Experiment: Tara gum 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03445 and HMPREF1058_RS21110 are separated by 179 nucleotides HMPREF1058_RS21110 and HMPREF1058_RS03435 are separated by 286 nucleotides HMPREF1058_RS03435 and HMPREF1058_RS21670 are separated by 74 nucleotides HMPREF1058_RS21670 and HMPREF1058_RS03430 overlap by 4 nucleotides
HMPREF1058_RS03445: HMPREF1058_RS03445 - hypothetical protein, at 278,426 to 280,690
_RS03445
HMPREF1058_RS21110: HMPREF1058_RS21110 - DUF4248 domain-containing protein, at 280,870 to 281,076
_RS21110
HMPREF1058_RS03435: HMPREF1058_RS03435 - DNA-binding protein, at 281,363 to 281,869
_RS03435
HMPREF1058_RS21670: HMPREF1058_RS21670 - smalltalk protein, at 281,944 to 282,063
_RS21670
HMPREF1058_RS03430: HMPREF1058_RS03430 - N-acetylmuramoyl-L-alanine amidase, at 282,060 to 282,572
_RS03430
Position (kb) 281
282 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 280.449 kb on - strand, within HMPREF1058_RS03445 at 280.551 kb on + strand at 280.572 kb on - strand at 280.605 kb on + strand at 280.735 kb on + strand at 280.737 kb on + strand at 280.752 kb on + strand at 280.775 kb on - strand at 280.778 kb on - strand at 280.791 kb on - strand at 280.793 kb on - strand at 280.795 kb on - strand at 280.802 kb on - strand at 280.804 kb on - strand at 280.804 kb on - strand at 281.112 kb on + strand at 281.122 kb on + strand at 281.188 kb on + strand at 281.210 kb on + strand at 281.210 kb on + strand at 281.211 kb on - strand at 281.348 kb on - strand at 281.380 kb on + strand at 281.380 kb on + strand at 281.444 kb on + strand, within HMPREF1058_RS03435 at 281.504 kb on + strand, within HMPREF1058_RS03435 at 281.522 kb on + strand, within HMPREF1058_RS03435 at 281.523 kb on - strand, within HMPREF1058_RS03435 at 281.665 kb on - strand at 282.147 kb on + strand, within HMPREF1058_RS03430 at 282.147 kb on + strand, within HMPREF1058_RS03430 at 282.653 kb on - strand at 282.653 kb on - strand at 282.681 kb on + strand at 282.857 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/ml (C) remove 280,449 - HMPREF1058_RS03445 0.89 -0.6 280,551 + -0.7 280,572 - +1.6 280,605 + +0.7 280,735 + -1.0 280,737 + -0.4 280,752 + +1.0 280,775 - -1.3 280,778 - -3.0 280,791 - -0.3 280,793 - -1.2 280,795 - +0.2 280,802 - -0.6 280,804 - +0.9 280,804 - -0.2 281,112 + -0.7 281,122 + -2.1 281,188 + -1.1 281,210 + -1.1 281,210 + -1.4 281,211 - -1.5 281,348 - +2.0 281,380 + +1.7 281,380 + -0.3 281,444 + HMPREF1058_RS03435 0.16 -1.1 281,504 + HMPREF1058_RS03435 0.28 -2.6 281,522 + HMPREF1058_RS03435 0.31 -3.3 281,523 - HMPREF1058_RS03435 0.32 -1.2 281,665 - +0.2 282,147 + HMPREF1058_RS03430 0.17 -0.6 282,147 + HMPREF1058_RS03430 0.17 +0.6 282,653 - -0.9 282,653 - -1.9 282,681 + -2.0 282,857 - -0.6
Or see this region's nucleotide sequence