01640 at 78.400 kb on + strand, within HMPREF1058_RS01640 at 78.401 kb on - strand, within HMPREF1058_RS01640 at 78.453 kb on - strand, within HMPREF1058_RS01640 at 78.508 kb on + strand, within HMPREF1058_RS01640 at 78.531 kb on - strand, within HMPREF1058_RS01640 at 78.606 kb on + strand, within HMPREF1058_RS01640 at 78.689 kb on + strand, within HMPREF1058_RS01640 at 78.713 kb on - strand, within HMPREF1058_RS01640 at 78.776 kb on + strand, within HMPREF1058_RS01640 at 78.776 kb on + strand, within HMPREF1058_RS01640 at 78.777 kb on - strand, within HMPREF1058_RS01640 at 78.798 kb on - strand, within HMPREF1058_RS01640 at 78.798 kb on - strand, within HMPREF1058_RS01640 at 78.831 kb on + strand, within HMPREF1058_RS01640 at 78.836 kb on - strand, within HMPREF1058_RS01640 at 78.837 kb on + strand, within HMPREF1058_RS01640 at 78.837 kb on + strand, within HMPREF1058_RS01640 at 78.838 kb on - strand, within HMPREF1058_RS01640 at 78.839 kb on + strand, within HMPREF1058_RS01640 at 78.839 kb on + strand, within HMPREF1058_RS01640 at 78.840 kb on - strand, within HMPREF1058_RS01640 at 78.840 kb on - strand, within HMPREF1058_RS01640 at 78.840 kb on - strand, within HMPREF1058_RS01640 at 78.840 kb on - strand, within HMPREF1058_RS01640 at 78.845 kb on + strand, within HMPREF1058_RS01640 at 78.954 kb on - strand, within HMPREF1058_RS01640 at 78.957 kb on + strand, within HMPREF1058_RS01640 at 78.958 kb on - strand, within HMPREF1058_RS01640 at 78.960 kb on - strand, within HMPREF1058_RS01640 at 79.010 kb on + strand, within HMPREF1058_RS01640 at 79.042 kb on + strand, within HMPREF1058_RS01640 at 79.042 kb on + strand, within HMPREF1058_RS01640 at 79.043 kb on - strand, within HMPREF1058_RS01640 at 79.095 kb on + strand, within HMPREF1058_RS01640 at 79.095 kb on + strand, within HMPREF1058_RS01640 at 79.096 kb on - strand, within HMPREF1058_RS01640 at 79.125 kb on + strand at 79.194 kb on - strand, within HMPREF1058_RS01640 at 79.279 kb on + strand, within HMPREF1058_RS01640 at 79.294 kb on + strand, within HMPREF1058_RS01640 at 79.303 kb on + strand, within HMPREF1058_RS01640 at 79.317 kb on + strand, within HMPREF1058_RS01640 at 79.318 kb on - strand at 79.320 kb on - strand, within HMPREF1058_RS01640 at 79.350 kb on - strand, within HMPREF1058_RS01640 at 79.369 kb on + strand, within HMPREF1058_RS01640 at 79.393 kb on - strand, within HMPREF1058_RS01640 at 79.510 kb on - strand at 79.531 kb on - strand at 79.560 kb on + strand at 79.598 kb on - strand at 79.703 kb on + strand at 79.708 kb on - strand at 79.711 kb on - strand at 79.711 kb on - strand at 79.735 kb on + strand at 79.735 kb on + strand at 79.736 kb on - strand, within HMPREF1058_RS01635 at 79.809 kb on + strand, within HMPREF1058_RS01635 at 79.867 kb on + strand, within HMPREF1058_RS01635 at 79.867 kb on + strand, within HMPREF1058_RS01635 at 79.868 kb on - strand, within HMPREF1058_RS01635 at 79.868 kb on - strand, within HMPREF1058_RS01635 at 79.868 kb on - strand, within HMPREF1058_RS01635 at 79.872 kb on - strand, within HMPREF1058_RS01635 at 79.877 kb on - strand, within HMPREF1058_RS01635 at 79.993 kb on - strand at 79.995 kb on - strand at 79.999 kb on + strand at 80.025 kb on + strand at 80.026 kb on - strand at 80.034 kb on - strand at 80.089 kb on + strand, within HMPREF1058_RS01630 at 80.111 kb on - strand, within HMPREF1058_RS01630 at 80.147 kb on + strand, within HMPREF1058_RS01630 at 80.148 kb on - strand, within HMPREF1058_RS01630 at 80.150 kb on + strand, within HMPREF1058_RS01630 at 80.181 kb on + strand, within HMPREF1058_RS01630 at 80.200 kb on - strand, within HMPREF1058_RS01630 at 80.239 kb on - strand, within HMPREF1058_RS01630 at 80.284 kb on + strand, within HMPREF1058_RS01630 at 80.284 kb on + strand, within HMPREF1058_RS01630 at 80.393 kb on + strand, within HMPREF1058_RS01630 at 80.394 kb on - strand, within HMPREF1058_RS01630 at 80.394 kb on - strand, within HMPREF1058_RS01630 at 80.412 kb on - strand, within HMPREF1058_RS01630 at 80.412 kb on - strand, within HMPREF1058_RS01630 at 80.429 kb on + strand, within HMPREF1058_RS01630 at 80.431 kb on + strand, within HMPREF1058_RS01630 at 80.443 kb on + strand, within HMPREF1058_RS01630 at 80.444 kb on - strand, within HMPREF1058_RS01630 at 80.464 kb on - strand, within HMPREF1058_RS01630 at 80.478 kb on + strand, within HMPREF1058_RS01630 at 80.524 kb on + strand, within HMPREF1058_RS01630 at 80.526 kb on + strand, within HMPREF1058_RS01630 at 80.527 kb on - strand, within HMPREF1058_RS01630 at 80.529 kb on + strand, within HMPREF1058_RS01630 at 80.530 kb on - strand, within HMPREF1058_RS01630 at 80.552 kb on - strand at 80.594 kb on + strand at 80.601 kb on - strand at 80.636 kb on + strand at 80.637 kb on - strand at 80.639 kb on + strand at 80.640 kb on - strand at 80.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 76,378 + HMPREF1058_RS01650 0.80 -1.1 76,380 + HMPREF1058_RS01650 0.81 -3.0 76,381 - HMPREF1058_RS01650 0.81 -2.8 76,443 - -0.8 76,444 + +0.1 76,444 + -1.1 76,444 + -0.4 76,445 - +2.0 76,445 - -0.6 76,445 - +0.3 76,445 - -0.2 76,491 + -0.3 76,505 + +0.6 76,614 + HMPREF1058_RS01645 0.13 -0.5 76,617 - HMPREF1058_RS01645 0.14 +1.3 76,619 - HMPREF1058_RS01645 0.14 -1.5 76,630 + HMPREF1058_RS01645 0.15 -0.1 76,847 + HMPREF1058_RS01645 0.44 +0.1 76,848 - HMPREF1058_RS01645 0.44 -1.5 76,878 + HMPREF1058_RS01645 0.48 +1.9 76,879 - HMPREF1058_RS01645 0.48 -0.7 76,879 - HMPREF1058_RS01645 0.48 +0.0 76,939 + HMPREF1058_RS01645 0.56 +0.2 76,940 - HMPREF1058_RS01645 0.56 -1.4 77,005 + HMPREF1058_RS01645 0.65 +0.3 77,006 - HMPREF1058_RS01645 0.65 -4.0 77,282 + -0.7 77,315 + +0.6 77,329 - -0.7 77,329 - -2.7 77,340 + +0.8 77,392 - -1.6 77,392 - -3.1 77,393 + -2.9 77,393 + -1.1 77,394 - -2.5 77,394 - -3.4 77,394 - -3.2 77,394 - -2.0 77,395 + -0.7 77,396 - +0.6 77,396 - -1.7 77,396 - -2.3 77,396 - -3.2 77,405 + -2.3 77,406 - -2.0 77,408 + -2.6 77,417 - +1.3 77,417 - +0.7 77,460 + -3.0 77,516 - +0.1 77,528 + -2.5 77,572 + -0.9 77,572 + -0.7 77,576 + -0.9 77,576 + -2.1 77,582 + -0.8 77,586 + -1.6 77,661 + HMPREF1058_RS01640 0.13 -3.1 77,661 + HMPREF1058_RS01640 0.13 -0.9 77,662 - HMPREF1058_RS01640 0.13 +0.9 77,714 + HMPREF1058_RS01640 0.15 -2.2 77,714 + HMPREF1058_RS01640 0.15 -1.9 77,715 - HMPREF1058_RS01640 0.15 -2.5 77,715 - HMPREF1058_RS01640 0.15 -1.4 77,715 - HMPREF1058_RS01640 0.15 -3.5 77,724 + HMPREF1058_RS01640 0.15 -2.0 77,724 + HMPREF1058_RS01640 0.15 -1.3 77,725 - HMPREF1058_RS01640 0.15 -0.7 77,784 + HMPREF1058_RS01640 0.18 -1.7 77,808 + HMPREF1058_RS01640 0.19 -3.2 77,810 + HMPREF1058_RS01640 0.19 -1.9 77,810 + HMPREF1058_RS01640 0.19 -0.6 77,815 + HMPREF1058_RS01640 0.19 -2.5 77,815 + HMPREF1058_RS01640 0.19 -0.1 77,829 + HMPREF1058_RS01640 0.20 -2.3 77,829 + HMPREF1058_RS01640 0.20 -2.3 77,845 + +0.3 77,850 - HMPREF1058_RS01640 0.21 -2.0 77,862 - HMPREF1058_RS01640 0.21 -2.0 77,974 - HMPREF1058_RS01640 0.26 -0.7 78,001 - HMPREF1058_RS01640 0.27 -1.4 78,023 + HMPREF1058_RS01640 0.28 -2.9 78,052 + HMPREF1058_RS01640 0.29 -3.3 78,052 + HMPREF1058_RS01640 0.29 -2.8 78,095 + HMPREF1058_RS01640 0.31 -0.9 78,096 - HMPREF1058_RS01640 0.31 -1.6 78,102 + HMPREF1058_RS01640 0.31 -3.1 78,161 + HMPREF1058_RS01640 0.34 -4.6 78,200 + HMPREF1058_RS01640 0.36 -1.6 78,201 - HMPREF1058_RS01640 0.36 -0.1 78,201 - HMPREF1058_RS01640 0.36 -2.6 78,201 - HMPREF1058_RS01640 0.36 -0.4 78,203 + HMPREF1058_RS01640 0.36 -0.6 78,203 + HMPREF1058_RS01640 0.36 -2.1 78,203 + HMPREF1058_RS01640 0.36 -2.2 78,203 + HMPREF1058_RS01640 0.36 -1.4 78,204 - HMPREF1058_RS01640 0.36 -1.7 78,204 - HMPREF1058_RS01640 0.36 -1.3 78,204 - HMPREF1058_RS01640 0.36 -1.8 78,207 + HMPREF1058_RS01640 0.36 -1.6 78,207 + HMPREF1058_RS01640 0.36 -0.7 78,208 - HMPREF1058_RS01640 0.36 -0.8 78,208 - HMPREF1058_RS01640 0.36 -2.5 78,210 + HMPREF1058_RS01640 0.36 -1.7 78,211 - HMPREF1058_RS01640 0.36 -2.1 78,279 + HMPREF1058_RS01640 0.39 -3.2 78,279 + HMPREF1058_RS01640 0.39 -3.5 78,280 - HMPREF1058_RS01640 0.39 +0.3 78,281 + HMPREF1058_RS01640 0.39 -2.4 78,345 - HMPREF1058_RS01640 0.42 +0.2 78,400 + HMPREF1058_RS01640 0.44 -3.6 78,401 - HMPREF1058_RS01640 0.44 -1.4 78,453 - HMPREF1058_RS01640 0.47 -2.9 78,508 + HMPREF1058_RS01640 0.49 -1.2 78,531 - HMPREF1058_RS01640 0.50 -2.4 78,606 + HMPREF1058_RS01640 0.53 -2.4 78,689 + HMPREF1058_RS01640 0.57 -2.3 78,713 - HMPREF1058_RS01640 0.58 +0.9 78,776 + HMPREF1058_RS01640 0.60 +0.3 78,776 + HMPREF1058_RS01640 0.60 -0.9 78,777 - HMPREF1058_RS01640 0.61 -1.8 78,798 - HMPREF1058_RS01640 0.61 -3.5 78,798 - HMPREF1058_RS01640 0.61 -0.9 78,831 + HMPREF1058_RS01640 0.63 -1.2 78,836 - HMPREF1058_RS01640 0.63 +0.3 78,837 + HMPREF1058_RS01640 0.63 -2.4 78,837 + HMPREF1058_RS01640 0.63 -0.9 78,838 - HMPREF1058_RS01640 0.63 +0.1 78,839 + HMPREF1058_RS01640 0.63 +1.9 78,839 + HMPREF1058_RS01640 0.63 -3.3 78,840 - HMPREF1058_RS01640 0.63 -1.7 78,840 - HMPREF1058_RS01640 0.63 -2.8 78,840 - HMPREF1058_RS01640 0.63 -1.1 78,840 - HMPREF1058_RS01640 0.63 -0.3 78,845 + HMPREF1058_RS01640 0.63 -0.1 78,954 - HMPREF1058_RS01640 0.68 -2.2 78,957 + HMPREF1058_RS01640 0.68 -1.9 78,958 - HMPREF1058_RS01640 0.68 +0.1 78,960 - HMPREF1058_RS01640 0.68 -2.1 79,010 + HMPREF1058_RS01640 0.71 -1.7 79,042 + HMPREF1058_RS01640 0.72 -0.9 79,042 + HMPREF1058_RS01640 0.72 -1.3 79,043 - HMPREF1058_RS01640 0.72 -0.9 79,095 + HMPREF1058_RS01640 0.74 -3.4 79,095 + HMPREF1058_RS01640 0.74 -1.6 79,096 - HMPREF1058_RS01640 0.74 +0.6 79,125 + -0.7 79,194 - HMPREF1058_RS01640 0.78 -1.4 79,279 + HMPREF1058_RS01640 0.82 -1.7 79,294 + HMPREF1058_RS01640 0.83 -0.7 79,303 + HMPREF1058_RS01640 0.83 -4.0 79,317 + HMPREF1058_RS01640 0.84 -4.4 79,318 - -0.4 79,320 - HMPREF1058_RS01640 0.84 +0.6 79,350 - HMPREF1058_RS01640 0.85 -1.1 79,369 + HMPREF1058_RS01640 0.86 -2.4 79,393 - HMPREF1058_RS01640 0.87 -1.9 79,510 - -1.3 79,531 - -1.6 79,560 + -3.4 79,598 - -2.0 79,703 + -1.8 79,708 - -1.0 79,711 - -0.2 79,711 - +0.3 79,735 + -0.0 79,735 + -1.0 79,736 - HMPREF1058_RS01635 0.10 +0.0 79,809 + HMPREF1058_RS01635 0.39 -0.8 79,867 + HMPREF1058_RS01635 0.63 -1.3 79,867 + HMPREF1058_RS01635 0.63 +0.3 79,868 - HMPREF1058_RS01635 0.63 -1.1 79,868 - HMPREF1058_RS01635 0.63 -2.4 79,868 - HMPREF1058_RS01635 0.63 -0.0 79,872 - HMPREF1058_RS01635 0.65 +0.1 79,877 - HMPREF1058_RS01635 0.67 +0.9 79,993 - -0.1 79,995 - -1.4 79,999 + +0.0 80,025 + -0.3 80,026 - +0.5 80,034 - +2.6 80,089 + HMPREF1058_RS01630 0.13 +0.1 80,111 - HMPREF1058_RS01630 0.17 -0.1 80,147 + HMPREF1058_RS01630 0.23 +0.6 80,148 - HMPREF1058_RS01630 0.23 +0.1 80,150 + HMPREF1058_RS01630 0.24 -1.1 80,181 + HMPREF1058_RS01630 0.29 -0.9 80,200 - HMPREF1058_RS01630 0.32 +0.7 80,239 - HMPREF1058_RS01630 0.39 +0.6 80,284 + HMPREF1058_RS01630 0.46 -0.2 80,284 + HMPREF1058_RS01630 0.46 +0.3 80,393 + HMPREF1058_RS01630 0.65 -0.5 80,394 - HMPREF1058_RS01630 0.65 +0.3 80,394 - HMPREF1058_RS01630 0.65 -0.1 80,412 - HMPREF1058_RS01630 0.68 +1.5 80,412 - HMPREF1058_RS01630 0.68 +0.0 80,429 + HMPREF1058_RS01630 0.71 -0.4 80,431 + HMPREF1058_RS01630 0.72 -0.6 80,443 + HMPREF1058_RS01630 0.74 +0.1 80,444 - HMPREF1058_RS01630 0.74 +0.5 80,464 - HMPREF1058_RS01630 0.77 +0.2 80,478 + HMPREF1058_RS01630 0.80 +0.0 80,524 + HMPREF1058_RS01630 0.88 -0.6 80,526 + HMPREF1058_RS01630 0.88 -0.5 80,527 - HMPREF1058_RS01630 0.88 -1.4 80,529 + HMPREF1058_RS01630 0.88 -1.0 80,530 - HMPREF1058_RS01630 0.89 -1.1 80,552 - -0.1 80,594 + -1.9 80,601 - +0.4 80,636 + -0.0 80,637 - +0.1 80,639 + -0.9 80,640 - -0.0 80,687 - -1.6
Or see this region's nucleotide sequence