Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00753

Experiment: AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00751 and MPMX20_00752 are separated by 29 nucleotidesMPMX20_00752 and MPMX20_00753 are separated by 12 nucleotidesMPMX20_00753 and MPMX20_00754 are separated by 128 nucleotides MPMX20_00751: MPMX20_00751 - Co-chaperone protein DjlA, at 778,005 to 778,820 _00751 MPMX20_00752: MPMX20_00752 - Dual-specificity RNA pseudouridine synthase RluA, at 778,850 to 779,509 _00752 MPMX20_00753: MPMX20_00753 - RNA polymerase-associated protein RapA, at 779,522 to 782,428 _00753 MPMX20_00754: MPMX20_00754 - DNA polymerase II, at 782,557 to 784,914 _00754 Position (kb) 779 780 781 782 783Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 778.568 kb on - strand, within MPMX20_00751at 778.624 kb on + strand, within MPMX20_00751at 778.629 kb on - strand, within MPMX20_00751at 778.669 kb on + strand, within MPMX20_00751at 778.672 kb on - strand, within MPMX20_00751at 778.686 kb on - strand, within MPMX20_00751at 778.688 kb on + strand, within MPMX20_00751at 778.693 kb on - strand, within MPMX20_00751at 778.757 kb on + strandat 778.790 kb on - strandat 778.900 kb on + strandat 778.908 kb on - strandat 779.064 kb on + strand, within MPMX20_00752at 779.064 kb on + strand, within MPMX20_00752at 779.064 kb on + strand, within MPMX20_00752at 779.064 kb on + strand, within MPMX20_00752at 779.072 kb on - strand, within MPMX20_00752at 779.072 kb on - strand, within MPMX20_00752at 779.081 kb on + strand, within MPMX20_00752at 779.081 kb on + strand, within MPMX20_00752at 779.089 kb on - strand, within MPMX20_00752at 779.124 kb on + strand, within MPMX20_00752at 779.285 kb on - strand, within MPMX20_00752at 779.314 kb on - strand, within MPMX20_00752at 779.334 kb on + strand, within MPMX20_00752at 779.367 kb on - strand, within MPMX20_00752at 779.386 kb on - strand, within MPMX20_00752at 779.436 kb on + strand, within MPMX20_00752at 779.444 kb on - strandat 779.504 kb on - strandat 779.526 kb on - strandat 779.575 kb on + strandat 779.575 kb on + strandat 779.575 kb on + strandat 779.583 kb on - strandat 779.672 kb on + strandat 779.715 kb on + strandat 779.783 kb on + strandat 779.798 kb on + strandat 779.952 kb on - strand, within MPMX20_00753at 779.999 kb on - strand, within MPMX20_00753at 780.088 kb on + strand, within MPMX20_00753at 780.096 kb on + strand, within MPMX20_00753at 780.104 kb on - strand, within MPMX20_00753at 780.106 kb on + strand, within MPMX20_00753at 780.204 kb on - strand, within MPMX20_00753at 780.206 kb on + strand, within MPMX20_00753at 780.214 kb on - strand, within MPMX20_00753at 780.263 kb on - strand, within MPMX20_00753at 780.273 kb on - strand, within MPMX20_00753at 780.290 kb on + strand, within MPMX20_00753at 780.298 kb on - strand, within MPMX20_00753at 780.326 kb on + strand, within MPMX20_00753at 780.334 kb on - strand, within MPMX20_00753at 780.353 kb on - strand, within MPMX20_00753at 780.423 kb on + strand, within MPMX20_00753at 780.423 kb on + strand, within MPMX20_00753at 780.431 kb on - strand, within MPMX20_00753at 780.459 kb on + strand, within MPMX20_00753at 780.494 kb on - strand, within MPMX20_00753at 780.575 kb on - strand, within MPMX20_00753at 780.663 kb on - strand, within MPMX20_00753at 780.757 kb on + strand, within MPMX20_00753at 780.775 kb on - strand, within MPMX20_00753at 780.862 kb on + strand, within MPMX20_00753at 780.902 kb on + strand, within MPMX20_00753at 780.942 kb on + strand, within MPMX20_00753at 780.964 kb on + strand, within MPMX20_00753at 780.979 kb on - strand, within MPMX20_00753at 781.051 kb on - strand, within MPMX20_00753at 781.053 kb on - strand, within MPMX20_00753at 781.100 kb on - strand, within MPMX20_00753at 781.100 kb on - strand, within MPMX20_00753at 781.314 kb on + strand, within MPMX20_00753at 781.314 kb on + strand, within MPMX20_00753at 781.322 kb on - strand, within MPMX20_00753at 781.455 kb on + strand, within MPMX20_00753at 781.491 kb on - strand, within MPMX20_00753at 781.566 kb on + strand, within MPMX20_00753at 781.574 kb on - strand, within MPMX20_00753at 781.597 kb on + strand, within MPMX20_00753at 781.709 kb on + strand, within MPMX20_00753at 781.717 kb on - strand, within MPMX20_00753at 781.717 kb on - strand, within MPMX20_00753at 781.717 kb on - strand, within MPMX20_00753at 781.756 kb on + strand, within MPMX20_00753at 781.756 kb on + strand, within MPMX20_00753at 781.756 kb on + strand, within MPMX20_00753at 781.769 kb on - strand, within MPMX20_00753at 781.855 kb on - strand, within MPMX20_00753at 781.886 kb on - strand, within MPMX20_00753at 781.892 kb on + strand, within MPMX20_00753at 781.900 kb on - strand, within MPMX20_00753at 781.954 kb on + strand, within MPMX20_00753at 781.963 kb on + strand, within MPMX20_00753at 781.971 kb on - strand, within MPMX20_00753at 782.004 kb on + strand, within MPMX20_00753at 782.009 kb on + strand, within MPMX20_00753at 782.017 kb on - strand, within MPMX20_00753at 782.047 kb on + strand, within MPMX20_00753at 782.110 kb on - strand, within MPMX20_00753at 782.145 kb on + strandat 782.162 kb on + strandat 782.170 kb on - strandat 782.170 kb on - strandat 782.170 kb on - strandat 782.180 kb on - strandat 782.191 kb on + strandat 782.217 kb on + strandat 782.217 kb on + strandat 782.232 kb on - strandat 782.370 kb on - strandat 782.416 kb on + strandat 782.416 kb on + strandat 782.436 kb on - strandat 782.438 kb on + strandat 782.520 kb on + strandat 782.572 kb on - strandat 782.579 kb on + strandat 782.587 kb on - strandat 782.587 kb on - strandat 782.654 kb on - strandat 782.660 kb on + strandat 782.672 kb on + strandat 782.702 kb on - strandat 782.776 kb on - strandat 782.803 kb on - strand, within MPMX20_00754at 782.917 kb on + strand, within MPMX20_00754at 782.925 kb on - strand, within MPMX20_00754at 782.940 kb on + strand, within MPMX20_00754at 782.949 kb on + strand, within MPMX20_00754at 782.957 kb on - strand, within MPMX20_00754at 782.957 kb on - strand, within MPMX20_00754at 783.002 kb on + strand, within MPMX20_00754at 783.002 kb on + strand, within MPMX20_00754at 783.038 kb on - strand, within MPMX20_00754at 783.068 kb on + strand, within MPMX20_00754at 783.078 kb on + strand, within MPMX20_00754at 783.078 kb on + strand, within MPMX20_00754at 783.078 kb on + strand, within MPMX20_00754at 783.078 kb on + strand, within MPMX20_00754at 783.078 kb on + strand, within MPMX20_00754at 783.078 kb on + strand, within MPMX20_00754at 783.081 kb on - strand, within MPMX20_00754at 783.086 kb on - strand, within MPMX20_00754at 783.143 kb on - strand, within MPMX20_00754at 783.154 kb on - strand, within MPMX20_00754at 783.156 kb on - strand, within MPMX20_00754at 783.187 kb on - strand, within MPMX20_00754at 783.245 kb on + strand, within MPMX20_00754at 783.245 kb on + strand, within MPMX20_00754at 783.245 kb on + strand, within MPMX20_00754at 783.245 kb on + strand, within MPMX20_00754at 783.253 kb on - strand, within MPMX20_00754at 783.253 kb on - strand, within MPMX20_00754at 783.253 kb on - strand, within MPMX20_00754at 783.253 kb on - strand, within MPMX20_00754at 783.253 kb on - strand, within MPMX20_00754at 783.290 kb on + strand, within MPMX20_00754at 783.298 kb on - strand, within MPMX20_00754at 783.346 kb on - strand, within MPMX20_00754at 783.358 kb on - strand, within MPMX20_00754at 783.397 kb on + strand, within MPMX20_00754at 783.405 kb on - strand, within MPMX20_00754

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.001
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778,568 - MPMX20_00751 0.69 -0.2
778,624 + MPMX20_00751 0.76 +0.7
778,629 - MPMX20_00751 0.76 -0.7
778,669 + MPMX20_00751 0.81 +0.3
778,672 - MPMX20_00751 0.82 -0.2
778,686 - MPMX20_00751 0.83 -1.4
778,688 + MPMX20_00751 0.84 +0.3
778,693 - MPMX20_00751 0.84 +1.2
778,757 + -0.6
778,790 - +0.1
778,900 + -1.9
778,908 - -0.2
779,064 + MPMX20_00752 0.32 -0.8
779,064 + MPMX20_00752 0.32 -2.5
779,064 + MPMX20_00752 0.32 +0.4
779,064 + MPMX20_00752 0.32 -2.4
779,072 - MPMX20_00752 0.34 +2.4
779,072 - MPMX20_00752 0.34 -1.9
779,081 + MPMX20_00752 0.35 -1.2
779,081 + MPMX20_00752 0.35 -2.1
779,089 - MPMX20_00752 0.36 +0.6
779,124 + MPMX20_00752 0.42 -1.3
779,285 - MPMX20_00752 0.66 +0.1
779,314 - MPMX20_00752 0.70 +1.4
779,334 + MPMX20_00752 0.73 -1.9
779,367 - MPMX20_00752 0.78 -0.5
779,386 - MPMX20_00752 0.81 +0.1
779,436 + MPMX20_00752 0.89 +0.6
779,444 - -1.1
779,504 - -2.1
779,526 - +0.1
779,575 + -0.8
779,575 + -2.3
779,575 + +0.2
779,583 - -2.4
779,672 + -0.8
779,715 + +0.6
779,783 + -1.5
779,798 + -0.0
779,952 - MPMX20_00753 0.15 -0.8
779,999 - MPMX20_00753 0.16 -1.1
780,088 + MPMX20_00753 0.19 -0.4
780,096 + MPMX20_00753 0.20 +0.8
780,104 - MPMX20_00753 0.20 -3.1
780,106 + MPMX20_00753 0.20 -3.1
780,204 - MPMX20_00753 0.23 +0.1
780,206 + MPMX20_00753 0.24 -1.0
780,214 - MPMX20_00753 0.24 -1.4
780,263 - MPMX20_00753 0.25 -0.4
780,273 - MPMX20_00753 0.26 -2.1
780,290 + MPMX20_00753 0.26 -0.3
780,298 - MPMX20_00753 0.27 -1.7
780,326 + MPMX20_00753 0.28 -2.3
780,334 - MPMX20_00753 0.28 -1.9
780,353 - MPMX20_00753 0.29 -1.8
780,423 + MPMX20_00753 0.31 -0.2
780,423 + MPMX20_00753 0.31 -0.6
780,431 - MPMX20_00753 0.31 +0.4
780,459 + MPMX20_00753 0.32 +1.1
780,494 - MPMX20_00753 0.33 -1.2
780,575 - MPMX20_00753 0.36 +0.2
780,663 - MPMX20_00753 0.39 -3.1
780,757 + MPMX20_00753 0.42 -1.0
780,775 - MPMX20_00753 0.43 +0.8
780,862 + MPMX20_00753 0.46 +0.2
780,902 + MPMX20_00753 0.47 -2.0
780,942 + MPMX20_00753 0.49 -1.2
780,964 + MPMX20_00753 0.50 -1.5
780,979 - MPMX20_00753 0.50 -0.5
781,051 - MPMX20_00753 0.53 -1.1
781,053 - MPMX20_00753 0.53 +1.0
781,100 - MPMX20_00753 0.54 -1.9
781,100 - MPMX20_00753 0.54 -1.6
781,314 + MPMX20_00753 0.62 -2.2
781,314 + MPMX20_00753 0.62 -2.5
781,322 - MPMX20_00753 0.62 +0.4
781,455 + MPMX20_00753 0.66 +0.9
781,491 - MPMX20_00753 0.68 -1.2
781,566 + MPMX20_00753 0.70 -1.3
781,574 - MPMX20_00753 0.71 -1.3
781,597 + MPMX20_00753 0.71 +0.2
781,709 + MPMX20_00753 0.75 -2.2
781,717 - MPMX20_00753 0.76 +0.8
781,717 - MPMX20_00753 0.76 -0.5
781,717 - MPMX20_00753 0.76 -1.1
781,756 + MPMX20_00753 0.77 -3.8
781,756 + MPMX20_00753 0.77 -0.9
781,756 + MPMX20_00753 0.77 +1.1
781,769 - MPMX20_00753 0.77 -1.4
781,855 - MPMX20_00753 0.80 -2.6
781,886 - MPMX20_00753 0.81 -0.6
781,892 + MPMX20_00753 0.82 -2.3
781,900 - MPMX20_00753 0.82 -4.0
781,954 + MPMX20_00753 0.84 -1.7
781,963 + MPMX20_00753 0.84 -2.2
781,971 - MPMX20_00753 0.84 -2.5
782,004 + MPMX20_00753 0.85 -0.3
782,009 + MPMX20_00753 0.86 -0.2
782,017 - MPMX20_00753 0.86 -2.1
782,047 + MPMX20_00753 0.87 -1.9
782,110 - MPMX20_00753 0.89 -0.4
782,145 + -1.5
782,162 + +0.6
782,170 - -0.2
782,170 - -3.0
782,170 - -2.9
782,180 - +0.3
782,191 + +2.0
782,217 + +0.1
782,217 + -2.4
782,232 - +0.8
782,370 - +0.6
782,416 + -2.2
782,416 + -2.0
782,436 - +0.2
782,438 + -0.7
782,520 + -2.0
782,572 - -0.9
782,579 + +0.4
782,587 - -0.4
782,587 - -1.4
782,654 - +0.8
782,660 + +0.4
782,672 + +1.6
782,702 - +1.3
782,776 - +0.3
782,803 - MPMX20_00754 0.10 +1.6
782,917 + MPMX20_00754 0.15 +1.2
782,925 - MPMX20_00754 0.16 -0.7
782,940 + MPMX20_00754 0.16 +0.9
782,949 + MPMX20_00754 0.17 -0.4
782,957 - MPMX20_00754 0.17 -0.6
782,957 - MPMX20_00754 0.17 +1.1
783,002 + MPMX20_00754 0.19 +1.3
783,002 + MPMX20_00754 0.19 +2.4
783,038 - MPMX20_00754 0.20 +0.6
783,068 + MPMX20_00754 0.22 +0.0
783,078 + MPMX20_00754 0.22 +0.1
783,078 + MPMX20_00754 0.22 +1.3
783,078 + MPMX20_00754 0.22 +0.6
783,078 + MPMX20_00754 0.22 +0.8
783,078 + MPMX20_00754 0.22 -1.2
783,078 + MPMX20_00754 0.22 +0.4
783,081 - MPMX20_00754 0.22 +1.3
783,086 - MPMX20_00754 0.22 -0.3
783,143 - MPMX20_00754 0.25 -1.8
783,154 - MPMX20_00754 0.25 -0.8
783,156 - MPMX20_00754 0.25 -0.3
783,187 - MPMX20_00754 0.27 +1.3
783,245 + MPMX20_00754 0.29 -1.1
783,245 + MPMX20_00754 0.29 -2.4
783,245 + MPMX20_00754 0.29 -1.6
783,245 + MPMX20_00754 0.29 +1.1
783,253 - MPMX20_00754 0.30 -2.4
783,253 - MPMX20_00754 0.30 +0.6
783,253 - MPMX20_00754 0.30 +3.7
783,253 - MPMX20_00754 0.30 +0.4
783,253 - MPMX20_00754 0.30 +1.1
783,290 + MPMX20_00754 0.31 +0.8
783,298 - MPMX20_00754 0.31 -1.1
783,346 - MPMX20_00754 0.33 +0.9
783,358 - MPMX20_00754 0.34 -2.3
783,397 + MPMX20_00754 0.36 -0.7
783,405 - MPMX20_00754 0.36 +0.8

Or see this region's nucleotide sequence