Experiment: Tara gum 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15675 and HMPREF1058_RS15670 are separated by 94 nucleotides HMPREF1058_RS15670 and HMPREF1058_RS15665 are separated by 46 nucleotides
HMPREF1058_RS15675: HMPREF1058_RS15675 - bifunctional folylpolyglutamate synthase/dihydrofolate synthase, at 859,284 to 860,570
_RS15675
HMPREF1058_RS15670: HMPREF1058_RS15670 - galactose mutarotase, at 860,665 to 861,759
_RS15670
HMPREF1058_RS15665: HMPREF1058_RS15665 - MFS transporter, at 861,806 to 863,146
_RS15665
Position (kb) 860
861
862 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 860.620 kb on + strand at 860.636 kb on - strand at 860.638 kb on - strand at 860.661 kb on + strand at 860.800 kb on + strand, within HMPREF1058_RS15670 at 860.816 kb on + strand, within HMPREF1058_RS15670 at 860.817 kb on - strand, within HMPREF1058_RS15670 at 860.817 kb on - strand at 860.821 kb on - strand, within HMPREF1058_RS15670 at 860.848 kb on + strand, within HMPREF1058_RS15670 at 860.849 kb on - strand, within HMPREF1058_RS15670 at 860.849 kb on - strand, within HMPREF1058_RS15670 at 860.874 kb on + strand, within HMPREF1058_RS15670 at 860.877 kb on + strand, within HMPREF1058_RS15670 at 860.878 kb on - strand, within HMPREF1058_RS15670 at 860.879 kb on + strand, within HMPREF1058_RS15670 at 860.879 kb on + strand, within HMPREF1058_RS15670 at 860.890 kb on - strand at 860.980 kb on + strand, within HMPREF1058_RS15670 at 860.980 kb on + strand, within HMPREF1058_RS15670 at 860.980 kb on + strand at 860.991 kb on + strand, within HMPREF1058_RS15670 at 861.155 kb on + strand, within HMPREF1058_RS15670 at 861.159 kb on + strand, within HMPREF1058_RS15670 at 861.215 kb on + strand, within HMPREF1058_RS15670 at 861.216 kb on - strand, within HMPREF1058_RS15670 at 861.310 kb on + strand, within HMPREF1058_RS15670 at 861.329 kb on + strand, within HMPREF1058_RS15670 at 861.329 kb on + strand, within HMPREF1058_RS15670 at 861.359 kb on + strand, within HMPREF1058_RS15670 at 861.460 kb on + strand, within HMPREF1058_RS15670 at 861.460 kb on + strand, within HMPREF1058_RS15670 at 861.460 kb on + strand, within HMPREF1058_RS15670 at 861.465 kb on - strand, within HMPREF1058_RS15670 at 861.544 kb on + strand, within HMPREF1058_RS15670 at 861.549 kb on + strand, within HMPREF1058_RS15670 at 861.571 kb on + strand, within HMPREF1058_RS15670 at 861.573 kb on + strand, within HMPREF1058_RS15670 at 861.573 kb on + strand, within HMPREF1058_RS15670 at 861.574 kb on - strand, within HMPREF1058_RS15670 at 861.718 kb on + strand at 861.771 kb on - strand at 861.776 kb on - strand at 861.783 kb on - strand at 861.830 kb on - strand at 862.009 kb on + strand, within HMPREF1058_RS15665 at 862.059 kb on + strand, within HMPREF1058_RS15665 at 862.088 kb on - strand at 862.111 kb on + strand, within HMPREF1058_RS15665 at 862.111 kb on + strand, within HMPREF1058_RS15665 at 862.112 kb on - strand, within HMPREF1058_RS15665 at 862.113 kb on + strand, within HMPREF1058_RS15665 at 862.114 kb on - strand, within HMPREF1058_RS15665 at 862.119 kb on + strand, within HMPREF1058_RS15665 at 862.136 kb on + strand, within HMPREF1058_RS15665 at 862.137 kb on - strand, within HMPREF1058_RS15665 at 862.156 kb on + strand, within HMPREF1058_RS15665 at 862.163 kb on + strand, within HMPREF1058_RS15665 at 862.197 kb on + strand, within HMPREF1058_RS15665 at 862.201 kb on + strand, within HMPREF1058_RS15665 at 862.374 kb on + strand, within HMPREF1058_RS15665 at 862.375 kb on - strand, within HMPREF1058_RS15665 at 862.516 kb on + strand at 862.524 kb on + strand, within HMPREF1058_RS15665 at 862.524 kb on + strand, within HMPREF1058_RS15665 at 862.530 kb on + strand, within HMPREF1058_RS15665 at 862.548 kb on - strand, within HMPREF1058_RS15665 at 862.551 kb on + strand, within HMPREF1058_RS15665 at 862.552 kb on - strand, within HMPREF1058_RS15665 at 862.589 kb on + strand, within HMPREF1058_RS15665 at 862.655 kb on - strand, within HMPREF1058_RS15665 at 862.667 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/ml (C) remove 860,620 + -1.1 860,636 - +0.8 860,638 - -1.9 860,661 + +0.1 860,800 + HMPREF1058_RS15670 0.12 +1.3 860,816 + HMPREF1058_RS15670 0.14 -0.1 860,817 - HMPREF1058_RS15670 0.14 -1.0 860,817 - +0.8 860,821 - HMPREF1058_RS15670 0.14 -1.6 860,848 + HMPREF1058_RS15670 0.17 -1.2 860,849 - HMPREF1058_RS15670 0.17 -0.2 860,849 - HMPREF1058_RS15670 0.17 -1.5 860,874 + HMPREF1058_RS15670 0.19 -0.4 860,877 + HMPREF1058_RS15670 0.19 -1.9 860,878 - HMPREF1058_RS15670 0.19 -0.7 860,879 + HMPREF1058_RS15670 0.20 +0.3 860,879 + HMPREF1058_RS15670 0.20 +1.8 860,890 - +0.2 860,980 + HMPREF1058_RS15670 0.29 +0.5 860,980 + HMPREF1058_RS15670 0.29 +0.1 860,980 + +0.9 860,991 + HMPREF1058_RS15670 0.30 +0.4 861,155 + HMPREF1058_RS15670 0.45 -1.6 861,159 + HMPREF1058_RS15670 0.45 -0.2 861,215 + HMPREF1058_RS15670 0.50 +0.4 861,216 - HMPREF1058_RS15670 0.50 -0.1 861,310 + HMPREF1058_RS15670 0.59 -0.5 861,329 + HMPREF1058_RS15670 0.61 +1.8 861,329 + HMPREF1058_RS15670 0.61 -0.6 861,359 + HMPREF1058_RS15670 0.63 -0.7 861,460 + HMPREF1058_RS15670 0.73 +1.1 861,460 + HMPREF1058_RS15670 0.73 -0.1 861,460 + HMPREF1058_RS15670 0.73 +1.0 861,465 - HMPREF1058_RS15670 0.73 +0.2 861,544 + HMPREF1058_RS15670 0.80 -0.6 861,549 + HMPREF1058_RS15670 0.81 +2.1 861,571 + HMPREF1058_RS15670 0.83 +0.7 861,573 + HMPREF1058_RS15670 0.83 -1.9 861,573 + HMPREF1058_RS15670 0.83 -0.8 861,574 - HMPREF1058_RS15670 0.83 -0.8 861,718 + -1.6 861,771 - -1.2 861,776 - +1.3 861,783 - +1.1 861,830 - +1.5 862,009 + HMPREF1058_RS15665 0.15 +0.8 862,059 + HMPREF1058_RS15665 0.19 +1.6 862,088 - -0.4 862,111 + HMPREF1058_RS15665 0.23 +3.2 862,111 + HMPREF1058_RS15665 0.23 -1.9 862,112 - HMPREF1058_RS15665 0.23 -0.9 862,113 + HMPREF1058_RS15665 0.23 +0.9 862,114 - HMPREF1058_RS15665 0.23 -0.6 862,119 + HMPREF1058_RS15665 0.23 +0.2 862,136 + HMPREF1058_RS15665 0.25 +1.8 862,137 - HMPREF1058_RS15665 0.25 -0.6 862,156 + HMPREF1058_RS15665 0.26 -0.8 862,163 + HMPREF1058_RS15665 0.27 +1.1 862,197 + HMPREF1058_RS15665 0.29 -0.1 862,201 + HMPREF1058_RS15665 0.29 +0.7 862,374 + HMPREF1058_RS15665 0.42 +2.1 862,375 - HMPREF1058_RS15665 0.42 +0.5 862,516 + -0.6 862,524 + HMPREF1058_RS15665 0.54 +2.0 862,524 + HMPREF1058_RS15665 0.54 +0.8 862,530 + HMPREF1058_RS15665 0.54 +0.8 862,548 - HMPREF1058_RS15665 0.55 -0.1 862,551 + HMPREF1058_RS15665 0.56 -0.9 862,552 - HMPREF1058_RS15665 0.56 +1.2 862,589 + HMPREF1058_RS15665 0.58 +1.5 862,655 - HMPREF1058_RS15665 0.63 +0.6 862,667 + -0.7
Or see this region's nucleotide sequence