Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00525 and HMPREF1058_RS00520 are separated by 46 nucleotides HMPREF1058_RS00520 and HMPREF1058_RS00515 are separated by 95 nucleotides HMPREF1058_RS00515 and HMPREF1058_RS00510 are separated by 46 nucleotides HMPREF1058_RS00510 and HMPREF1058_RS00505 are separated by 4 nucleotides HMPREF1058_RS00505 and HMPREF1058_RS00500 overlap by 19 nucleotides
HMPREF1058_RS00525: HMPREF1058_RS00525 - DUF4290 domain-containing protein, at 60,419 to 61,045
_RS00525
HMPREF1058_RS00520: HMPREF1058_RS00520 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 61,092 to 61,781
_RS00520
HMPREF1058_RS00515: HMPREF1058_RS00515 - YicC family protein, at 61,877 to 62,752
_RS00515
HMPREF1058_RS00510: HMPREF1058_RS00510 - guanylate kinase, at 62,799 to 63,368
_RS00510
HMPREF1058_RS00505: HMPREF1058_RS00505 - hypothetical protein, at 63,373 to 63,555
_RS00505
HMPREF1058_RS00500: HMPREF1058_RS00500 - nicotinate-nucleotide adenylyltransferase, at 63,537 to 64,109
_RS00500
Position (kb) 61
62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 60.902 kb on - strand, within HMPREF1058_RS00525 at 60.902 kb on - strand, within HMPREF1058_RS00525 at 60.911 kb on - strand, within HMPREF1058_RS00525 at 61.003 kb on - strand at 61.039 kb on - strand at 61.048 kb on - strand at 61.048 kb on - strand at 61.068 kb on - strand at 61.801 kb on - strand at 61.869 kb on + strand at 61.872 kb on + strand at 61.981 kb on + strand, within HMPREF1058_RS00515 at 61.998 kb on + strand, within HMPREF1058_RS00515 at 62.029 kb on + strand, within HMPREF1058_RS00515 at 62.127 kb on + strand, within HMPREF1058_RS00515 at 62.138 kb on + strand, within HMPREF1058_RS00515 at 62.175 kb on + strand, within HMPREF1058_RS00515 at 62.510 kb on + strand, within HMPREF1058_RS00515 at 62.567 kb on + strand, within HMPREF1058_RS00515 at 62.567 kb on + strand, within HMPREF1058_RS00515 at 62.622 kb on + strand, within HMPREF1058_RS00515 at 62.781 kb on + strand at 62.781 kb on + strand at 63.435 kb on + strand, within HMPREF1058_RS00505 at 63.478 kb on + strand, within HMPREF1058_RS00505 at 63.478 kb on + strand, within HMPREF1058_RS00505 at 63.501 kb on + strand, within HMPREF1058_RS00505
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 60,902 - HMPREF1058_RS00525 0.77 -2.6 60,902 - HMPREF1058_RS00525 0.77 -0.8 60,911 - HMPREF1058_RS00525 0.78 -1.7 61,003 - -2.2 61,039 - -1.7 61,048 - +2.0 61,048 - -1.1 61,068 - -1.1 61,801 - -0.7 61,869 + -2.2 61,872 + -2.4 61,981 + HMPREF1058_RS00515 0.12 -0.1 61,998 + HMPREF1058_RS00515 0.14 -1.0 62,029 + HMPREF1058_RS00515 0.17 -1.8 62,127 + HMPREF1058_RS00515 0.29 -2.4 62,138 + HMPREF1058_RS00515 0.30 -2.5 62,175 + HMPREF1058_RS00515 0.34 -2.6 62,510 + HMPREF1058_RS00515 0.72 +0.7 62,567 + HMPREF1058_RS00515 0.79 -2.2 62,567 + HMPREF1058_RS00515 0.79 -1.2 62,622 + HMPREF1058_RS00515 0.85 -3.3 62,781 + -0.1 62,781 + -0.6 63,435 + HMPREF1058_RS00505 0.34 -0.5 63,478 + HMPREF1058_RS00505 0.57 -1.4 63,478 + HMPREF1058_RS00505 0.57 -0.7 63,501 + HMPREF1058_RS00505 0.70 -0.0
Or see this region's nucleotide sequence