Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03482

Experiment: AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03481 and MPMX20_03482 are separated by 63 nucleotidesMPMX20_03482 and MPMX20_03483 are separated by 51 nucleotidesMPMX20_03483 and MPMX20_03484 overlap by 8 nucleotidesMPMX20_03484 and MPMX20_03485 are separated by 22 nucleotides MPMX20_03481: MPMX20_03481 - Inner membrane protein YpjD, at 3,670,403 to 3,671,269 _03481 MPMX20_03482: MPMX20_03482 - hypothetical protein, at 3,671,333 to 3,672,574 _03482 MPMX20_03483: MPMX20_03483 - Protein GrpE, at 3,672,626 to 3,673,219 _03483 MPMX20_03484: MPMX20_03484 - hypothetical protein, at 3,673,212 to 3,673,319 _03484 MPMX20_03485: MPMX20_03485 - NAD kinase, at 3,673,342 to 3,674,220 _03485 Position (kb) 3671 3672 3673Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3670.361 kb on - strandat 3670.382 kb on + strandat 3670.384 kb on - strandat 3670.418 kb on - strandat 3670.425 kb on - strandat 3670.431 kb on + strandat 3670.431 kb on + strandat 3670.431 kb on + strandat 3670.439 kb on - strandat 3670.439 kb on - strandat 3670.439 kb on - strandat 3670.521 kb on + strand, within MPMX20_03481at 3670.536 kb on + strand, within MPMX20_03481at 3670.536 kb on + strand, within MPMX20_03481at 3670.536 kb on + strand, within MPMX20_03481at 3670.539 kb on - strand, within MPMX20_03481at 3670.544 kb on - strand, within MPMX20_03481at 3670.670 kb on - strand, within MPMX20_03481at 3670.754 kb on - strand, within MPMX20_03481at 3670.771 kb on - strand, within MPMX20_03481at 3670.771 kb on - strand, within MPMX20_03481at 3670.780 kb on + strand, within MPMX20_03481at 3670.780 kb on + strand, within MPMX20_03481at 3670.793 kb on - strand, within MPMX20_03481at 3670.793 kb on - strand, within MPMX20_03481at 3670.824 kb on - strand, within MPMX20_03481at 3670.855 kb on - strand, within MPMX20_03481at 3670.865 kb on + strand, within MPMX20_03481at 3670.875 kb on - strand, within MPMX20_03481at 3670.889 kb on - strand, within MPMX20_03481at 3670.908 kb on + strand, within MPMX20_03481at 3670.908 kb on + strand, within MPMX20_03481at 3670.929 kb on - strand, within MPMX20_03481at 3670.929 kb on - strand, within MPMX20_03481at 3670.959 kb on + strand, within MPMX20_03481at 3670.984 kb on + strand, within MPMX20_03481at 3670.996 kb on + strand, within MPMX20_03481at 3671.020 kb on + strand, within MPMX20_03481at 3671.025 kb on + strand, within MPMX20_03481at 3671.028 kb on - strand, within MPMX20_03481at 3671.028 kb on - strand, within MPMX20_03481at 3671.040 kb on + strand, within MPMX20_03481at 3671.040 kb on + strand, within MPMX20_03481at 3671.040 kb on + strand, within MPMX20_03481at 3671.040 kb on + strand, within MPMX20_03481at 3671.052 kb on + strand, within MPMX20_03481at 3671.057 kb on + strand, within MPMX20_03481at 3671.057 kb on + strand, within MPMX20_03481at 3671.058 kb on - strand, within MPMX20_03481at 3671.113 kb on + strand, within MPMX20_03481at 3671.144 kb on - strand, within MPMX20_03481at 3671.202 kb on - strandat 3671.286 kb on + strandat 3671.299 kb on + strandat 3671.304 kb on + strandat 3671.316 kb on + strandat 3671.324 kb on - strandat 3671.328 kb on + strandat 3671.336 kb on + strandat 3671.409 kb on + strandat 3671.417 kb on - strandat 3671.419 kb on + strandat 3671.427 kb on - strandat 3671.476 kb on - strand, within MPMX20_03482at 3671.476 kb on - strand, within MPMX20_03482at 3671.478 kb on + strand, within MPMX20_03482at 3671.481 kb on - strand, within MPMX20_03482at 3671.527 kb on + strand, within MPMX20_03482at 3671.537 kb on + strand, within MPMX20_03482at 3671.608 kb on - strand, within MPMX20_03482at 3671.690 kb on - strand, within MPMX20_03482at 3671.779 kb on - strand, within MPMX20_03482at 3671.782 kb on - strand, within MPMX20_03482at 3671.787 kb on - strand, within MPMX20_03482at 3671.895 kb on + strand, within MPMX20_03482at 3671.960 kb on + strand, within MPMX20_03482at 3671.977 kb on + strand, within MPMX20_03482at 3671.997 kb on + strand, within MPMX20_03482at 3672.000 kb on - strand, within MPMX20_03482at 3672.153 kb on + strand, within MPMX20_03482at 3672.153 kb on + strand, within MPMX20_03482at 3672.184 kb on + strand, within MPMX20_03482at 3672.375 kb on - strand, within MPMX20_03482at 3672.411 kb on + strand, within MPMX20_03482at 3672.411 kb on + strand, within MPMX20_03482at 3672.471 kb on + strandat 3672.526 kb on + strandat 3672.534 kb on - strandat 3672.561 kb on + strandat 3672.561 kb on + strandat 3672.566 kb on + strandat 3672.569 kb on - strandat 3672.569 kb on - strandat 3672.569 kb on - strandat 3672.571 kb on + strandat 3672.571 kb on + strandat 3672.579 kb on - strandat 3672.579 kb on - strandat 3672.579 kb on - strandat 3672.579 kb on - strandat 3672.579 kb on - strandat 3672.584 kb on - strandat 3673.308 kb on + strand, within MPMX20_03484at 3673.330 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001
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3,670,361 - -1.6
3,670,382 + -0.3
3,670,384 - +0.6
3,670,418 - -1.7
3,670,425 - -2.0
3,670,431 + -2.2
3,670,431 + -1.4
3,670,431 + +1.3
3,670,439 - +0.7
3,670,439 - +0.9
3,670,439 - +1.0
3,670,521 + MPMX20_03481 0.14 -2.3
3,670,536 + MPMX20_03481 0.15 -3.0
3,670,536 + MPMX20_03481 0.15 +0.8
3,670,536 + MPMX20_03481 0.15 +0.9
3,670,539 - MPMX20_03481 0.16 +0.8
3,670,544 - MPMX20_03481 0.16 -1.5
3,670,670 - MPMX20_03481 0.31 +0.2
3,670,754 - MPMX20_03481 0.40 -0.9
3,670,771 - MPMX20_03481 0.42 +1.2
3,670,771 - MPMX20_03481 0.42 -0.3
3,670,780 + MPMX20_03481 0.43 +1.5
3,670,780 + MPMX20_03481 0.43 -3.1
3,670,793 - MPMX20_03481 0.45 -0.2
3,670,793 - MPMX20_03481 0.45 +0.1
3,670,824 - MPMX20_03481 0.49 -0.9
3,670,855 - MPMX20_03481 0.52 +0.8
3,670,865 + MPMX20_03481 0.53 -0.7
3,670,875 - MPMX20_03481 0.54 -0.3
3,670,889 - MPMX20_03481 0.56 +1.6
3,670,908 + MPMX20_03481 0.58 +1.7
3,670,908 + MPMX20_03481 0.58 +1.4
3,670,929 - MPMX20_03481 0.61 -0.8
3,670,929 - MPMX20_03481 0.61 -1.8
3,670,959 + MPMX20_03481 0.64 +1.8
3,670,984 + MPMX20_03481 0.67 -0.3
3,670,996 + MPMX20_03481 0.68 -1.8
3,671,020 + MPMX20_03481 0.71 +0.6
3,671,025 + MPMX20_03481 0.72 -3.0
3,671,028 - MPMX20_03481 0.72 -2.0
3,671,028 - MPMX20_03481 0.72 +2.7
3,671,040 + MPMX20_03481 0.73 -3.8
3,671,040 + MPMX20_03481 0.73 -1.4
3,671,040 + MPMX20_03481 0.73 -2.3
3,671,040 + MPMX20_03481 0.73 -0.7
3,671,052 + MPMX20_03481 0.75 -1.8
3,671,057 + MPMX20_03481 0.75 -2.2
3,671,057 + MPMX20_03481 0.75 -3.2
3,671,058 - MPMX20_03481 0.76 +1.9
3,671,113 + MPMX20_03481 0.82 -2.1
3,671,144 - MPMX20_03481 0.85 -3.3
3,671,202 - -0.4
3,671,286 + +1.0
3,671,299 + +1.0
3,671,304 + -0.5
3,671,316 + -3.0
3,671,324 - +1.1
3,671,328 + -0.0
3,671,336 + -0.8
3,671,409 + -1.6
3,671,417 - +2.3
3,671,419 + -1.0
3,671,427 - -0.1
3,671,476 - MPMX20_03482 0.12 +1.8
3,671,476 - MPMX20_03482 0.12 -2.8
3,671,478 + MPMX20_03482 0.12 -1.2
3,671,481 - MPMX20_03482 0.12 +0.2
3,671,527 + MPMX20_03482 0.16 +0.9
3,671,537 + MPMX20_03482 0.16 -0.5
3,671,608 - MPMX20_03482 0.22 +1.2
3,671,690 - MPMX20_03482 0.29 -2.6
3,671,779 - MPMX20_03482 0.36 -0.6
3,671,782 - MPMX20_03482 0.36 -1.1
3,671,787 - MPMX20_03482 0.37 -3.6
3,671,895 + MPMX20_03482 0.45 -0.4
3,671,960 + MPMX20_03482 0.50 -0.0
3,671,977 + MPMX20_03482 0.52 -0.6
3,671,997 + MPMX20_03482 0.53 -1.2
3,672,000 - MPMX20_03482 0.54 -0.1
3,672,153 + MPMX20_03482 0.66 +0.6
3,672,153 + MPMX20_03482 0.66 -3.3
3,672,184 + MPMX20_03482 0.69 -1.0
3,672,375 - MPMX20_03482 0.84 +2.4
3,672,411 + MPMX20_03482 0.87 +0.6
3,672,411 + MPMX20_03482 0.87 -0.8
3,672,471 + -3.5
3,672,526 + +0.9
3,672,534 - -3.7
3,672,561 + -2.8
3,672,561 + +1.8
3,672,566 + -2.0
3,672,569 - -0.9
3,672,569 - +1.5
3,672,569 - +0.6
3,672,571 + +0.1
3,672,571 + +1.1
3,672,579 - -1.6
3,672,579 - +1.0
3,672,579 - -0.2
3,672,579 - +0.9
3,672,579 - -2.8
3,672,584 - +1.4
3,673,308 + MPMX20_03484 0.89 +1.6
3,673,330 - -0.9

Or see this region's nucleotide sequence