Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01072

Experiment: AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01070 and MPMX20_01071 are separated by 151 nucleotidesMPMX20_01071 and MPMX20_01072 are separated by 88 nucleotidesMPMX20_01072 and MPMX20_01073 are separated by 54 nucleotidesMPMX20_01073 and MPMX20_01074 overlap by 1 nucleotides MPMX20_01070: MPMX20_01070 - Inner membrane protein YbaN, at 1,127,654 to 1,128,031 _01070 MPMX20_01071: MPMX20_01071 - Adenine phosphoribosyltransferase, at 1,128,183 to 1,128,734 _01071 MPMX20_01072: MPMX20_01072 - DNA polymerase III subunit tau, at 1,128,823 to 1,130,751 _01072 MPMX20_01073: MPMX20_01073 - Nucleoid-associated protein YbaB, at 1,130,806 to 1,131,138 _01073 MPMX20_01074: MPMX20_01074 - Recombination protein RecR, at 1,131,138 to 1,131,743 _01074 Position (kb) 1128 1129 1130 1131Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1127.868 kb on + strand, within MPMX20_01070at 1127.876 kb on - strand, within MPMX20_01070at 1127.876 kb on - strand, within MPMX20_01070at 1127.971 kb on - strand, within MPMX20_01070at 1128.035 kb on - strandat 1128.093 kb on + strandat 1128.093 kb on + strandat 1128.104 kb on + strandat 1128.150 kb on + strandat 1128.152 kb on + strandat 1128.160 kb on - strandat 1128.160 kb on - strandat 1128.185 kb on + strandat 1128.203 kb on + strandat 1128.234 kb on + strandat 1128.234 kb on + strandat 1128.239 kb on + strand, within MPMX20_01071at 1128.242 kb on - strand, within MPMX20_01071at 1128.244 kb on + strand, within MPMX20_01071at 1128.250 kb on + strand, within MPMX20_01071at 1128.280 kb on - strand, within MPMX20_01071at 1128.313 kb on + strand, within MPMX20_01071at 1128.313 kb on + strand, within MPMX20_01071at 1128.321 kb on - strand, within MPMX20_01071at 1128.321 kb on - strand, within MPMX20_01071at 1128.321 kb on - strand, within MPMX20_01071at 1128.367 kb on + strand, within MPMX20_01071at 1128.368 kb on - strand, within MPMX20_01071at 1128.410 kb on + strand, within MPMX20_01071at 1128.476 kb on + strand, within MPMX20_01071at 1128.535 kb on - strand, within MPMX20_01071at 1128.646 kb on + strand, within MPMX20_01071at 1128.654 kb on - strand, within MPMX20_01071at 1130.770 kb on - strandat 1130.792 kb on + strandat 1130.810 kb on - strandat 1130.921 kb on + strand, within MPMX20_01073at 1130.931 kb on + strand, within MPMX20_01073at 1130.931 kb on + strand, within MPMX20_01073at 1130.981 kb on + strand, within MPMX20_01073at 1131.126 kb on - strandat 1131.151 kb on - strandat 1131.153 kb on - strandat 1131.198 kb on + strandat 1131.281 kb on - strand, within MPMX20_01074at 1131.341 kb on + strand, within MPMX20_01074at 1131.347 kb on + strand, within MPMX20_01074at 1131.347 kb on + strand, within MPMX20_01074at 1131.357 kb on + strand, within MPMX20_01074at 1131.383 kb on + strand, within MPMX20_01074at 1131.401 kb on - strand, within MPMX20_01074at 1131.451 kb on + strand, within MPMX20_01074at 1131.487 kb on + strand, within MPMX20_01074at 1131.487 kb on + strand, within MPMX20_01074at 1131.487 kb on + strand, within MPMX20_01074at 1131.517 kb on + strand, within MPMX20_01074at 1131.517 kb on + strand, within MPMX20_01074at 1131.517 kb on + strand, within MPMX20_01074at 1131.517 kb on + strand, within MPMX20_01074at 1131.525 kb on - strand, within MPMX20_01074at 1131.631 kb on + strand, within MPMX20_01074at 1131.694 kb on + strandat 1131.704 kb on + strandat 1131.704 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.001
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1,127,868 + MPMX20_01070 0.57 +0.1
1,127,876 - MPMX20_01070 0.59 -0.3
1,127,876 - MPMX20_01070 0.59 +0.1
1,127,971 - MPMX20_01070 0.84 +0.8
1,128,035 - -0.4
1,128,093 + +2.0
1,128,093 + -1.1
1,128,104 + -0.5
1,128,150 + -0.8
1,128,152 + -2.1
1,128,160 - -0.4
1,128,160 - -2.1
1,128,185 + -1.3
1,128,203 + -1.0
1,128,234 + +0.3
1,128,234 + +1.7
1,128,239 + MPMX20_01071 0.10 +1.6
1,128,242 - MPMX20_01071 0.11 +0.2
1,128,244 + MPMX20_01071 0.11 -1.4
1,128,250 + MPMX20_01071 0.12 -0.2
1,128,280 - MPMX20_01071 0.18 +0.4
1,128,313 + MPMX20_01071 0.24 -0.9
1,128,313 + MPMX20_01071 0.24 -0.9
1,128,321 - MPMX20_01071 0.25 -1.9
1,128,321 - MPMX20_01071 0.25 +3.1
1,128,321 - MPMX20_01071 0.25 +0.9
1,128,367 + MPMX20_01071 0.33 -0.2
1,128,368 - MPMX20_01071 0.34 +0.1
1,128,410 + MPMX20_01071 0.41 -3.6
1,128,476 + MPMX20_01071 0.53 -2.0
1,128,535 - MPMX20_01071 0.64 -0.8
1,128,646 + MPMX20_01071 0.84 +1.6
1,128,654 - MPMX20_01071 0.85 +0.1
1,130,770 - -3.7
1,130,792 + +1.2
1,130,810 - +0.1
1,130,921 + MPMX20_01073 0.35 -1.5
1,130,931 + MPMX20_01073 0.38 -1.9
1,130,931 + MPMX20_01073 0.38 -3.7
1,130,981 + MPMX20_01073 0.53 -2.3
1,131,126 - -2.8
1,131,151 - -1.4
1,131,153 - +1.2
1,131,198 + -3.2
1,131,281 - MPMX20_01074 0.24 -0.7
1,131,341 + MPMX20_01074 0.33 -0.8
1,131,347 + MPMX20_01074 0.34 -1.6
1,131,347 + MPMX20_01074 0.34 -1.1
1,131,357 + MPMX20_01074 0.36 -0.8
1,131,383 + MPMX20_01074 0.40 -2.1
1,131,401 - MPMX20_01074 0.43 -2.2
1,131,451 + MPMX20_01074 0.52 -0.1
1,131,487 + MPMX20_01074 0.58 -0.9
1,131,487 + MPMX20_01074 0.58 -0.7
1,131,487 + MPMX20_01074 0.58 -1.8
1,131,517 + MPMX20_01074 0.63 +0.4
1,131,517 + MPMX20_01074 0.63 -1.2
1,131,517 + MPMX20_01074 0.63 +0.6
1,131,517 + MPMX20_01074 0.63 -1.0
1,131,525 - MPMX20_01074 0.64 -0.0
1,131,631 + MPMX20_01074 0.81 -1.8
1,131,694 + +0.0
1,131,704 + -1.7
1,131,704 + -0.0

Or see this region's nucleotide sequence