Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06545 and HMPREF1058_RS06540 are separated by 108 nucleotides HMPREF1058_RS06540 and HMPREF1058_RS06535 are separated by 55 nucleotides HMPREF1058_RS06535 and HMPREF1058_RS06530 are separated by 85 nucleotides
HMPREF1058_RS06545: HMPREF1058_RS06545 - transcriptional regulator, at 452,741 to 453,838
_RS06545
HMPREF1058_RS06540: HMPREF1058_RS06540 - hypothetical protein, at 453,947 to 454,168
_RS06540
HMPREF1058_RS06535: HMPREF1058_RS06535 - hypothetical protein, at 454,224 to 454,433
_RS06535
HMPREF1058_RS06530: HMPREF1058_RS06530 - flippase, at 454,519 to 455,991
_RS06530
Position (kb) 454
455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 453.399 kb on + strand, within HMPREF1058_RS06545 at 453.399 kb on + strand, within HMPREF1058_RS06545 at 453.399 kb on + strand, within HMPREF1058_RS06545 at 453.399 kb on + strand, within HMPREF1058_RS06545 at 453.399 kb on + strand, within HMPREF1058_RS06545 at 453.399 kb on + strand, within HMPREF1058_RS06545 at 453.400 kb on - strand, within HMPREF1058_RS06545 at 453.400 kb on - strand at 453.400 kb on - strand, within HMPREF1058_RS06545 at 453.400 kb on - strand, within HMPREF1058_RS06545 at 453.400 kb on - strand, within HMPREF1058_RS06545 at 453.400 kb on - strand, within HMPREF1058_RS06545 at 453.401 kb on + strand, within HMPREF1058_RS06545 at 453.424 kb on + strand, within HMPREF1058_RS06545 at 453.424 kb on + strand, within HMPREF1058_RS06545 at 453.567 kb on - strand, within HMPREF1058_RS06545 at 453.587 kb on + strand, within HMPREF1058_RS06545 at 453.587 kb on + strand, within HMPREF1058_RS06545 at 453.589 kb on + strand, within HMPREF1058_RS06545 at 453.589 kb on + strand, within HMPREF1058_RS06545 at 453.590 kb on - strand, within HMPREF1058_RS06545 at 453.590 kb on - strand, within HMPREF1058_RS06545 at 453.592 kb on + strand, within HMPREF1058_RS06545 at 453.592 kb on + strand, within HMPREF1058_RS06545 at 453.593 kb on - strand, within HMPREF1058_RS06545 at 453.643 kb on + strand, within HMPREF1058_RS06545 at 453.722 kb on + strand, within HMPREF1058_RS06545 at 453.722 kb on + strand, within HMPREF1058_RS06545 at 453.722 kb on + strand, within HMPREF1058_RS06545 at 453.723 kb on - strand, within HMPREF1058_RS06545 at 453.816 kb on - strand at 453.850 kb on - strand at 453.939 kb on + strand at 454.052 kb on + strand, within HMPREF1058_RS06540 at 454.053 kb on - strand, within HMPREF1058_RS06540 at 454.053 kb on - strand, within HMPREF1058_RS06540 at 454.085 kb on - strand, within HMPREF1058_RS06540 at 454.157 kb on + strand at 454.158 kb on - strand at 454.159 kb on + strand at 454.171 kb on + strand at 454.171 kb on + strand at 454.171 kb on + strand at 454.172 kb on - strand at 454.200 kb on + strand at 454.257 kb on - strand, within HMPREF1058_RS06535 at 454.262 kb on - strand, within HMPREF1058_RS06535 at 454.262 kb on - strand, within HMPREF1058_RS06535 at 454.292 kb on - strand, within HMPREF1058_RS06535 at 454.294 kb on + strand, within HMPREF1058_RS06535 at 454.294 kb on + strand, within HMPREF1058_RS06535 at 454.295 kb on - strand, within HMPREF1058_RS06535 at 454.316 kb on + strand, within HMPREF1058_RS06535 at 454.393 kb on + strand, within HMPREF1058_RS06535 at 454.393 kb on + strand, within HMPREF1058_RS06535 at 454.393 kb on + strand, within HMPREF1058_RS06535 at 454.394 kb on - strand at 454.394 kb on - strand, within HMPREF1058_RS06535 at 454.423 kb on + strand at 454.501 kb on - strand at 454.507 kb on + strand at 454.507 kb on + strand at 454.509 kb on + strand at 454.510 kb on - strand at 454.511 kb on + strand at 454.511 kb on + strand at 454.512 kb on - strand at 454.533 kb on - strand at 454.544 kb on - strand at 454.706 kb on - strand, within HMPREF1058_RS06530 at 454.706 kb on - strand, within HMPREF1058_RS06530 at 454.706 kb on - strand, within HMPREF1058_RS06530 at 454.706 kb on - strand, within HMPREF1058_RS06530 at 454.706 kb on - strand, within HMPREF1058_RS06530 at 454.706 kb on - strand, within HMPREF1058_RS06530 at 454.712 kb on + strand, within HMPREF1058_RS06530 at 454.782 kb on - strand, within HMPREF1058_RS06530 at 454.795 kb on - strand, within HMPREF1058_RS06530 at 454.810 kb on - strand, within HMPREF1058_RS06530 at 454.842 kb on + strand, within HMPREF1058_RS06530 at 454.843 kb on - strand, within HMPREF1058_RS06530 at 454.860 kb on - strand, within HMPREF1058_RS06530 at 454.971 kb on - strand, within HMPREF1058_RS06530 at 454.987 kb on - strand, within HMPREF1058_RS06530 at 455.027 kb on + strand, within HMPREF1058_RS06530 at 455.033 kb on - strand, within HMPREF1058_RS06530 at 455.113 kb on - strand, within HMPREF1058_RS06530 at 455.163 kb on - strand, within HMPREF1058_RS06530 at 455.167 kb on - strand, within HMPREF1058_RS06530 at 455.167 kb on - strand, within HMPREF1058_RS06530 at 455.197 kb on + strand, within HMPREF1058_RS06530 at 455.198 kb on - strand, within HMPREF1058_RS06530 at 455.216 kb on + strand, within HMPREF1058_RS06530 at 455.290 kb on - strand, within HMPREF1058_RS06530 at 455.318 kb on + strand, within HMPREF1058_RS06530 at 455.319 kb on - strand, within HMPREF1058_RS06530 at 455.400 kb on + strand, within HMPREF1058_RS06530 at 455.406 kb on - strand, within HMPREF1058_RS06530
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 453,399 + HMPREF1058_RS06545 0.60 +3.1 453,399 + HMPREF1058_RS06545 0.60 +1.2 453,399 + HMPREF1058_RS06545 0.60 +1.4 453,399 + HMPREF1058_RS06545 0.60 +5.0 453,399 + HMPREF1058_RS06545 0.60 +2.8 453,399 + HMPREF1058_RS06545 0.60 +2.3 453,400 - HMPREF1058_RS06545 0.60 +1.3 453,400 - +2.4 453,400 - HMPREF1058_RS06545 0.60 +3.9 453,400 - HMPREF1058_RS06545 0.60 +2.2 453,400 - HMPREF1058_RS06545 0.60 +1.3 453,400 - HMPREF1058_RS06545 0.60 +2.7 453,401 + HMPREF1058_RS06545 0.60 -0.3 453,424 + HMPREF1058_RS06545 0.62 +0.9 453,424 + HMPREF1058_RS06545 0.62 -1.8 453,567 - HMPREF1058_RS06545 0.75 +6.1 453,587 + HMPREF1058_RS06545 0.77 -1.7 453,587 + HMPREF1058_RS06545 0.77 +2.0 453,589 + HMPREF1058_RS06545 0.77 +3.8 453,589 + HMPREF1058_RS06545 0.77 +2.9 453,590 - HMPREF1058_RS06545 0.77 +4.1 453,590 - HMPREF1058_RS06545 0.77 +2.2 453,592 + HMPREF1058_RS06545 0.78 +4.0 453,592 + HMPREF1058_RS06545 0.78 +3.5 453,593 - HMPREF1058_RS06545 0.78 +3.0 453,643 + HMPREF1058_RS06545 0.82 +2.7 453,722 + HMPREF1058_RS06545 0.89 +3.2 453,722 + HMPREF1058_RS06545 0.89 +2.9 453,722 + HMPREF1058_RS06545 0.89 +0.1 453,723 - HMPREF1058_RS06545 0.89 +0.6 453,816 - +2.7 453,850 - -0.2 453,939 + +0.4 454,052 + HMPREF1058_RS06540 0.47 -0.0 454,053 - HMPREF1058_RS06540 0.48 +3.1 454,053 - HMPREF1058_RS06540 0.48 +0.5 454,085 - HMPREF1058_RS06540 0.62 +3.0 454,157 + -0.3 454,158 - +3.0 454,159 + +1.2 454,171 + -0.2 454,171 + -0.2 454,171 + +1.3 454,172 - +1.5 454,200 + -1.3 454,257 - HMPREF1058_RS06535 0.16 +4.1 454,262 - HMPREF1058_RS06535 0.18 +2.5 454,262 - HMPREF1058_RS06535 0.18 +0.9 454,292 - HMPREF1058_RS06535 0.32 +3.3 454,294 + HMPREF1058_RS06535 0.33 -3.0 454,294 + HMPREF1058_RS06535 0.33 -0.6 454,295 - HMPREF1058_RS06535 0.34 +0.9 454,316 + HMPREF1058_RS06535 0.44 -0.6 454,393 + HMPREF1058_RS06535 0.80 +0.2 454,393 + HMPREF1058_RS06535 0.80 -1.5 454,393 + HMPREF1058_RS06535 0.80 +0.3 454,394 - -0.1 454,394 - HMPREF1058_RS06535 0.81 +1.7 454,423 + -1.2 454,501 - +2.7 454,507 + +0.7 454,507 + +0.7 454,509 + -0.4 454,510 - -1.6 454,511 + +0.5 454,511 + +0.2 454,512 - +2.6 454,533 - +3.2 454,544 - -1.6 454,706 - HMPREF1058_RS06530 0.13 +3.6 454,706 - HMPREF1058_RS06530 0.13 +3.7 454,706 - HMPREF1058_RS06530 0.13 +5.3 454,706 - HMPREF1058_RS06530 0.13 +1.7 454,706 - HMPREF1058_RS06530 0.13 -0.7 454,706 - HMPREF1058_RS06530 0.13 +4.0 454,712 + HMPREF1058_RS06530 0.13 -0.6 454,782 - HMPREF1058_RS06530 0.18 +4.0 454,795 - HMPREF1058_RS06530 0.19 -1.3 454,810 - HMPREF1058_RS06530 0.20 +4.7 454,842 + HMPREF1058_RS06530 0.22 -2.2 454,843 - HMPREF1058_RS06530 0.22 +2.7 454,860 - HMPREF1058_RS06530 0.23 +4.2 454,971 - HMPREF1058_RS06530 0.31 +1.5 454,987 - HMPREF1058_RS06530 0.32 +5.2 455,027 + HMPREF1058_RS06530 0.34 -0.4 455,033 - HMPREF1058_RS06530 0.35 +4.4 455,113 - HMPREF1058_RS06530 0.40 -0.3 455,163 - HMPREF1058_RS06530 0.44 +4.3 455,167 - HMPREF1058_RS06530 0.44 +1.7 455,167 - HMPREF1058_RS06530 0.44 +0.9 455,197 + HMPREF1058_RS06530 0.46 +1.5 455,198 - HMPREF1058_RS06530 0.46 +0.2 455,216 + HMPREF1058_RS06530 0.47 +2.3 455,290 - HMPREF1058_RS06530 0.52 +3.5 455,318 + HMPREF1058_RS06530 0.54 +0.4 455,319 - HMPREF1058_RS06530 0.54 +1.6 455,400 + HMPREF1058_RS06530 0.60 +0.4 455,406 - HMPREF1058_RS06530 0.60 +0.7
Or see this region's nucleotide sequence