Experiment: AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00481 and MPMX20_00482 are separated by 45 nucleotides MPMX20_00482 and MPMX20_00483 are separated by 233 nucleotides MPMX20_00483 and MPMX20_00484 are separated by 313 nucleotides
MPMX20_00481: MPMX20_00481 - hypothetical protein, at 493,613 to 494,542
_00481
MPMX20_00482: MPMX20_00482 - hypothetical protein, at 494,588 to 495,232
_00482
MPMX20_00483: MPMX20_00483 - FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase, at 495,466 to 496,086
_00483
MPMX20_00484: MPMX20_00484 - D-serine/D-alanine/glycine transporter, at 496,400 to 497,809
_00484
Position (kb) 495
496
497 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 494.495 kb on + strand at 494.495 kb on + strand at 494.505 kb on + strand at 494.508 kb on - strand at 494.553 kb on + strand at 494.569 kb on + strand at 494.569 kb on + strand at 494.635 kb on + strand at 494.753 kb on - strand, within MPMX20_00482 at 494.753 kb on - strand, within MPMX20_00482 at 494.770 kb on - strand, within MPMX20_00482 at 494.832 kb on - strand, within MPMX20_00482 at 494.851 kb on + strand, within MPMX20_00482 at 494.859 kb on - strand, within MPMX20_00482 at 494.943 kb on + strand, within MPMX20_00482 at 494.951 kb on - strand, within MPMX20_00482 at 494.984 kb on + strand, within MPMX20_00482 at 494.992 kb on - strand, within MPMX20_00482 at 495.030 kb on + strand, within MPMX20_00482 at 495.125 kb on + strand, within MPMX20_00482 at 495.133 kb on - strand, within MPMX20_00482 at 495.135 kb on + strand, within MPMX20_00482 at 495.200 kb on - strand at 495.222 kb on - strand at 495.293 kb on + strand at 495.311 kb on + strand at 495.336 kb on + strand at 495.392 kb on - strand at 495.421 kb on + strand at 495.422 kb on - strand at 495.422 kb on - strand at 495.463 kb on + strand at 495.470 kb on - strand at 495.471 kb on - strand at 495.471 kb on - strand at 495.522 kb on + strand at 495.538 kb on - strand, within MPMX20_00483 at 495.549 kb on - strand, within MPMX20_00483 at 495.614 kb on + strand, within MPMX20_00483 at 495.642 kb on - strand, within MPMX20_00483 at 495.751 kb on + strand, within MPMX20_00483 at 495.759 kb on - strand, within MPMX20_00483 at 495.764 kb on - strand, within MPMX20_00483 at 495.767 kb on + strand, within MPMX20_00483 at 495.775 kb on - strand, within MPMX20_00483 at 495.798 kb on + strand, within MPMX20_00483 at 495.871 kb on + strand, within MPMX20_00483 at 495.879 kb on - strand, within MPMX20_00483 at 495.881 kb on + strand, within MPMX20_00483 at 495.889 kb on - strand, within MPMX20_00483 at 495.892 kb on - strand, within MPMX20_00483 at 495.892 kb on - strand, within MPMX20_00483 at 495.946 kb on - strand, within MPMX20_00483 at 495.998 kb on + strand, within MPMX20_00483 at 495.998 kb on + strand, within MPMX20_00483 at 496.014 kb on + strand, within MPMX20_00483 at 496.019 kb on + strand, within MPMX20_00483 at 496.046 kb on + strand at 496.049 kb on - strand at 496.054 kb on - strand at 496.131 kb on - strand at 496.138 kb on + strand at 496.138 kb on + strand at 496.207 kb on + strand at 496.215 kb on + strand at 496.217 kb on + strand at 496.231 kb on + strand at 496.262 kb on + strand at 496.274 kb on + strand at 496.300 kb on + strand at 496.350 kb on + strand at 496.350 kb on + strand at 496.350 kb on + strand at 496.350 kb on + strand at 496.350 kb on + strand at 496.355 kb on + strand at 496.358 kb on - strand at 496.358 kb on - strand at 496.369 kb on + strand at 496.377 kb on - strand at 496.378 kb on + strand at 496.378 kb on + strand at 496.386 kb on - strand at 496.386 kb on - strand at 496.409 kb on - strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.440 kb on + strand at 496.440 kb on + strand at 496.443 kb on - strand at 496.443 kb on - strand at 496.448 kb on - strand at 496.448 kb on - strand at 496.448 kb on - strand at 496.448 kb on - strand at 496.448 kb on - strand at 496.448 kb on - strand at 496.448 kb on - strand at 496.448 kb on - strand at 496.482 kb on - strand at 496.486 kb on + strand at 496.520 kb on - strand at 496.520 kb on - strand at 496.520 kb on - strand at 496.520 kb on - strand at 496.522 kb on + strand at 496.530 kb on - strand at 496.535 kb on + strand at 496.548 kb on + strand, within MPMX20_00484 at 496.689 kb on - strand, within MPMX20_00484 at 496.728 kb on + strand, within MPMX20_00484 at 496.788 kb on - strand, within MPMX20_00484 at 496.788 kb on - strand, within MPMX20_00484 at 496.788 kb on - strand, within MPMX20_00484 at 496.842 kb on + strand, within MPMX20_00484 at 496.842 kb on + strand, within MPMX20_00484 at 496.842 kb on + strand, within MPMX20_00484 at 496.842 kb on + strand, within MPMX20_00484 at 496.842 kb on + strand, within MPMX20_00484 at 496.882 kb on + strand, within MPMX20_00484 at 496.895 kb on - strand, within MPMX20_00484 at 496.895 kb on - strand, within MPMX20_00484 at 496.957 kb on + strand, within MPMX20_00484 at 496.982 kb on - strand, within MPMX20_00484 at 497.063 kb on + strand, within MPMX20_00484 at 497.079 kb on + strand, within MPMX20_00484
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001 remove 494,495 + -1.5 494,495 + -0.4 494,505 + -2.8 494,508 - +0.9 494,553 + +0.6 494,569 + +1.6 494,569 + -0.7 494,635 + -2.8 494,753 - MPMX20_00482 0.26 -0.1 494,753 - MPMX20_00482 0.26 +0.9 494,770 - MPMX20_00482 0.28 -0.1 494,832 - MPMX20_00482 0.38 +0.5 494,851 + MPMX20_00482 0.41 -1.0 494,859 - MPMX20_00482 0.42 +0.6 494,943 + MPMX20_00482 0.55 -1.5 494,951 - MPMX20_00482 0.56 -2.1 494,984 + MPMX20_00482 0.61 +1.6 494,992 - MPMX20_00482 0.63 -2.4 495,030 + MPMX20_00482 0.69 -1.0 495,125 + MPMX20_00482 0.83 -0.2 495,133 - MPMX20_00482 0.84 +0.3 495,135 + MPMX20_00482 0.85 -2.2 495,200 - +1.8 495,222 - +1.6 495,293 + +1.0 495,311 + -0.4 495,336 + -0.7 495,392 - -0.2 495,421 + -1.3 495,422 - -0.3 495,422 - -0.2 495,463 + -0.7 495,470 - -3.2 495,471 - -2.6 495,471 - +0.9 495,522 + +2.4 495,538 - MPMX20_00483 0.12 -0.9 495,549 - MPMX20_00483 0.13 -2.5 495,614 + MPMX20_00483 0.24 +2.2 495,642 - MPMX20_00483 0.28 -2.3 495,751 + MPMX20_00483 0.46 -4.2 495,759 - MPMX20_00483 0.47 -1.2 495,764 - MPMX20_00483 0.48 -0.3 495,767 + MPMX20_00483 0.48 -0.5 495,775 - MPMX20_00483 0.50 +1.0 495,798 + MPMX20_00483 0.53 -0.2 495,871 + MPMX20_00483 0.65 +0.2 495,879 - MPMX20_00483 0.67 +0.4 495,881 + MPMX20_00483 0.67 +0.2 495,889 - MPMX20_00483 0.68 +0.5 495,892 - MPMX20_00483 0.69 -2.1 495,892 - MPMX20_00483 0.69 +2.1 495,946 - MPMX20_00483 0.77 +1.2 495,998 + MPMX20_00483 0.86 -0.3 495,998 + MPMX20_00483 0.86 +0.8 496,014 + MPMX20_00483 0.88 +1.4 496,019 + MPMX20_00483 0.89 +2.0 496,046 + -2.5 496,049 - -2.8 496,054 - -3.8 496,131 - +0.4 496,138 + -0.9 496,138 + -3.0 496,207 + -3.5 496,215 + -2.0 496,217 + -1.8 496,231 + -0.2 496,262 + -2.8 496,274 + +0.8 496,300 + -2.0 496,350 + -0.8 496,350 + -1.0 496,350 + +0.7 496,350 + -0.5 496,350 + +1.2 496,355 + -1.3 496,358 - -0.6 496,358 - -0.7 496,369 + +0.5 496,377 - -1.3 496,378 + +0.9 496,378 + -3.1 496,386 - -0.5 496,386 - +2.3 496,409 - -3.8 496,411 + +1.4 496,411 + -2.6 496,411 + -1.6 496,411 + +2.0 496,411 + -2.1 496,411 + -1.0 496,411 + -0.5 496,411 + -3.6 496,411 + -1.5 496,411 + -0.3 496,419 - +1.5 496,419 - -1.8 496,419 - -2.2 496,419 - +0.3 496,419 - -0.8 496,419 - +0.9 496,419 - -0.1 496,419 - +0.7 496,419 - -1.9 496,419 - +1.4 496,419 - -2.4 496,419 - -0.5 496,419 - +1.1 496,440 + -2.9 496,440 + -3.5 496,443 - -1.0 496,443 - +0.6 496,448 - -3.8 496,448 - -1.9 496,448 - +2.8 496,448 - -4.1 496,448 - -2.6 496,448 - -1.3 496,448 - +0.5 496,448 - -0.8 496,482 - -0.1 496,486 + -1.2 496,520 - -2.4 496,520 - -0.9 496,520 - -1.9 496,520 - +1.0 496,522 + +0.7 496,530 - -0.5 496,535 + -1.7 496,548 + MPMX20_00484 0.10 +0.1 496,689 - MPMX20_00484 0.20 +2.0 496,728 + MPMX20_00484 0.23 -1.0 496,788 - MPMX20_00484 0.28 -2.1 496,788 - MPMX20_00484 0.28 -3.9 496,788 - MPMX20_00484 0.28 -1.8 496,842 + MPMX20_00484 0.31 -2.5 496,842 + MPMX20_00484 0.31 -3.3 496,842 + MPMX20_00484 0.31 -0.3 496,842 + MPMX20_00484 0.31 -2.4 496,842 + MPMX20_00484 0.31 -0.8 496,882 + MPMX20_00484 0.34 -0.0 496,895 - MPMX20_00484 0.35 -0.1 496,895 - MPMX20_00484 0.35 -0.3 496,957 + MPMX20_00484 0.40 +0.9 496,982 - MPMX20_00484 0.41 -1.2 497,063 + MPMX20_00484 0.47 +0.0 497,079 + MPMX20_00484 0.48 -2.8
Or see this region's nucleotide sequence