Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08390

Experiment: Tara gum 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tara gum 2.5 mg/ml (C)
1,167,457	+		HMPREF1058_RS08395	0.62	-1.9
1,167,474	+		HMPREF1058_RS08395	0.63	-1.7
1,167,693	+		HMPREF1058_RS08395	0.72	-1.2
1,167,750	+		HMPREF1058_RS08395	0.74	-1.8
1,167,751	-		HMPREF1058_RS08395	0.74	+0.4
1,167,753	+		HMPREF1058_RS08395	0.74	-1.3
1,167,753	+		HMPREF1058_RS08395	0.74	-1.7
1,167,753	+		HMPREF1058_RS08395	0.74	-0.1
1,167,754	-		HMPREF1058_RS08395	0.74	+1.6
1,167,773	+		HMPREF1058_RS08395	0.75	-0.5
1,167,872	-		HMPREF1058_RS08395	0.79	-4.2
1,167,897	+		HMPREF1058_RS08395	0.80	-3.7
1,168,030	+		HMPREF1058_RS08395	0.85	+0.1
1,168,030	+		HMPREF1058_RS08395	0.85	+0.6
1,168,031	-		HMPREF1058_RS08395	0.85	+0.7
1,168,054	-		HMPREF1058_RS08395	0.86	-1.3
1,168,078	-		HMPREF1058_RS08395	0.87	-1.4
1,168,133	-		HMPREF1058_RS08395	0.89	-1.5
1,168,169	+				-2.3
1,168,169	+				-2.8
1,168,170	-				-0.0
1,168,170	-				-1.0
1,168,324	+				-1.5
1,168,401	+				-0.4
1,168,406	-				-2.4
1,168,577	-				-0.7
1,168,620	+				-0.9
1,168,673	-		HMPREF1058_RS08390	0.11	-0.2
1,168,689	+		HMPREF1058_RS08390	0.12	-0.3
1,168,732	-		HMPREF1058_RS08390	0.14	-1.3
1,168,732	-		HMPREF1058_RS08390	0.14	-1.8
1,168,732	-		HMPREF1058_RS08390	0.14	+1.3
1,168,732	-		HMPREF1058_RS08390	0.14	-0.8
1,168,735	+		HMPREF1058_RS08390	0.14	-0.3
1,168,736	-		HMPREF1058_RS08390	0.14	-1.7
1,168,736	-		HMPREF1058_RS08390	0.14	-0.9
1,168,760	-		HMPREF1058_RS08390	0.15	-0.1
1,168,760	-		HMPREF1058_RS08390	0.15	-0.5
1,168,763	+		HMPREF1058_RS08390	0.15	-0.2
1,168,764	-		HMPREF1058_RS08390	0.15	-0.3
1,168,847	-		HMPREF1058_RS08390	0.18	-0.4
1,168,870	-		HMPREF1058_RS08390	0.19	-0.4
1,168,978	+		HMPREF1058_RS08390	0.24	+0.3
1,168,978	+		HMPREF1058_RS08390	0.24	-0.3
1,168,979	-		HMPREF1058_RS08390	0.24	-0.3
1,169,019	+		HMPREF1058_RS08390	0.26	-0.6
1,169,056	-		HMPREF1058_RS08390	0.27	-1.8
1,169,199	-		HMPREF1058_RS08390	0.33	-0.8
1,169,277	+		HMPREF1058_RS08390	0.37	+0.2
1,169,371	+		HMPREF1058_RS08390	0.41	-0.6
1,169,371	+		HMPREF1058_RS08390	0.41	-0.7
1,169,371	+		HMPREF1058_RS08390	0.41	-1.6
1,169,372	-		HMPREF1058_RS08390	0.41	+0.2
1,169,372	-		HMPREF1058_RS08390	0.41	+1.0
1,169,372	-		HMPREF1058_RS08390	0.41	-0.5
1,169,377	+		HMPREF1058_RS08390	0.41	-0.7
1,169,420	-		HMPREF1058_RS08390	0.43	-0.8
1,169,429	+		HMPREF1058_RS08390	0.43	+1.1
1,169,518	-		HMPREF1058_RS08390	0.47	+1.1
1,169,531	+		HMPREF1058_RS08390	0.48	-2.9
1,169,531	+		HMPREF1058_RS08390	0.48	+0.2
1,169,617	-		HMPREF1058_RS08390	0.51	-1.8
1,169,757	+		HMPREF1058_RS08390	0.57	-0.2
1,169,757	+		HMPREF1058_RS08390	0.57	+0.1
1,169,918	-		HMPREF1058_RS08390	0.64	-0.9
1,169,968	-		HMPREF1058_RS08390	0.66	+1.3
1,170,034	-		HMPREF1058_RS08390	0.69	-0.8
1,170,297	+		HMPREF1058_RS08390	0.80	-0.0
1,170,349	-		HMPREF1058_RS08390	0.82	+0.3
1,170,393	+		HMPREF1058_RS08390	0.84	-0.5
1,170,442	-		HMPREF1058_RS08390	0.86	-1.4
1,170,615	+				-1.4
1,170,658	+				+0.9
1,170,660	+				-1.0
1,170,660	+				-1.0
1,170,660	+				-2.0
1,170,661	-				-1.1
1,170,725	-				-1.5
1,170,734	-				-0.7
1,170,737	+				-2.0
1,170,821	-				-0.1
1,170,949	+				+0.5
1,170,949	+				-1.3
1,170,950	-				-1.3
1,170,977	+				-0.3
1,170,979	+				-0.1
1,170,994	-				+2.6
1,170,997	-				-0.4
1,171,111	+				-1.1
1,171,111	+				-2.2
1,171,112	-				+0.0
1,171,138	-				-0.6
1,171,246	+		HMPREF1058_RS08385	0.10	-0.3
1,171,246	+		HMPREF1058_RS08385	0.10	-0.4
1,171,246	+		HMPREF1058_RS08385	0.10	-1.8
1,171,246	+		HMPREF1058_RS08385	0.10	-1.1
1,171,248	+		HMPREF1058_RS08385	0.10	-1.2
1,171,274	+		HMPREF1058_RS08385	0.11	+0.3
1,171,274	+		HMPREF1058_RS08385	0.11	-1.5
1,171,276	+		HMPREF1058_RS08385	0.11	-3.1
1,171,277	-		HMPREF1058_RS08385	0.12	-0.0
1,171,302	+		HMPREF1058_RS08385	0.12	-0.7
1,171,302	+		HMPREF1058_RS08385	0.12	-0.4
1,171,302	+		HMPREF1058_RS08385	0.12	+1.6
1,171,303	-		HMPREF1058_RS08385	0.12	+0.5
1,171,309	+		HMPREF1058_RS08385	0.13	-1.9
1,171,346	+		HMPREF1058_RS08385	0.14	+0.1
1,171,346	+		HMPREF1058_RS08385	0.14	+2.1
1,171,347	-		HMPREF1058_RS08385	0.14	-1.0
1,171,372	+		HMPREF1058_RS08385	0.15	-1.1
1,171,393	+		HMPREF1058_RS08385	0.16	-0.1
1,171,393	+		HMPREF1058_RS08385	0.16	+0.7
1,171,393	+		HMPREF1058_RS08385	0.16	-0.8
1,171,628	+		HMPREF1058_RS08385	0.24	-1.3
1,171,702	-		HMPREF1058_RS08385	0.26	-1.2
1,171,702	-		HMPREF1058_RS08385	0.26	-0.3