Experiment: AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03481 and MPMX20_03482 are separated by 63 nucleotides MPMX20_03482 and MPMX20_03483 are separated by 51 nucleotides MPMX20_03483 and MPMX20_03484 overlap by 8 nucleotides MPMX20_03484 and MPMX20_03485 are separated by 22 nucleotides
MPMX20_03481: MPMX20_03481 - Inner membrane protein YpjD, at 3,670,403 to 3,671,269
_03481
MPMX20_03482: MPMX20_03482 - hypothetical protein, at 3,671,333 to 3,672,574
_03482
MPMX20_03483: MPMX20_03483 - Protein GrpE, at 3,672,626 to 3,673,219
_03483
MPMX20_03484: MPMX20_03484 - hypothetical protein, at 3,673,212 to 3,673,319
_03484
MPMX20_03485: MPMX20_03485 - NAD kinase, at 3,673,342 to 3,674,220
_03485
Position (kb)
3671
3672
3673 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3670.361 kb on - strand at 3670.382 kb on + strand at 3670.384 kb on - strand at 3670.418 kb on - strand at 3670.425 kb on - strand at 3670.431 kb on + strand at 3670.431 kb on + strand at 3670.431 kb on + strand at 3670.439 kb on - strand at 3670.439 kb on - strand at 3670.439 kb on - strand at 3670.521 kb on + strand, within MPMX20_03481 at 3670.536 kb on + strand, within MPMX20_03481 at 3670.536 kb on + strand, within MPMX20_03481 at 3670.536 kb on + strand, within MPMX20_03481 at 3670.539 kb on - strand, within MPMX20_03481 at 3670.544 kb on - strand, within MPMX20_03481 at 3670.670 kb on - strand, within MPMX20_03481 at 3670.754 kb on - strand, within MPMX20_03481 at 3670.771 kb on - strand, within MPMX20_03481 at 3670.771 kb on - strand, within MPMX20_03481 at 3670.780 kb on + strand, within MPMX20_03481 at 3670.780 kb on + strand, within MPMX20_03481 at 3670.793 kb on - strand, within MPMX20_03481 at 3670.793 kb on - strand, within MPMX20_03481 at 3670.824 kb on - strand, within MPMX20_03481 at 3670.855 kb on - strand, within MPMX20_03481 at 3670.865 kb on + strand, within MPMX20_03481 at 3670.875 kb on - strand, within MPMX20_03481 at 3670.889 kb on - strand, within MPMX20_03481 at 3670.908 kb on + strand, within MPMX20_03481 at 3670.908 kb on + strand, within MPMX20_03481 at 3670.929 kb on - strand, within MPMX20_03481 at 3670.929 kb on - strand, within MPMX20_03481 at 3670.959 kb on + strand, within MPMX20_03481 at 3670.984 kb on + strand, within MPMX20_03481 at 3670.996 kb on + strand, within MPMX20_03481 at 3671.020 kb on + strand, within MPMX20_03481 at 3671.025 kb on + strand, within MPMX20_03481 at 3671.028 kb on - strand, within MPMX20_03481 at 3671.028 kb on - strand, within MPMX20_03481 at 3671.040 kb on + strand, within MPMX20_03481 at 3671.040 kb on + strand, within MPMX20_03481 at 3671.040 kb on + strand, within MPMX20_03481 at 3671.040 kb on + strand, within MPMX20_03481 at 3671.052 kb on + strand, within MPMX20_03481 at 3671.057 kb on + strand, within MPMX20_03481 at 3671.057 kb on + strand, within MPMX20_03481 at 3671.058 kb on - strand, within MPMX20_03481 at 3671.113 kb on + strand, within MPMX20_03481 at 3671.144 kb on - strand, within MPMX20_03481 at 3671.202 kb on - strand at 3671.286 kb on + strand at 3671.299 kb on + strand at 3671.304 kb on + strand at 3671.316 kb on + strand at 3671.324 kb on - strand at 3671.328 kb on + strand at 3671.336 kb on + strand at 3671.409 kb on + strand at 3671.417 kb on - strand at 3671.419 kb on + strand at 3671.427 kb on - strand at 3671.476 kb on - strand, within MPMX20_03482 at 3671.476 kb on - strand, within MPMX20_03482 at 3671.478 kb on + strand, within MPMX20_03482 at 3671.481 kb on - strand, within MPMX20_03482 at 3671.527 kb on + strand, within MPMX20_03482 at 3671.537 kb on + strand, within MPMX20_03482 at 3671.608 kb on - strand, within MPMX20_03482 at 3671.690 kb on - strand, within MPMX20_03482 at 3671.779 kb on - strand, within MPMX20_03482 at 3671.782 kb on - strand, within MPMX20_03482 at 3671.787 kb on - strand, within MPMX20_03482 at 3671.895 kb on + strand, within MPMX20_03482 at 3671.960 kb on + strand, within MPMX20_03482 at 3671.977 kb on + strand, within MPMX20_03482 at 3671.997 kb on + strand, within MPMX20_03482 at 3672.000 kb on - strand, within MPMX20_03482 at 3672.153 kb on + strand, within MPMX20_03482 at 3672.153 kb on + strand, within MPMX20_03482 at 3672.184 kb on + strand, within MPMX20_03482 at 3672.375 kb on - strand, within MPMX20_03482 at 3672.411 kb on + strand, within MPMX20_03482 at 3672.411 kb on + strand, within MPMX20_03482 at 3672.471 kb on + strand at 3672.526 kb on + strand at 3672.534 kb on - strand at 3672.561 kb on + strand at 3672.561 kb on + strand at 3672.566 kb on + strand at 3672.569 kb on - strand at 3672.569 kb on - strand at 3672.569 kb on - strand at 3672.571 kb on + strand at 3672.571 kb on + strand at 3672.579 kb on - strand at 3672.579 kb on - strand at 3672.579 kb on - strand at 3672.579 kb on - strand at 3672.579 kb on - strand at 3672.584 kb on - strand at 3673.308 kb on + strand, within MPMX20_03484 at 3673.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001 remove 3,670,361 - -1.6 3,670,382 + -0.3 3,670,384 - +0.6 3,670,418 - -1.7 3,670,425 - -2.0 3,670,431 + -2.2 3,670,431 + -1.4 3,670,431 + +1.3 3,670,439 - +0.7 3,670,439 - +0.9 3,670,439 - +1.0 3,670,521 + MPMX20_03481 0.14 -2.3 3,670,536 + MPMX20_03481 0.15 -3.0 3,670,536 + MPMX20_03481 0.15 +0.8 3,670,536 + MPMX20_03481 0.15 +0.9 3,670,539 - MPMX20_03481 0.16 +0.8 3,670,544 - MPMX20_03481 0.16 -1.5 3,670,670 - MPMX20_03481 0.31 +0.2 3,670,754 - MPMX20_03481 0.40 -0.9 3,670,771 - MPMX20_03481 0.42 +1.2 3,670,771 - MPMX20_03481 0.42 -0.3 3,670,780 + MPMX20_03481 0.43 +1.5 3,670,780 + MPMX20_03481 0.43 -3.1 3,670,793 - MPMX20_03481 0.45 -0.2 3,670,793 - MPMX20_03481 0.45 +0.1 3,670,824 - MPMX20_03481 0.49 -0.9 3,670,855 - MPMX20_03481 0.52 +0.8 3,670,865 + MPMX20_03481 0.53 -0.7 3,670,875 - MPMX20_03481 0.54 -0.3 3,670,889 - MPMX20_03481 0.56 +1.6 3,670,908 + MPMX20_03481 0.58 +1.7 3,670,908 + MPMX20_03481 0.58 +1.4 3,670,929 - MPMX20_03481 0.61 -0.8 3,670,929 - MPMX20_03481 0.61 -1.8 3,670,959 + MPMX20_03481 0.64 +1.8 3,670,984 + MPMX20_03481 0.67 -0.3 3,670,996 + MPMX20_03481 0.68 -1.8 3,671,020 + MPMX20_03481 0.71 +0.6 3,671,025 + MPMX20_03481 0.72 -3.0 3,671,028 - MPMX20_03481 0.72 -2.0 3,671,028 - MPMX20_03481 0.72 +2.7 3,671,040 + MPMX20_03481 0.73 -3.8 3,671,040 + MPMX20_03481 0.73 -1.4 3,671,040 + MPMX20_03481 0.73 -2.3 3,671,040 + MPMX20_03481 0.73 -0.7 3,671,052 + MPMX20_03481 0.75 -1.8 3,671,057 + MPMX20_03481 0.75 -2.2 3,671,057 + MPMX20_03481 0.75 -3.2 3,671,058 - MPMX20_03481 0.76 +1.9 3,671,113 + MPMX20_03481 0.82 -2.1 3,671,144 - MPMX20_03481 0.85 -3.3 3,671,202 - -0.4 3,671,286 + +1.0 3,671,299 + +1.0 3,671,304 + -0.5 3,671,316 + -3.0 3,671,324 - +1.1 3,671,328 + -0.0 3,671,336 + -0.8 3,671,409 + -1.6 3,671,417 - +2.3 3,671,419 + -1.0 3,671,427 - -0.1 3,671,476 - MPMX20_03482 0.12 +1.8 3,671,476 - MPMX20_03482 0.12 -2.8 3,671,478 + MPMX20_03482 0.12 -1.2 3,671,481 - MPMX20_03482 0.12 +0.2 3,671,527 + MPMX20_03482 0.16 +0.9 3,671,537 + MPMX20_03482 0.16 -0.5 3,671,608 - MPMX20_03482 0.22 +1.2 3,671,690 - MPMX20_03482 0.29 -2.6 3,671,779 - MPMX20_03482 0.36 -0.6 3,671,782 - MPMX20_03482 0.36 -1.1 3,671,787 - MPMX20_03482 0.37 -3.6 3,671,895 + MPMX20_03482 0.45 -0.4 3,671,960 + MPMX20_03482 0.50 -0.0 3,671,977 + MPMX20_03482 0.52 -0.6 3,671,997 + MPMX20_03482 0.53 -1.2 3,672,000 - MPMX20_03482 0.54 -0.1 3,672,153 + MPMX20_03482 0.66 +0.6 3,672,153 + MPMX20_03482 0.66 -3.3 3,672,184 + MPMX20_03482 0.69 -1.0 3,672,375 - MPMX20_03482 0.84 +2.4 3,672,411 + MPMX20_03482 0.87 +0.6 3,672,411 + MPMX20_03482 0.87 -0.8 3,672,471 + -3.5 3,672,526 + +0.9 3,672,534 - -3.7 3,672,561 + -2.8 3,672,561 + +1.8 3,672,566 + -2.0 3,672,569 - -0.9 3,672,569 - +1.5 3,672,569 - +0.6 3,672,571 + +0.1 3,672,571 + +1.1 3,672,579 - -1.6 3,672,579 - +1.0 3,672,579 - -0.2 3,672,579 - +0.9 3,672,579 - -2.8 3,672,584 - +1.4 3,673,308 + MPMX20_03484 0.89 +1.6 3,673,330 - -0.9
Or see this region's nucleotide sequence