Experiment: AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.001
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01070 and MPMX20_01071 are separated by 151 nucleotides MPMX20_01071 and MPMX20_01072 are separated by 88 nucleotides MPMX20_01072 and MPMX20_01073 are separated by 54 nucleotides MPMX20_01073 and MPMX20_01074 overlap by 1 nucleotides
MPMX20_01070: MPMX20_01070 - Inner membrane protein YbaN, at 1,127,654 to 1,128,031
_01070
MPMX20_01071: MPMX20_01071 - Adenine phosphoribosyltransferase, at 1,128,183 to 1,128,734
_01071
MPMX20_01072: MPMX20_01072 - DNA polymerase III subunit tau, at 1,128,823 to 1,130,751
_01072
MPMX20_01073: MPMX20_01073 - Nucleoid-associated protein YbaB, at 1,130,806 to 1,131,138
_01073
MPMX20_01074: MPMX20_01074 - Recombination protein RecR, at 1,131,138 to 1,131,743
_01074
Position (kb)
1128
1129
1130
1131 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1127.868 kb on + strand, within MPMX20_01070 at 1127.876 kb on - strand, within MPMX20_01070 at 1127.876 kb on - strand, within MPMX20_01070 at 1127.971 kb on - strand, within MPMX20_01070 at 1128.035 kb on - strand at 1128.093 kb on + strand at 1128.093 kb on + strand at 1128.104 kb on + strand at 1128.150 kb on + strand at 1128.152 kb on + strand at 1128.160 kb on - strand at 1128.160 kb on - strand at 1128.185 kb on + strand at 1128.203 kb on + strand at 1128.234 kb on + strand at 1128.234 kb on + strand at 1128.239 kb on + strand, within MPMX20_01071 at 1128.242 kb on - strand, within MPMX20_01071 at 1128.244 kb on + strand, within MPMX20_01071 at 1128.250 kb on + strand, within MPMX20_01071 at 1128.280 kb on - strand, within MPMX20_01071 at 1128.313 kb on + strand, within MPMX20_01071 at 1128.313 kb on + strand, within MPMX20_01071 at 1128.321 kb on - strand, within MPMX20_01071 at 1128.321 kb on - strand, within MPMX20_01071 at 1128.321 kb on - strand, within MPMX20_01071 at 1128.367 kb on + strand, within MPMX20_01071 at 1128.368 kb on - strand, within MPMX20_01071 at 1128.410 kb on + strand, within MPMX20_01071 at 1128.476 kb on + strand, within MPMX20_01071 at 1128.535 kb on - strand, within MPMX20_01071 at 1128.646 kb on + strand, within MPMX20_01071 at 1128.654 kb on - strand, within MPMX20_01071 at 1130.770 kb on - strand at 1130.792 kb on + strand at 1130.810 kb on - strand at 1130.921 kb on + strand, within MPMX20_01073 at 1130.931 kb on + strand, within MPMX20_01073 at 1130.931 kb on + strand, within MPMX20_01073 at 1130.981 kb on + strand, within MPMX20_01073 at 1131.126 kb on - strand at 1131.151 kb on - strand at 1131.153 kb on - strand at 1131.198 kb on + strand at 1131.281 kb on - strand, within MPMX20_01074 at 1131.341 kb on + strand, within MPMX20_01074 at 1131.347 kb on + strand, within MPMX20_01074 at 1131.347 kb on + strand, within MPMX20_01074 at 1131.357 kb on + strand, within MPMX20_01074 at 1131.383 kb on + strand, within MPMX20_01074 at 1131.401 kb on - strand, within MPMX20_01074 at 1131.451 kb on + strand, within MPMX20_01074 at 1131.487 kb on + strand, within MPMX20_01074 at 1131.487 kb on + strand, within MPMX20_01074 at 1131.487 kb on + strand, within MPMX20_01074 at 1131.517 kb on + strand, within MPMX20_01074 at 1131.517 kb on + strand, within MPMX20_01074 at 1131.517 kb on + strand, within MPMX20_01074 at 1131.517 kb on + strand, within MPMX20_01074 at 1131.525 kb on - strand, within MPMX20_01074 at 1131.631 kb on + strand, within MPMX20_01074 at 1131.694 kb on + strand at 1131.704 kb on + strand at 1131.704 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.001 remove 1,127,868 + MPMX20_01070 0.57 +0.1 1,127,876 - MPMX20_01070 0.59 -0.3 1,127,876 - MPMX20_01070 0.59 +0.1 1,127,971 - MPMX20_01070 0.84 +0.8 1,128,035 - -0.4 1,128,093 + +2.0 1,128,093 + -1.1 1,128,104 + -0.5 1,128,150 + -0.8 1,128,152 + -2.1 1,128,160 - -0.4 1,128,160 - -2.1 1,128,185 + -1.3 1,128,203 + -1.0 1,128,234 + +0.3 1,128,234 + +1.7 1,128,239 + MPMX20_01071 0.10 +1.6 1,128,242 - MPMX20_01071 0.11 +0.2 1,128,244 + MPMX20_01071 0.11 -1.4 1,128,250 + MPMX20_01071 0.12 -0.2 1,128,280 - MPMX20_01071 0.18 +0.4 1,128,313 + MPMX20_01071 0.24 -0.9 1,128,313 + MPMX20_01071 0.24 -0.9 1,128,321 - MPMX20_01071 0.25 -1.9 1,128,321 - MPMX20_01071 0.25 +3.1 1,128,321 - MPMX20_01071 0.25 +0.9 1,128,367 + MPMX20_01071 0.33 -0.2 1,128,368 - MPMX20_01071 0.34 +0.1 1,128,410 + MPMX20_01071 0.41 -3.6 1,128,476 + MPMX20_01071 0.53 -2.0 1,128,535 - MPMX20_01071 0.64 -0.8 1,128,646 + MPMX20_01071 0.84 +1.6 1,128,654 - MPMX20_01071 0.85 +0.1 1,130,770 - -3.7 1,130,792 + +1.2 1,130,810 - +0.1 1,130,921 + MPMX20_01073 0.35 -1.5 1,130,931 + MPMX20_01073 0.38 -1.9 1,130,931 + MPMX20_01073 0.38 -3.7 1,130,981 + MPMX20_01073 0.53 -2.3 1,131,126 - -2.8 1,131,151 - -1.4 1,131,153 - +1.2 1,131,198 + -3.2 1,131,281 - MPMX20_01074 0.24 -0.7 1,131,341 + MPMX20_01074 0.33 -0.8 1,131,347 + MPMX20_01074 0.34 -1.6 1,131,347 + MPMX20_01074 0.34 -1.1 1,131,357 + MPMX20_01074 0.36 -0.8 1,131,383 + MPMX20_01074 0.40 -2.1 1,131,401 - MPMX20_01074 0.43 -2.2 1,131,451 + MPMX20_01074 0.52 -0.1 1,131,487 + MPMX20_01074 0.58 -0.9 1,131,487 + MPMX20_01074 0.58 -0.7 1,131,487 + MPMX20_01074 0.58 -1.8 1,131,517 + MPMX20_01074 0.63 +0.4 1,131,517 + MPMX20_01074 0.63 -1.2 1,131,517 + MPMX20_01074 0.63 +0.6 1,131,517 + MPMX20_01074 0.63 -1.0 1,131,525 - MPMX20_01074 0.64 -0.0 1,131,631 + MPMX20_01074 0.81 -1.8 1,131,694 + +0.0 1,131,704 + -1.7 1,131,704 + -0.0
Or see this region's nucleotide sequence