Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01296

Experiment: AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01294 and MPMX20_01295 are separated by 28 nucleotidesMPMX20_01295 and MPMX20_01296 are separated by 3 nucleotidesMPMX20_01296 and MPMX20_01297 are separated by 270 nucleotidesMPMX20_01297 and MPMX20_01298 are separated by 1 nucleotides MPMX20_01294: MPMX20_01294 - Peptidoglycan D,D-transpeptidase MrdA, at 1,354,930 to 1,356,831 _01294 MPMX20_01295: MPMX20_01295 - Ribosomal RNA large subunit methyltransferase H, at 1,356,860 to 1,357,327 _01295 MPMX20_01296: MPMX20_01296 - Ribosomal silencing factor RsfS, at 1,357,331 to 1,357,648 _01296 MPMX20_01297: MPMX20_01297 - Nicotinate-nucleotide adenylyltransferase, at 1,357,919 to 1,358,575 _01297 MPMX20_01298: MPMX20_01298 - DNA polymerase III subunit delta, at 1,358,577 to 1,359,608 _01298 Position (kb) 1357 1358Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1356.874 kb on - strandat 1356.881 kb on - strandat 1357.009 kb on - strand, within MPMX20_01295at 1357.028 kb on - strand, within MPMX20_01295at 1357.117 kb on - strand, within MPMX20_01295at 1357.151 kb on - strand, within MPMX20_01295at 1357.342 kb on - strandat 1357.483 kb on - strand, within MPMX20_01296at 1357.564 kb on - strand, within MPMX20_01296at 1357.593 kb on - strand, within MPMX20_01296at 1357.593 kb on - strand, within MPMX20_01296at 1357.594 kb on - strand, within MPMX20_01296at 1357.594 kb on - strand, within MPMX20_01296at 1357.643 kb on - strandat 1357.643 kb on - strandat 1357.643 kb on - strandat 1357.669 kb on - strandat 1357.700 kb on + strandat 1357.710 kb on - strandat 1357.713 kb on - strandat 1357.713 kb on - strandat 1357.767 kb on + strandat 1357.775 kb on - strandat 1357.851 kb on + strandat 1357.853 kb on + strandat 1357.853 kb on + strandat 1357.859 kb on - strandat 1357.861 kb on - strandat 1357.861 kb on - strandat 1357.861 kb on - strandat 1357.865 kb on + strandat 1357.865 kb on + strandat 1357.865 kb on + strandat 1357.865 kb on + strandat 1357.865 kb on + strandat 1357.865 kb on + strandat 1357.867 kb on - strandat 1357.867 kb on - strandat 1357.873 kb on - strandat 1357.873 kb on - strandat 1357.873 kb on - strandat 1357.873 kb on - strandat 1357.873 kb on - strandat 1357.962 kb on - strandat 1358.614 kb on - strandat 1358.624 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.001
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1,356,874 - -3.2
1,356,881 - -0.7
1,357,009 - MPMX20_01295 0.32 -0.6
1,357,028 - MPMX20_01295 0.36 -1.1
1,357,117 - MPMX20_01295 0.55 -1.5
1,357,151 - MPMX20_01295 0.62 -1.2
1,357,342 - +1.1
1,357,483 - MPMX20_01296 0.48 -0.5
1,357,564 - MPMX20_01296 0.73 -2.2
1,357,593 - MPMX20_01296 0.82 -1.1
1,357,593 - MPMX20_01296 0.82 -0.6
1,357,594 - MPMX20_01296 0.83 +0.2
1,357,594 - MPMX20_01296 0.83 -0.8
1,357,643 - -1.9
1,357,643 - -0.6
1,357,643 - +0.8
1,357,669 - -0.9
1,357,700 + +1.6
1,357,710 - +1.1
1,357,713 - +1.9
1,357,713 - +0.5
1,357,767 + -1.4
1,357,775 - -3.7
1,357,851 + -0.9
1,357,853 + -1.1
1,357,853 + -0.6
1,357,859 - -2.4
1,357,861 - +1.3
1,357,861 - +1.4
1,357,861 - +0.5
1,357,865 + -2.9
1,357,865 + +0.3
1,357,865 + -1.0
1,357,865 + -1.1
1,357,865 + -1.4
1,357,865 + +0.0
1,357,867 - +1.7
1,357,867 - -2.7
1,357,873 - -2.4
1,357,873 - -1.9
1,357,873 - -0.5
1,357,873 - -2.6
1,357,873 - -1.1
1,357,962 - +3.0
1,358,614 - +0.2
1,358,624 - +0.5

Or see this region's nucleotide sequence