Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05910

Experiment: Tara gum 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tara gum 2.5 mg/ml (C)
49,363	-		HMPREF1058_RS05920	0.71	-2.0
49,363	-		HMPREF1058_RS05920	0.71	-1.1
49,415	-		HMPREF1058_RS05920	0.81	+0.6
49,415	-		HMPREF1058_RS05920	0.81	+0.3
49,443	+				-0.0
49,530	-				-1.0
49,530	-				-2.0
49,542	-				-0.3
49,542	-				-1.3
49,665	-		HMPREF1058_RS05915	0.32	-2.3
49,692	+		HMPREF1058_RS05915	0.38	+0.8
49,696	-		HMPREF1058_RS05915	0.38	-2.0
49,715	+		HMPREF1058_RS05915	0.42	-1.3
49,715	+		HMPREF1058_RS05915	0.42	-2.1
50,040	+				-0.0
50,041	-				-1.0
50,046	+				-0.6
50,104	+				-1.5
50,124	+				-0.5
50,125	-				-0.5
50,125	-				-1.0
50,126	+				+2.0
50,126	+				-1.8
50,126	+				+1.1
50,127	-				-1.8
50,127	-				+0.1
50,127	-				+0.8
50,129	-				-0.7
50,183	+				-1.0
50,183	+				-3.2
50,192	+				+0.7
50,192	+				-1.0
50,229	-				+0.4
50,229	-				-1.8
50,229	-				+2.6
50,307	+		HMPREF1058_RS05910	0.12	-1.3
50,308	-		HMPREF1058_RS05910	0.12	-2.0
50,318	+		HMPREF1058_RS05910	0.13	-0.8
50,318	+		HMPREF1058_RS05910	0.13	-3.0
50,413	+		HMPREF1058_RS05910	0.21	-2.5
50,413	+		HMPREF1058_RS05910	0.21	-0.2
50,414	-		HMPREF1058_RS05910	0.21	-0.0
50,414	-		HMPREF1058_RS05910	0.21	-2.9
50,436	-		HMPREF1058_RS05910	0.23	+1.5
50,436	-		HMPREF1058_RS05910	0.23	-1.0
50,436	-		HMPREF1058_RS05910	0.23	-0.4
50,466	-				+0.1
50,466	-		HMPREF1058_RS05910	0.26	-2.5
50,474	-		HMPREF1058_RS05910	0.27	-1.5
50,513	+		HMPREF1058_RS05910	0.30	-0.3
50,514	-		HMPREF1058_RS05910	0.30	-0.4
50,514	-		HMPREF1058_RS05910	0.30	-0.8
50,595	-		HMPREF1058_RS05910	0.37	-0.7
50,720	+		HMPREF1058_RS05910	0.48	-2.6
50,721	-		HMPREF1058_RS05910	0.48	-0.0
50,732	-		HMPREF1058_RS05910	0.49	-0.7
50,770	+		HMPREF1058_RS05910	0.53	-1.0
50,771	-		HMPREF1058_RS05910	0.53	-1.6
50,771	-		HMPREF1058_RS05910	0.53	-0.6
50,843	+		HMPREF1058_RS05910	0.59	-1.4
50,844	-		HMPREF1058_RS05910	0.59	+0.6
50,844	-		HMPREF1058_RS05910	0.59	-1.4
50,850	-		HMPREF1058_RS05910	0.60	+0.3
50,907	+		HMPREF1058_RS05910	0.65	-1.6
50,907	+		HMPREF1058_RS05910	0.65	-1.0
50,908	-		HMPREF1058_RS05910	0.65	-2.4
50,909	+		HMPREF1058_RS05910	0.65	+0.7
50,910	-		HMPREF1058_RS05910	0.65	-1.9
50,942	+		HMPREF1058_RS05910	0.68	+0.6
50,942	+		HMPREF1058_RS05910	0.68	-3.0
50,950	-		HMPREF1058_RS05910	0.69	-0.0
50,989	-		HMPREF1058_RS05910	0.72	-0.3
50,989	-		HMPREF1058_RS05910	0.72	-1.1
51,032	+		HMPREF1058_RS05910	0.76	-1.5
51,034	+		HMPREF1058_RS05910	0.76	-1.5
51,034	+		HMPREF1058_RS05910	0.76	-0.4
51,034	+		HMPREF1058_RS05910	0.76	-3.2
51,101	+		HMPREF1058_RS05910	0.82	+0.3
51,102	-		HMPREF1058_RS05910	0.82	-0.9
51,122	-		HMPREF1058_RS05910	0.84	-1.0
51,306	-				-0.0
51,326	+				+0.4
51,342	-				-1.5
51,486	+		HMPREF1058_RS0119820	0.17	-2.9
51,563	-		HMPREF1058_RS0119820	0.51	+3.0
51,601	+		HMPREF1058_RS0119820	0.67	+0.1
51,602	-		HMPREF1058_RS0119820	0.68	-2.2
51,675	+				+0.6
51,722	+				+1.0
51,827	+				-2.5
51,844	+				+3.2
51,845	-				+1.0
51,862	-				-1.6
51,862	-				-2.4
51,909	+				+0.2
51,909	+				-0.4
51,910	-				-1.2
51,957	-				-1.6
52,001	+		HMPREF1058_RS05905	0.11	-0.8
52,003	+		HMPREF1058_RS05905	0.12	-1.6
52,003	+		HMPREF1058_RS05905	0.12	-2.3
52,004	-		HMPREF1058_RS05905	0.12	+0.5
52,028	-		HMPREF1058_RS05905	0.16	-0.6
52,046	-		HMPREF1058_RS05905	0.19	-1.5
52,267	-		HMPREF1058_RS05905	0.60	-0.2