Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01768

Experiment: AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01766 and MPMX20_01767 are separated by 63 nucleotidesMPMX20_01767 and MPMX20_01768 are separated by 140 nucleotidesMPMX20_01768 and MPMX20_01769 are separated by 16 nucleotidesMPMX20_01769 and MPMX20_01770 are separated by 110 nucleotides MPMX20_01766: MPMX20_01766 - Ribosomal large subunit pseudouridine synthase C, at 1,860,342 to 1,861,262 _01766 MPMX20_01767: MPMX20_01767 - 7-methyl-GTP pyrophosphatase, at 1,861,326 to 1,861,910 _01767 MPMX20_01768: MPMX20_01768 - Large ribosomal RNA subunit accumulation protein YceD, at 1,862,051 to 1,862,572 _01768 MPMX20_01769: MPMX20_01769 - 50S ribosomal protein L32, at 1,862,589 to 1,862,762 _01769 MPMX20_01770: MPMX20_01770 - Phosphate acyltransferase, at 1,862,873 to 1,863,877 _01770 Position (kb) 1862 1863Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1861.103 kb on + strand, within MPMX20_01766at 1861.179 kb on + strandat 1861.181 kb on + strandat 1861.280 kb on + strandat 1861.325 kb on - strandat 1861.339 kb on + strandat 1861.339 kb on + strandat 1861.357 kb on - strandat 1861.411 kb on + strand, within MPMX20_01767at 1861.414 kb on - strand, within MPMX20_01767at 1861.433 kb on + strand, within MPMX20_01767at 1861.448 kb on - strand, within MPMX20_01767at 1861.448 kb on - strand, within MPMX20_01767at 1861.448 kb on - strand, within MPMX20_01767at 1861.517 kb on + strand, within MPMX20_01767at 1861.547 kb on - strand, within MPMX20_01767at 1861.581 kb on + strand, within MPMX20_01767at 1861.587 kb on - strand, within MPMX20_01767at 1861.589 kb on - strand, within MPMX20_01767at 1861.589 kb on - strand, within MPMX20_01767at 1861.589 kb on - strand, within MPMX20_01767at 1861.638 kb on - strand, within MPMX20_01767at 1861.711 kb on - strand, within MPMX20_01767at 1861.729 kb on + strand, within MPMX20_01767at 1861.784 kb on - strand, within MPMX20_01767at 1861.877 kb on + strandat 1861.878 kb on + strandat 1861.878 kb on + strandat 1861.878 kb on + strandat 1861.879 kb on + strandat 1861.924 kb on + strandat 1861.989 kb on + strandat 1862.096 kb on + strandat 1862.140 kb on + strand, within MPMX20_01768at 1862.168 kb on + strand, within MPMX20_01768at 1862.178 kb on + strand, within MPMX20_01768at 1862.180 kb on + strand, within MPMX20_01768at 1862.190 kb on + strand, within MPMX20_01768at 1862.260 kb on + strand, within MPMX20_01768at 1862.275 kb on - strand, within MPMX20_01768at 1862.326 kb on + strand, within MPMX20_01768at 1862.344 kb on + strand, within MPMX20_01768at 1862.473 kb on + strand, within MPMX20_01768at 1862.570 kb on + strandat 1862.585 kb on + strandat 1862.849 kb on + strandat 1862.857 kb on - strandat 1862.901 kb on - strandat 1863.018 kb on - strand, within MPMX20_01770at 1863.025 kb on + strand, within MPMX20_01770at 1863.033 kb on - strand, within MPMX20_01770at 1863.091 kb on + strand, within MPMX20_01770at 1863.129 kb on - strand, within MPMX20_01770at 1863.150 kb on - strand, within MPMX20_01770at 1863.239 kb on + strand, within MPMX20_01770at 1863.261 kb on - strand, within MPMX20_01770at 1863.306 kb on + strand, within MPMX20_01770at 1863.306 kb on + strand, within MPMX20_01770at 1863.314 kb on - strand, within MPMX20_01770at 1863.314 kb on - strand, within MPMX20_01770at 1863.396 kb on - strand, within MPMX20_01770at 1863.399 kb on + strand, within MPMX20_01770at 1863.416 kb on + strand, within MPMX20_01770at 1863.416 kb on + strand, within MPMX20_01770at 1863.424 kb on - strand, within MPMX20_01770at 1863.424 kb on - strand, within MPMX20_01770at 1863.424 kb on - strand, within MPMX20_01770at 1863.424 kb on - strand, within MPMX20_01770at 1863.424 kb on - strand, within MPMX20_01770at 1863.424 kb on - strand, within MPMX20_01770at 1863.424 kb on - strand, within MPMX20_01770at 1863.485 kb on + strand, within MPMX20_01770at 1863.521 kb on + strand, within MPMX20_01770at 1863.572 kb on - strand, within MPMX20_01770

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001
remove
1,861,103 + MPMX20_01766 0.83 -0.7
1,861,179 + +1.0
1,861,181 + -0.0
1,861,280 + -2.6
1,861,325 - -2.4
1,861,339 + +0.3
1,861,339 + +0.2
1,861,357 - +0.0
1,861,411 + MPMX20_01767 0.15 -4.5
1,861,414 - MPMX20_01767 0.15 +1.0
1,861,433 + MPMX20_01767 0.18 +0.0
1,861,448 - MPMX20_01767 0.21 +0.9
1,861,448 - MPMX20_01767 0.21 +1.2
1,861,448 - MPMX20_01767 0.21 +0.7
1,861,517 + MPMX20_01767 0.33 +0.9
1,861,547 - MPMX20_01767 0.38 -1.5
1,861,581 + MPMX20_01767 0.44 -2.7
1,861,587 - MPMX20_01767 0.45 +1.9
1,861,589 - MPMX20_01767 0.45 +1.6
1,861,589 - MPMX20_01767 0.45 +0.9
1,861,589 - MPMX20_01767 0.45 -2.4
1,861,638 - MPMX20_01767 0.53 -2.7
1,861,711 - MPMX20_01767 0.66 +0.3
1,861,729 + MPMX20_01767 0.69 +3.2
1,861,784 - MPMX20_01767 0.78 -0.6
1,861,877 + +2.3
1,861,878 + -3.8
1,861,878 + -1.8
1,861,878 + -2.0
1,861,879 + +0.2
1,861,924 + +0.9
1,861,989 + -2.0
1,862,096 + -0.7
1,862,140 + MPMX20_01768 0.17 -0.3
1,862,168 + MPMX20_01768 0.22 -1.5
1,862,178 + MPMX20_01768 0.24 +0.0
1,862,180 + MPMX20_01768 0.25 -1.8
1,862,190 + MPMX20_01768 0.27 -2.2
1,862,260 + MPMX20_01768 0.40 -0.0
1,862,275 - MPMX20_01768 0.43 -0.7
1,862,326 + MPMX20_01768 0.53 -1.2
1,862,344 + MPMX20_01768 0.56 -1.1
1,862,473 + MPMX20_01768 0.81 -1.0
1,862,570 + +0.8
1,862,585 + -1.0
1,862,849 + +0.1
1,862,857 - -1.6
1,862,901 - -1.0
1,863,018 - MPMX20_01770 0.14 +1.0
1,863,025 + MPMX20_01770 0.15 +1.9
1,863,033 - MPMX20_01770 0.16 -0.3
1,863,091 + MPMX20_01770 0.22 +2.0
1,863,129 - MPMX20_01770 0.25 +0.3
1,863,150 - MPMX20_01770 0.28 -0.5
1,863,239 + MPMX20_01770 0.36 +1.8
1,863,261 - MPMX20_01770 0.39 -1.9
1,863,306 + MPMX20_01770 0.43 -0.4
1,863,306 + MPMX20_01770 0.43 +0.5
1,863,314 - MPMX20_01770 0.44 -0.7
1,863,314 - MPMX20_01770 0.44 +0.7
1,863,396 - MPMX20_01770 0.52 -2.5
1,863,399 + MPMX20_01770 0.52 +1.0
1,863,416 + MPMX20_01770 0.54 +0.2
1,863,416 + MPMX20_01770 0.54 +0.8
1,863,424 - MPMX20_01770 0.55 +0.4
1,863,424 - MPMX20_01770 0.55 +2.7
1,863,424 - MPMX20_01770 0.55 -2.9
1,863,424 - MPMX20_01770 0.55 +0.8
1,863,424 - MPMX20_01770 0.55 +1.2
1,863,424 - MPMX20_01770 0.55 +2.6
1,863,424 - MPMX20_01770 0.55 -2.4
1,863,485 + MPMX20_01770 0.61 +0.6
1,863,521 + MPMX20_01770 0.64 -3.8
1,863,572 - MPMX20_01770 0.70 -2.2

Or see this region's nucleotide sequence