Experiment: AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01766 and MPMX20_01767 are separated by 63 nucleotides MPMX20_01767 and MPMX20_01768 are separated by 140 nucleotides MPMX20_01768 and MPMX20_01769 are separated by 16 nucleotides MPMX20_01769 and MPMX20_01770 are separated by 110 nucleotides
MPMX20_01766: MPMX20_01766 - Ribosomal large subunit pseudouridine synthase C, at 1,860,342 to 1,861,262
_01766
MPMX20_01767: MPMX20_01767 - 7-methyl-GTP pyrophosphatase, at 1,861,326 to 1,861,910
_01767
MPMX20_01768: MPMX20_01768 - Large ribosomal RNA subunit accumulation protein YceD, at 1,862,051 to 1,862,572
_01768
MPMX20_01769: MPMX20_01769 - 50S ribosomal protein L32, at 1,862,589 to 1,862,762
_01769
MPMX20_01770: MPMX20_01770 - Phosphate acyltransferase, at 1,862,873 to 1,863,877
_01770
Position (kb)
1862
1863 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1861.103 kb on + strand, within MPMX20_01766 at 1861.179 kb on + strand at 1861.181 kb on + strand at 1861.280 kb on + strand at 1861.325 kb on - strand at 1861.339 kb on + strand at 1861.339 kb on + strand at 1861.357 kb on - strand at 1861.411 kb on + strand, within MPMX20_01767 at 1861.414 kb on - strand, within MPMX20_01767 at 1861.433 kb on + strand, within MPMX20_01767 at 1861.448 kb on - strand, within MPMX20_01767 at 1861.448 kb on - strand, within MPMX20_01767 at 1861.448 kb on - strand, within MPMX20_01767 at 1861.517 kb on + strand, within MPMX20_01767 at 1861.547 kb on - strand, within MPMX20_01767 at 1861.581 kb on + strand, within MPMX20_01767 at 1861.587 kb on - strand, within MPMX20_01767 at 1861.589 kb on - strand, within MPMX20_01767 at 1861.589 kb on - strand, within MPMX20_01767 at 1861.589 kb on - strand, within MPMX20_01767 at 1861.638 kb on - strand, within MPMX20_01767 at 1861.711 kb on - strand, within MPMX20_01767 at 1861.729 kb on + strand, within MPMX20_01767 at 1861.784 kb on - strand, within MPMX20_01767 at 1861.877 kb on + strand at 1861.878 kb on + strand at 1861.878 kb on + strand at 1861.878 kb on + strand at 1861.879 kb on + strand at 1861.924 kb on + strand at 1861.989 kb on + strand at 1862.096 kb on + strand at 1862.140 kb on + strand, within MPMX20_01768 at 1862.168 kb on + strand, within MPMX20_01768 at 1862.178 kb on + strand, within MPMX20_01768 at 1862.180 kb on + strand, within MPMX20_01768 at 1862.190 kb on + strand, within MPMX20_01768 at 1862.260 kb on + strand, within MPMX20_01768 at 1862.275 kb on - strand, within MPMX20_01768 at 1862.326 kb on + strand, within MPMX20_01768 at 1862.344 kb on + strand, within MPMX20_01768 at 1862.473 kb on + strand, within MPMX20_01768 at 1862.570 kb on + strand at 1862.585 kb on + strand at 1862.849 kb on + strand at 1862.857 kb on - strand at 1862.901 kb on - strand at 1863.018 kb on - strand, within MPMX20_01770 at 1863.025 kb on + strand, within MPMX20_01770 at 1863.033 kb on - strand, within MPMX20_01770 at 1863.091 kb on + strand, within MPMX20_01770 at 1863.129 kb on - strand, within MPMX20_01770 at 1863.150 kb on - strand, within MPMX20_01770 at 1863.239 kb on + strand, within MPMX20_01770 at 1863.261 kb on - strand, within MPMX20_01770 at 1863.306 kb on + strand, within MPMX20_01770 at 1863.306 kb on + strand, within MPMX20_01770 at 1863.314 kb on - strand, within MPMX20_01770 at 1863.314 kb on - strand, within MPMX20_01770 at 1863.396 kb on - strand, within MPMX20_01770 at 1863.399 kb on + strand, within MPMX20_01770 at 1863.416 kb on + strand, within MPMX20_01770 at 1863.416 kb on + strand, within MPMX20_01770 at 1863.424 kb on - strand, within MPMX20_01770 at 1863.424 kb on - strand, within MPMX20_01770 at 1863.424 kb on - strand, within MPMX20_01770 at 1863.424 kb on - strand, within MPMX20_01770 at 1863.424 kb on - strand, within MPMX20_01770 at 1863.424 kb on - strand, within MPMX20_01770 at 1863.424 kb on - strand, within MPMX20_01770 at 1863.485 kb on + strand, within MPMX20_01770 at 1863.521 kb on + strand, within MPMX20_01770 at 1863.572 kb on - strand, within MPMX20_01770
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001 remove 1,861,103 + MPMX20_01766 0.83 -0.7 1,861,179 + +1.0 1,861,181 + -0.0 1,861,280 + -2.6 1,861,325 - -2.4 1,861,339 + +0.3 1,861,339 + +0.2 1,861,357 - +0.0 1,861,411 + MPMX20_01767 0.15 -4.5 1,861,414 - MPMX20_01767 0.15 +1.0 1,861,433 + MPMX20_01767 0.18 +0.0 1,861,448 - MPMX20_01767 0.21 +0.9 1,861,448 - MPMX20_01767 0.21 +1.2 1,861,448 - MPMX20_01767 0.21 +0.7 1,861,517 + MPMX20_01767 0.33 +0.9 1,861,547 - MPMX20_01767 0.38 -1.5 1,861,581 + MPMX20_01767 0.44 -2.7 1,861,587 - MPMX20_01767 0.45 +1.9 1,861,589 - MPMX20_01767 0.45 +1.6 1,861,589 - MPMX20_01767 0.45 +0.9 1,861,589 - MPMX20_01767 0.45 -2.4 1,861,638 - MPMX20_01767 0.53 -2.7 1,861,711 - MPMX20_01767 0.66 +0.3 1,861,729 + MPMX20_01767 0.69 +3.2 1,861,784 - MPMX20_01767 0.78 -0.6 1,861,877 + +2.3 1,861,878 + -3.8 1,861,878 + -1.8 1,861,878 + -2.0 1,861,879 + +0.2 1,861,924 + +0.9 1,861,989 + -2.0 1,862,096 + -0.7 1,862,140 + MPMX20_01768 0.17 -0.3 1,862,168 + MPMX20_01768 0.22 -1.5 1,862,178 + MPMX20_01768 0.24 +0.0 1,862,180 + MPMX20_01768 0.25 -1.8 1,862,190 + MPMX20_01768 0.27 -2.2 1,862,260 + MPMX20_01768 0.40 -0.0 1,862,275 - MPMX20_01768 0.43 -0.7 1,862,326 + MPMX20_01768 0.53 -1.2 1,862,344 + MPMX20_01768 0.56 -1.1 1,862,473 + MPMX20_01768 0.81 -1.0 1,862,570 + +0.8 1,862,585 + -1.0 1,862,849 + +0.1 1,862,857 - -1.6 1,862,901 - -1.0 1,863,018 - MPMX20_01770 0.14 +1.0 1,863,025 + MPMX20_01770 0.15 +1.9 1,863,033 - MPMX20_01770 0.16 -0.3 1,863,091 + MPMX20_01770 0.22 +2.0 1,863,129 - MPMX20_01770 0.25 +0.3 1,863,150 - MPMX20_01770 0.28 -0.5 1,863,239 + MPMX20_01770 0.36 +1.8 1,863,261 - MPMX20_01770 0.39 -1.9 1,863,306 + MPMX20_01770 0.43 -0.4 1,863,306 + MPMX20_01770 0.43 +0.5 1,863,314 - MPMX20_01770 0.44 -0.7 1,863,314 - MPMX20_01770 0.44 +0.7 1,863,396 - MPMX20_01770 0.52 -2.5 1,863,399 + MPMX20_01770 0.52 +1.0 1,863,416 + MPMX20_01770 0.54 +0.2 1,863,416 + MPMX20_01770 0.54 +0.8 1,863,424 - MPMX20_01770 0.55 +0.4 1,863,424 - MPMX20_01770 0.55 +2.7 1,863,424 - MPMX20_01770 0.55 -2.9 1,863,424 - MPMX20_01770 0.55 +0.8 1,863,424 - MPMX20_01770 0.55 +1.2 1,863,424 - MPMX20_01770 0.55 +2.6 1,863,424 - MPMX20_01770 0.55 -2.4 1,863,485 + MPMX20_01770 0.61 +0.6 1,863,521 + MPMX20_01770 0.64 -3.8 1,863,572 - MPMX20_01770 0.70 -2.2
Or see this region's nucleotide sequence