Experiment: AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01123 and MPMX20_01124 overlap by 1 nucleotides MPMX20_01124 and MPMX20_01125 are separated by 83 nucleotides
MPMX20_01123: MPMX20_01123 - Phenylalanine-specific permease, at 1,183,300 to 1,184,688
_01123
MPMX20_01124: MPMX20_01124 - hypothetical protein, at 1,184,688 to 1,184,789
_01124
MPMX20_01125: MPMX20_01125 - Putative nucleoside transporter YegT, at 1,184,873 to 1,186,111
_01125
Position (kb)
1184
1185 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1183.700 kb on - strand, within MPMX20_01123 at 1183.713 kb on - strand, within MPMX20_01123 at 1183.722 kb on - strand, within MPMX20_01123 at 1183.746 kb on + strand, within MPMX20_01123 at 1183.799 kb on + strand, within MPMX20_01123 at 1183.809 kb on + strand, within MPMX20_01123 at 1183.817 kb on - strand, within MPMX20_01123 at 1183.849 kb on - strand, within MPMX20_01123 at 1183.940 kb on + strand, within MPMX20_01123 at 1183.940 kb on + strand, within MPMX20_01123 at 1183.982 kb on + strand, within MPMX20_01123 at 1183.982 kb on + strand, within MPMX20_01123 at 1184.049 kb on + strand, within MPMX20_01123 at 1184.059 kb on - strand, within MPMX20_01123 at 1184.066 kb on + strand, within MPMX20_01123 at 1184.076 kb on + strand, within MPMX20_01123 at 1184.084 kb on - strand, within MPMX20_01123 at 1184.110 kb on + strand, within MPMX20_01123 at 1184.120 kb on - strand, within MPMX20_01123 at 1184.194 kb on + strand, within MPMX20_01123 at 1184.194 kb on + strand, within MPMX20_01123 at 1184.207 kb on - strand, within MPMX20_01123 at 1184.238 kb on - strand, within MPMX20_01123 at 1184.240 kb on - strand, within MPMX20_01123 at 1184.267 kb on + strand, within MPMX20_01123 at 1184.286 kb on + strand, within MPMX20_01123 at 1184.402 kb on - strand, within MPMX20_01123 at 1184.426 kb on + strand, within MPMX20_01123 at 1184.456 kb on + strand, within MPMX20_01123 at 1184.523 kb on + strand, within MPMX20_01123 at 1184.531 kb on - strand, within MPMX20_01123 at 1184.543 kb on - strand, within MPMX20_01123 at 1184.592 kb on + strand at 1184.592 kb on + strand at 1184.600 kb on - strand at 1184.610 kb on - strand at 1184.689 kb on - strand at 1184.716 kb on + strand, within MPMX20_01124 at 1184.876 kb on - strand at 1185.001 kb on - strand, within MPMX20_01125 at 1185.005 kb on + strand, within MPMX20_01125 at 1185.006 kb on - strand, within MPMX20_01125 at 1185.122 kb on - strand, within MPMX20_01125 at 1185.157 kb on + strand, within MPMX20_01125 at 1185.202 kb on + strand, within MPMX20_01125 at 1185.269 kb on + strand, within MPMX20_01125 at 1185.399 kb on - strand, within MPMX20_01125 at 1185.425 kb on + strand, within MPMX20_01125 at 1185.448 kb on + strand, within MPMX20_01125 at 1185.496 kb on + strand, within MPMX20_01125 at 1185.496 kb on + strand, within MPMX20_01125 at 1185.496 kb on + strand, within MPMX20_01125 at 1185.504 kb on - strand, within MPMX20_01125 at 1185.504 kb on - strand, within MPMX20_01125 at 1185.509 kb on - strand, within MPMX20_01125 at 1185.528 kb on - strand, within MPMX20_01125 at 1185.577 kb on + strand, within MPMX20_01125 at 1185.594 kb on - strand, within MPMX20_01125 at 1185.610 kb on - strand, within MPMX20_01125 at 1185.753 kb on - strand, within MPMX20_01125
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001 remove 1,183,700 - MPMX20_01123 0.29 +1.7 1,183,713 - MPMX20_01123 0.30 +0.1 1,183,722 - MPMX20_01123 0.30 +0.2 1,183,746 + MPMX20_01123 0.32 +2.4 1,183,799 + MPMX20_01123 0.36 -1.2 1,183,809 + MPMX20_01123 0.37 -1.2 1,183,817 - MPMX20_01123 0.37 -0.6 1,183,849 - MPMX20_01123 0.40 +0.5 1,183,940 + MPMX20_01123 0.46 +1.5 1,183,940 + MPMX20_01123 0.46 -3.9 1,183,982 + MPMX20_01123 0.49 +0.7 1,183,982 + MPMX20_01123 0.49 +1.4 1,184,049 + MPMX20_01123 0.54 +1.7 1,184,059 - MPMX20_01123 0.55 +0.6 1,184,066 + MPMX20_01123 0.55 +1.8 1,184,076 + MPMX20_01123 0.56 -1.8 1,184,084 - MPMX20_01123 0.56 +0.9 1,184,110 + MPMX20_01123 0.58 +2.2 1,184,120 - MPMX20_01123 0.59 -0.8 1,184,194 + MPMX20_01123 0.64 -2.1 1,184,194 + MPMX20_01123 0.64 +0.8 1,184,207 - MPMX20_01123 0.65 +0.7 1,184,238 - MPMX20_01123 0.68 -0.1 1,184,240 - MPMX20_01123 0.68 -2.2 1,184,267 + MPMX20_01123 0.70 -2.5 1,184,286 + MPMX20_01123 0.71 -0.7 1,184,402 - MPMX20_01123 0.79 +0.2 1,184,426 + MPMX20_01123 0.81 +0.7 1,184,456 + MPMX20_01123 0.83 +1.5 1,184,523 + MPMX20_01123 0.88 -1.5 1,184,531 - MPMX20_01123 0.89 -0.8 1,184,543 - MPMX20_01123 0.89 -0.3 1,184,592 + -2.7 1,184,592 + +0.3 1,184,600 - -4.3 1,184,610 - -1.6 1,184,689 - +0.4 1,184,716 + MPMX20_01124 0.27 -1.9 1,184,876 - -2.2 1,185,001 - MPMX20_01125 0.10 -0.9 1,185,005 + MPMX20_01125 0.11 +1.5 1,185,006 - MPMX20_01125 0.11 -2.9 1,185,122 - MPMX20_01125 0.20 +1.0 1,185,157 + MPMX20_01125 0.23 +1.3 1,185,202 + MPMX20_01125 0.27 -1.0 1,185,269 + MPMX20_01125 0.32 +0.1 1,185,399 - MPMX20_01125 0.42 +0.2 1,185,425 + MPMX20_01125 0.45 -0.7 1,185,448 + MPMX20_01125 0.46 -1.4 1,185,496 + MPMX20_01125 0.50 +0.6 1,185,496 + MPMX20_01125 0.50 +0.8 1,185,496 + MPMX20_01125 0.50 -2.5 1,185,504 - MPMX20_01125 0.51 +0.1 1,185,504 - MPMX20_01125 0.51 -3.9 1,185,509 - MPMX20_01125 0.51 +1.7 1,185,528 - MPMX20_01125 0.53 +1.5 1,185,577 + MPMX20_01125 0.57 -0.0 1,185,594 - MPMX20_01125 0.58 +1.3 1,185,610 - MPMX20_01125 0.59 +1.2 1,185,753 - MPMX20_01125 0.71 -2.6
Or see this region's nucleotide sequence