Experiment: AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.001
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04472 and MPMX20_04473 are separated by 2 nucleotides MPMX20_04473 and MPMX20_04474 are separated by 170 nucleotides
MPMX20_04472: MPMX20_04472 - Protein HemX, at 4,677,304 to 4,678,497
_04472
MPMX20_04473: MPMX20_04473 - Protein HemY, at 4,678,500 to 4,679,699
_04473
MPMX20_04474: MPMX20_04474 - hypothetical protein, at 4,679,870 to 4,681,081
_04474
Position (kb)
4678
4679
4680 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4677.521 kb on - strand, within MPMX20_04472 at 4677.543 kb on + strand, within MPMX20_04472 at 4677.763 kb on - strand, within MPMX20_04472 at 4677.763 kb on - strand, within MPMX20_04472 at 4677.981 kb on + strand, within MPMX20_04472 at 4678.096 kb on + strand, within MPMX20_04472 at 4678.177 kb on - strand, within MPMX20_04472 at 4678.189 kb on + strand, within MPMX20_04472 at 4678.242 kb on + strand, within MPMX20_04472 at 4678.247 kb on + strand, within MPMX20_04472 at 4678.552 kb on + strand at 4678.594 kb on - strand at 4678.616 kb on - strand at 4678.664 kb on + strand, within MPMX20_04473 at 4678.664 kb on - strand, within MPMX20_04473 at 4678.750 kb on + strand, within MPMX20_04473 at 4678.896 kb on + strand, within MPMX20_04473 at 4678.896 kb on + strand, within MPMX20_04473 at 4678.904 kb on - strand, within MPMX20_04473 at 4678.967 kb on + strand, within MPMX20_04473 at 4679.044 kb on - strand, within MPMX20_04473 at 4679.064 kb on - strand, within MPMX20_04473 at 4679.064 kb on - strand, within MPMX20_04473 at 4679.143 kb on + strand, within MPMX20_04473 at 4679.146 kb on - strand, within MPMX20_04473 at 4679.194 kb on + strand, within MPMX20_04473 at 4679.241 kb on + strand, within MPMX20_04473 at 4679.321 kb on - strand, within MPMX20_04473 at 4679.326 kb on - strand, within MPMX20_04473 at 4679.343 kb on + strand, within MPMX20_04473 at 4679.348 kb on + strand, within MPMX20_04473 at 4679.363 kb on - strand, within MPMX20_04473 at 4679.378 kb on + strand, within MPMX20_04473 at 4679.393 kb on + strand, within MPMX20_04473 at 4679.420 kb on + strand, within MPMX20_04473 at 4679.420 kb on - strand, within MPMX20_04473 at 4679.433 kb on - strand, within MPMX20_04473 at 4679.459 kb on + strand, within MPMX20_04473 at 4679.459 kb on + strand, within MPMX20_04473 at 4679.467 kb on - strand, within MPMX20_04473 at 4679.467 kb on - strand, within MPMX20_04473 at 4679.479 kb on + strand, within MPMX20_04473 at 4679.484 kb on + strand, within MPMX20_04473 at 4679.492 kb on - strand, within MPMX20_04473 at 4679.494 kb on - strand, within MPMX20_04473 at 4679.621 kb on + strand at 4679.621 kb on + strand at 4679.626 kb on + strand at 4679.626 kb on + strand at 4679.628 kb on + strand at 4679.663 kb on + strand at 4679.663 kb on + strand at 4679.718 kb on - strand at 4679.718 kb on - strand at 4679.754 kb on - strand at 4679.939 kb on + strand at 4679.940 kb on - strand at 4680.002 kb on + strand, within MPMX20_04474 at 4680.006 kb on + strand, within MPMX20_04474 at 4680.032 kb on - strand, within MPMX20_04474 at 4680.093 kb on + strand, within MPMX20_04474 at 4680.148 kb on + strand, within MPMX20_04474 at 4680.157 kb on - strand, within MPMX20_04474 at 4680.184 kb on + strand, within MPMX20_04474 at 4680.234 kb on - strand, within MPMX20_04474 at 4680.234 kb on - strand, within MPMX20_04474 at 4680.248 kb on + strand, within MPMX20_04474 at 4680.251 kb on - strand, within MPMX20_04474 at 4680.257 kb on - strand, within MPMX20_04474 at 4680.282 kb on + strand, within MPMX20_04474 at 4680.282 kb on + strand, within MPMX20_04474 at 4680.471 kb on + strand, within MPMX20_04474 at 4680.506 kb on + strand, within MPMX20_04474 at 4680.529 kb on - strand, within MPMX20_04474 at 4680.690 kb on - strand, within MPMX20_04474 at 4680.698 kb on - strand, within MPMX20_04474
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.001 remove 4,677,521 - MPMX20_04472 0.18 -1.2 4,677,543 + MPMX20_04472 0.20 -0.7 4,677,763 - MPMX20_04472 0.38 +0.4 4,677,763 - MPMX20_04472 0.38 -3.0 4,677,981 + MPMX20_04472 0.57 -1.6 4,678,096 + MPMX20_04472 0.66 -0.9 4,678,177 - MPMX20_04472 0.73 -2.6 4,678,189 + MPMX20_04472 0.74 -0.1 4,678,242 + MPMX20_04472 0.79 -3.3 4,678,247 + MPMX20_04472 0.79 -1.7 4,678,552 + +0.8 4,678,594 - -3.5 4,678,616 - -2.8 4,678,664 + MPMX20_04473 0.14 +1.0 4,678,664 - MPMX20_04473 0.14 -2.5 4,678,750 + MPMX20_04473 0.21 +1.9 4,678,896 + MPMX20_04473 0.33 -1.4 4,678,896 + MPMX20_04473 0.33 -0.9 4,678,904 - MPMX20_04473 0.34 -1.5 4,678,967 + MPMX20_04473 0.39 +1.6 4,679,044 - MPMX20_04473 0.45 -1.0 4,679,064 - MPMX20_04473 0.47 -0.3 4,679,064 - MPMX20_04473 0.47 -0.8 4,679,143 + MPMX20_04473 0.54 +0.3 4,679,146 - MPMX20_04473 0.54 -0.0 4,679,194 + MPMX20_04473 0.58 +0.9 4,679,241 + MPMX20_04473 0.62 -0.1 4,679,321 - MPMX20_04473 0.68 -0.1 4,679,326 - MPMX20_04473 0.69 -1.8 4,679,343 + MPMX20_04473 0.70 -2.2 4,679,348 + MPMX20_04473 0.71 -0.5 4,679,363 - MPMX20_04473 0.72 +0.6 4,679,378 + MPMX20_04473 0.73 -1.4 4,679,393 + MPMX20_04473 0.74 +0.2 4,679,420 + MPMX20_04473 0.77 -1.2 4,679,420 - MPMX20_04473 0.77 -3.0 4,679,433 - MPMX20_04473 0.78 -0.5 4,679,459 + MPMX20_04473 0.80 -0.1 4,679,459 + MPMX20_04473 0.80 +0.8 4,679,467 - MPMX20_04473 0.81 -1.5 4,679,467 - MPMX20_04473 0.81 -0.0 4,679,479 + MPMX20_04473 0.82 +0.8 4,679,484 + MPMX20_04473 0.82 -1.4 4,679,492 - MPMX20_04473 0.83 +1.0 4,679,494 - MPMX20_04473 0.83 -3.0 4,679,621 + +1.9 4,679,621 + +1.3 4,679,626 + +1.2 4,679,626 + +1.2 4,679,628 + -1.7 4,679,663 + +0.4 4,679,663 + +1.3 4,679,718 - +0.3 4,679,718 - +1.6 4,679,754 - +1.6 4,679,939 + -3.1 4,679,940 - -1.0 4,680,002 + MPMX20_04474 0.11 -3.0 4,680,006 + MPMX20_04474 0.11 -1.5 4,680,032 - MPMX20_04474 0.13 -0.8 4,680,093 + MPMX20_04474 0.18 -1.8 4,680,148 + MPMX20_04474 0.23 +2.1 4,680,157 - MPMX20_04474 0.24 +1.9 4,680,184 + MPMX20_04474 0.26 -1.8 4,680,234 - MPMX20_04474 0.30 -0.6 4,680,234 - MPMX20_04474 0.30 -2.0 4,680,248 + MPMX20_04474 0.31 -0.1 4,680,251 - MPMX20_04474 0.31 +1.1 4,680,257 - MPMX20_04474 0.32 +0.4 4,680,282 + MPMX20_04474 0.34 +0.3 4,680,282 + MPMX20_04474 0.34 +0.6 4,680,471 + MPMX20_04474 0.50 -1.8 4,680,506 + MPMX20_04474 0.52 +0.8 4,680,529 - MPMX20_04474 0.54 -0.3 4,680,690 - MPMX20_04474 0.68 -0.3 4,680,698 - MPMX20_04474 0.68 -3.1
Or see this region's nucleotide sequence