Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01124

Experiment: AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01123 and MPMX20_01124 overlap by 1 nucleotidesMPMX20_01124 and MPMX20_01125 are separated by 83 nucleotides MPMX20_01123: MPMX20_01123 - Phenylalanine-specific permease, at 1,183,300 to 1,184,688 _01123 MPMX20_01124: MPMX20_01124 - hypothetical protein, at 1,184,688 to 1,184,789 _01124 MPMX20_01125: MPMX20_01125 - Putative nucleoside transporter YegT, at 1,184,873 to 1,186,111 _01125 Position (kb) 1184 1185Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1183.700 kb on - strand, within MPMX20_01123at 1183.713 kb on - strand, within MPMX20_01123at 1183.722 kb on - strand, within MPMX20_01123at 1183.746 kb on + strand, within MPMX20_01123at 1183.799 kb on + strand, within MPMX20_01123at 1183.809 kb on + strand, within MPMX20_01123at 1183.817 kb on - strand, within MPMX20_01123at 1183.849 kb on - strand, within MPMX20_01123at 1183.940 kb on + strand, within MPMX20_01123at 1183.940 kb on + strand, within MPMX20_01123at 1183.982 kb on + strand, within MPMX20_01123at 1183.982 kb on + strand, within MPMX20_01123at 1184.049 kb on + strand, within MPMX20_01123at 1184.059 kb on - strand, within MPMX20_01123at 1184.066 kb on + strand, within MPMX20_01123at 1184.076 kb on + strand, within MPMX20_01123at 1184.084 kb on - strand, within MPMX20_01123at 1184.110 kb on + strand, within MPMX20_01123at 1184.120 kb on - strand, within MPMX20_01123at 1184.194 kb on + strand, within MPMX20_01123at 1184.194 kb on + strand, within MPMX20_01123at 1184.207 kb on - strand, within MPMX20_01123at 1184.238 kb on - strand, within MPMX20_01123at 1184.240 kb on - strand, within MPMX20_01123at 1184.267 kb on + strand, within MPMX20_01123at 1184.286 kb on + strand, within MPMX20_01123at 1184.402 kb on - strand, within MPMX20_01123at 1184.426 kb on + strand, within MPMX20_01123at 1184.456 kb on + strand, within MPMX20_01123at 1184.523 kb on + strand, within MPMX20_01123at 1184.531 kb on - strand, within MPMX20_01123at 1184.543 kb on - strand, within MPMX20_01123at 1184.592 kb on + strandat 1184.592 kb on + strandat 1184.600 kb on - strandat 1184.610 kb on - strandat 1184.689 kb on - strandat 1184.716 kb on + strand, within MPMX20_01124at 1184.876 kb on - strandat 1185.001 kb on - strand, within MPMX20_01125at 1185.005 kb on + strand, within MPMX20_01125at 1185.006 kb on - strand, within MPMX20_01125at 1185.122 kb on - strand, within MPMX20_01125at 1185.157 kb on + strand, within MPMX20_01125at 1185.202 kb on + strand, within MPMX20_01125at 1185.269 kb on + strand, within MPMX20_01125at 1185.399 kb on - strand, within MPMX20_01125at 1185.425 kb on + strand, within MPMX20_01125at 1185.448 kb on + strand, within MPMX20_01125at 1185.496 kb on + strand, within MPMX20_01125at 1185.496 kb on + strand, within MPMX20_01125at 1185.496 kb on + strand, within MPMX20_01125at 1185.504 kb on - strand, within MPMX20_01125at 1185.504 kb on - strand, within MPMX20_01125at 1185.509 kb on - strand, within MPMX20_01125at 1185.528 kb on - strand, within MPMX20_01125at 1185.577 kb on + strand, within MPMX20_01125at 1185.594 kb on - strand, within MPMX20_01125at 1185.610 kb on - strand, within MPMX20_01125at 1185.753 kb on - strand, within MPMX20_01125

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001
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1,183,700 - MPMX20_01123 0.29 +1.7
1,183,713 - MPMX20_01123 0.30 +0.1
1,183,722 - MPMX20_01123 0.30 +0.2
1,183,746 + MPMX20_01123 0.32 +2.4
1,183,799 + MPMX20_01123 0.36 -1.2
1,183,809 + MPMX20_01123 0.37 -1.2
1,183,817 - MPMX20_01123 0.37 -0.6
1,183,849 - MPMX20_01123 0.40 +0.5
1,183,940 + MPMX20_01123 0.46 +1.5
1,183,940 + MPMX20_01123 0.46 -3.9
1,183,982 + MPMX20_01123 0.49 +0.7
1,183,982 + MPMX20_01123 0.49 +1.4
1,184,049 + MPMX20_01123 0.54 +1.7
1,184,059 - MPMX20_01123 0.55 +0.6
1,184,066 + MPMX20_01123 0.55 +1.8
1,184,076 + MPMX20_01123 0.56 -1.8
1,184,084 - MPMX20_01123 0.56 +0.9
1,184,110 + MPMX20_01123 0.58 +2.2
1,184,120 - MPMX20_01123 0.59 -0.8
1,184,194 + MPMX20_01123 0.64 -2.1
1,184,194 + MPMX20_01123 0.64 +0.8
1,184,207 - MPMX20_01123 0.65 +0.7
1,184,238 - MPMX20_01123 0.68 -0.1
1,184,240 - MPMX20_01123 0.68 -2.2
1,184,267 + MPMX20_01123 0.70 -2.5
1,184,286 + MPMX20_01123 0.71 -0.7
1,184,402 - MPMX20_01123 0.79 +0.2
1,184,426 + MPMX20_01123 0.81 +0.7
1,184,456 + MPMX20_01123 0.83 +1.5
1,184,523 + MPMX20_01123 0.88 -1.5
1,184,531 - MPMX20_01123 0.89 -0.8
1,184,543 - MPMX20_01123 0.89 -0.3
1,184,592 + -2.7
1,184,592 + +0.3
1,184,600 - -4.3
1,184,610 - -1.6
1,184,689 - +0.4
1,184,716 + MPMX20_01124 0.27 -1.9
1,184,876 - -2.2
1,185,001 - MPMX20_01125 0.10 -0.9
1,185,005 + MPMX20_01125 0.11 +1.5
1,185,006 - MPMX20_01125 0.11 -2.9
1,185,122 - MPMX20_01125 0.20 +1.0
1,185,157 + MPMX20_01125 0.23 +1.3
1,185,202 + MPMX20_01125 0.27 -1.0
1,185,269 + MPMX20_01125 0.32 +0.1
1,185,399 - MPMX20_01125 0.42 +0.2
1,185,425 + MPMX20_01125 0.45 -0.7
1,185,448 + MPMX20_01125 0.46 -1.4
1,185,496 + MPMX20_01125 0.50 +0.6
1,185,496 + MPMX20_01125 0.50 +0.8
1,185,496 + MPMX20_01125 0.50 -2.5
1,185,504 - MPMX20_01125 0.51 +0.1
1,185,504 - MPMX20_01125 0.51 -3.9
1,185,509 - MPMX20_01125 0.51 +1.7
1,185,528 - MPMX20_01125 0.53 +1.5
1,185,577 + MPMX20_01125 0.57 -0.0
1,185,594 - MPMX20_01125 0.58 +1.3
1,185,610 - MPMX20_01125 0.59 +1.2
1,185,753 - MPMX20_01125 0.71 -2.6

Or see this region's nucleotide sequence