Experiment: AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.001
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00463 and MPMX20_00464 overlap by 4 nucleotides MPMX20_00464 and MPMX20_00465 are separated by 172 nucleotides MPMX20_00465 and MPMX20_00466 are separated by 136 nucleotides
MPMX20_00463: MPMX20_00463 - Putative acyl-CoA dehydrogenase AidB, at 479,233 to 480,855
_00463
MPMX20_00464: MPMX20_00464 - hypothetical protein, at 480,852 to 482,783
_00464
MPMX20_00465: MPMX20_00465 - hypothetical protein, at 482,956 to 483,243
_00465
MPMX20_00466: MPMX20_00466 - Lipoprotein BsmA, at 483,380 to 483,688
_00466
Position (kb) 480
481
482
483 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 479.852 kb on + strand, within MPMX20_00463 at 479.852 kb on + strand, within MPMX20_00463 at 479.916 kb on + strand, within MPMX20_00463 at 479.922 kb on + strand, within MPMX20_00463 at 479.966 kb on - strand, within MPMX20_00463 at 479.976 kb on + strand, within MPMX20_00463 at 479.976 kb on + strand, within MPMX20_00463 at 479.997 kb on - strand, within MPMX20_00463 at 480.085 kb on + strand, within MPMX20_00463 at 480.119 kb on + strand, within MPMX20_00463 at 480.157 kb on - strand, within MPMX20_00463 at 480.183 kb on + strand, within MPMX20_00463 at 480.202 kb on + strand, within MPMX20_00463 at 480.245 kb on + strand, within MPMX20_00463 at 480.250 kb on + strand, within MPMX20_00463 at 480.250 kb on + strand, within MPMX20_00463 at 480.250 kb on + strand, within MPMX20_00463 at 480.250 kb on + strand, within MPMX20_00463 at 480.258 kb on - strand, within MPMX20_00463 at 480.294 kb on + strand, within MPMX20_00463 at 480.300 kb on - strand, within MPMX20_00463 at 480.326 kb on - strand, within MPMX20_00463 at 480.331 kb on - strand, within MPMX20_00463 at 480.442 kb on + strand, within MPMX20_00463 at 480.446 kb on + strand, within MPMX20_00463 at 480.454 kb on - strand, within MPMX20_00463 at 480.464 kb on - strand, within MPMX20_00463 at 480.487 kb on + strand, within MPMX20_00463 at 480.508 kb on + strand, within MPMX20_00463 at 480.516 kb on - strand, within MPMX20_00463 at 480.612 kb on - strand, within MPMX20_00463 at 480.612 kb on - strand, within MPMX20_00463 at 480.739 kb on + strand at 480.751 kb on + strand at 480.764 kb on - strand at 480.775 kb on + strand at 480.801 kb on - strand at 480.880 kb on - strand at 480.885 kb on + strand at 480.890 kb on + strand at 480.890 kb on + strand at 480.919 kb on - strand at 480.957 kb on - strand at 480.957 kb on - strand at 480.993 kb on + strand at 480.996 kb on - strand at 480.999 kb on + strand at 481.001 kb on - strand at 481.030 kb on + strand at 481.120 kb on - strand, within MPMX20_00464 at 481.165 kb on - strand, within MPMX20_00464 at 481.229 kb on - strand, within MPMX20_00464 at 481.255 kb on + strand, within MPMX20_00464 at 481.255 kb on + strand, within MPMX20_00464 at 481.255 kb on + strand, within MPMX20_00464 at 481.255 kb on + strand, within MPMX20_00464 at 481.263 kb on - strand, within MPMX20_00464 at 481.267 kb on + strand, within MPMX20_00464 at 481.343 kb on - strand, within MPMX20_00464 at 481.391 kb on - strand, within MPMX20_00464 at 481.400 kb on - strand, within MPMX20_00464 at 481.481 kb on + strand, within MPMX20_00464 at 481.510 kb on + strand, within MPMX20_00464 at 481.510 kb on - strand, within MPMX20_00464 at 481.510 kb on - strand, within MPMX20_00464 at 481.510 kb on - strand, within MPMX20_00464 at 481.510 kb on - strand, within MPMX20_00464 at 481.510 kb on - strand, within MPMX20_00464 at 481.510 kb on - strand, within MPMX20_00464 at 481.674 kb on - strand, within MPMX20_00464 at 481.852 kb on + strand, within MPMX20_00464 at 481.852 kb on + strand, within MPMX20_00464 at 481.940 kb on + strand, within MPMX20_00464 at 481.945 kb on + strand, within MPMX20_00464 at 481.994 kb on + strand, within MPMX20_00464 at 482.007 kb on - strand, within MPMX20_00464 at 482.012 kb on - strand, within MPMX20_00464 at 482.035 kb on + strand, within MPMX20_00464 at 482.098 kb on + strand, within MPMX20_00464 at 482.116 kb on - strand, within MPMX20_00464 at 482.140 kb on + strand, within MPMX20_00464 at 482.140 kb on + strand, within MPMX20_00464 at 482.222 kb on - strand, within MPMX20_00464 at 482.224 kb on + strand, within MPMX20_00464 at 482.241 kb on + strand, within MPMX20_00464 at 482.244 kb on - strand, within MPMX20_00464 at 482.249 kb on - strand, within MPMX20_00464 at 482.265 kb on - strand, within MPMX20_00464 at 482.299 kb on + strand, within MPMX20_00464 at 482.304 kb on + strand, within MPMX20_00464 at 482.326 kb on - strand, within MPMX20_00464 at 482.348 kb on + strand, within MPMX20_00464 at 482.359 kb on - strand, within MPMX20_00464 at 482.384 kb on + strand, within MPMX20_00464 at 482.393 kb on + strand, within MPMX20_00464 at 482.442 kb on + strand, within MPMX20_00464 at 482.467 kb on + strand, within MPMX20_00464 at 482.560 kb on + strand, within MPMX20_00464 at 482.565 kb on + strand, within MPMX20_00464 at 482.566 kb on + strand, within MPMX20_00464 at 482.590 kb on + strand at 482.598 kb on - strand at 482.616 kb on - strand at 482.744 kb on + strand at 482.744 kb on + strand at 482.744 kb on + strand at 482.751 kb on + strand at 482.756 kb on + strand at 482.759 kb on - strand at 482.764 kb on - strand at 482.764 kb on - strand at 482.803 kb on + strand at 482.805 kb on + strand at 482.974 kb on - strand at 482.984 kb on - strand at 482.995 kb on + strand, within MPMX20_00465 at 483.028 kb on + strand, within MPMX20_00465 at 483.043 kb on - strand, within MPMX20_00465 at 483.086 kb on - strand, within MPMX20_00465 at 483.117 kb on - strand, within MPMX20_00465 at 483.149 kb on - strand, within MPMX20_00465 at 483.166 kb on + strand, within MPMX20_00465 at 483.173 kb on + strand, within MPMX20_00465 at 483.181 kb on - strand, within MPMX20_00465 at 483.181 kb on - strand, within MPMX20_00465 at 483.186 kb on + strand, within MPMX20_00465 at 483.196 kb on + strand, within MPMX20_00465 at 483.196 kb on + strand, within MPMX20_00465 at 483.196 kb on + strand, within MPMX20_00465 at 483.204 kb on - strand, within MPMX20_00465 at 483.204 kb on - strand, within MPMX20_00465 at 483.204 kb on - strand, within MPMX20_00465 at 483.204 kb on - strand, within MPMX20_00465 at 483.213 kb on + strand, within MPMX20_00465 at 483.216 kb on - strand at 483.262 kb on + strand at 483.267 kb on + strand at 483.290 kb on - strand at 483.306 kb on + strand at 483.323 kb on + strand at 483.341 kb on - strand at 483.351 kb on - strand at 483.353 kb on + strand at 483.353 kb on + strand at 483.361 kb on - strand at 483.361 kb on - strand at 483.393 kb on + strand at 483.405 kb on + strand at 483.405 kb on + strand at 483.411 kb on - strand, within MPMX20_00466 at 483.413 kb on - strand, within MPMX20_00466 at 483.415 kb on + strand, within MPMX20_00466 at 483.418 kb on - strand, within MPMX20_00466 at 483.418 kb on - strand, within MPMX20_00466 at 483.418 kb on - strand, within MPMX20_00466 at 483.467 kb on + strand, within MPMX20_00466 at 483.477 kb on + strand, within MPMX20_00466 at 483.485 kb on - strand, within MPMX20_00466 at 483.485 kb on - strand, within MPMX20_00466 at 483.492 kb on + strand, within MPMX20_00466 at 483.513 kb on - strand, within MPMX20_00466 at 483.516 kb on + strand, within MPMX20_00466 at 483.521 kb on + strand, within MPMX20_00466 at 483.526 kb on + strand, within MPMX20_00466 at 483.548 kb on + strand, within MPMX20_00466 at 483.548 kb on + strand, within MPMX20_00466 at 483.555 kb on - strand, within MPMX20_00466 at 483.556 kb on - strand, within MPMX20_00466 at 483.565 kb on + strand, within MPMX20_00466 at 483.586 kb on + strand, within MPMX20_00466 at 483.594 kb on - strand, within MPMX20_00466 at 483.618 kb on + strand, within MPMX20_00466 at 483.626 kb on - strand, within MPMX20_00466 at 483.646 kb on + strand, within MPMX20_00466 at 483.647 kb on - strand, within MPMX20_00466 at 483.677 kb on + strand at 483.711 kb on + strand at 483.711 kb on + strand at 483.714 kb on - strand at 483.719 kb on - strand at 483.719 kb on - strand at 483.754 kb on + strand at 483.762 kb on - strand at 483.762 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.001 remove 479,852 + MPMX20_00463 0.38 -0.5 479,852 + MPMX20_00463 0.38 -0.0 479,916 + MPMX20_00463 0.42 +1.0 479,922 + MPMX20_00463 0.42 -0.5 479,966 - MPMX20_00463 0.45 -2.0 479,976 + MPMX20_00463 0.46 -2.3 479,976 + MPMX20_00463 0.46 +1.4 479,997 - MPMX20_00463 0.47 +1.0 480,085 + MPMX20_00463 0.52 +0.5 480,119 + MPMX20_00463 0.55 -1.9 480,157 - MPMX20_00463 0.57 -2.1 480,183 + MPMX20_00463 0.59 +2.0 480,202 + MPMX20_00463 0.60 +0.8 480,245 + MPMX20_00463 0.62 +2.1 480,250 + MPMX20_00463 0.63 -0.3 480,250 + MPMX20_00463 0.63 -2.6 480,250 + MPMX20_00463 0.63 +1.0 480,250 + MPMX20_00463 0.63 -1.4 480,258 - MPMX20_00463 0.63 -0.1 480,294 + MPMX20_00463 0.65 -1.4 480,300 - MPMX20_00463 0.66 -3.0 480,326 - MPMX20_00463 0.67 -0.9 480,331 - MPMX20_00463 0.68 +0.8 480,442 + MPMX20_00463 0.74 +1.6 480,446 + MPMX20_00463 0.75 -0.7 480,454 - MPMX20_00463 0.75 -1.1 480,464 - MPMX20_00463 0.76 -3.5 480,487 + MPMX20_00463 0.77 -2.1 480,508 + MPMX20_00463 0.79 -0.9 480,516 - MPMX20_00463 0.79 -0.3 480,612 - MPMX20_00463 0.85 +0.5 480,612 - MPMX20_00463 0.85 +0.6 480,739 + -2.2 480,751 + -0.5 480,764 - -1.8 480,775 + -2.0 480,801 - -0.1 480,880 - -1.2 480,885 + -1.4 480,890 + -0.8 480,890 + -0.9 480,919 - -1.0 480,957 - +0.7 480,957 - +0.7 480,993 + -0.4 480,996 - +0.4 480,999 + -0.2 481,001 - -1.4 481,030 + +1.5 481,120 - MPMX20_00464 0.14 -2.0 481,165 - MPMX20_00464 0.16 +0.3 481,229 - MPMX20_00464 0.20 -0.6 481,255 + MPMX20_00464 0.21 +2.1 481,255 + MPMX20_00464 0.21 -0.2 481,255 + MPMX20_00464 0.21 +3.5 481,255 + MPMX20_00464 0.21 +3.0 481,263 - MPMX20_00464 0.21 +1.2 481,267 + MPMX20_00464 0.21 +2.4 481,343 - MPMX20_00464 0.25 +0.2 481,391 - MPMX20_00464 0.28 -1.8 481,400 - MPMX20_00464 0.28 -0.4 481,481 + MPMX20_00464 0.33 +2.0 481,510 + MPMX20_00464 0.34 -0.2 481,510 - MPMX20_00464 0.34 -1.2 481,510 - MPMX20_00464 0.34 +1.4 481,510 - MPMX20_00464 0.34 +0.5 481,510 - MPMX20_00464 0.34 -0.2 481,510 - MPMX20_00464 0.34 -1.2 481,510 - MPMX20_00464 0.34 -1.6 481,674 - MPMX20_00464 0.43 +1.7 481,852 + MPMX20_00464 0.52 -0.6 481,852 + MPMX20_00464 0.52 -2.4 481,940 + MPMX20_00464 0.56 +2.0 481,945 + MPMX20_00464 0.57 -0.2 481,994 + MPMX20_00464 0.59 +2.2 482,007 - MPMX20_00464 0.60 -1.0 482,012 - MPMX20_00464 0.60 -1.6 482,035 + MPMX20_00464 0.61 +1.8 482,098 + MPMX20_00464 0.64 -1.6 482,116 - MPMX20_00464 0.65 -1.2 482,140 + MPMX20_00464 0.67 +3.2 482,140 + MPMX20_00464 0.67 -1.0 482,222 - MPMX20_00464 0.71 +0.7 482,224 + MPMX20_00464 0.71 -3.3 482,241 + MPMX20_00464 0.72 -0.1 482,244 - MPMX20_00464 0.72 -2.5 482,249 - MPMX20_00464 0.72 -1.4 482,265 - MPMX20_00464 0.73 +0.7 482,299 + MPMX20_00464 0.75 -0.4 482,304 + MPMX20_00464 0.75 -1.1 482,326 - MPMX20_00464 0.76 +1.9 482,348 + MPMX20_00464 0.77 -0.4 482,359 - MPMX20_00464 0.78 +1.6 482,384 + MPMX20_00464 0.79 -0.5 482,393 + MPMX20_00464 0.80 +1.2 482,442 + MPMX20_00464 0.82 +0.2 482,467 + MPMX20_00464 0.84 +1.1 482,560 + MPMX20_00464 0.88 +0.7 482,565 + MPMX20_00464 0.89 +2.6 482,566 + MPMX20_00464 0.89 +0.1 482,590 + +1.4 482,598 - -0.3 482,616 - -0.2 482,744 + -0.2 482,744 + -0.1 482,744 + -4.0 482,751 + +2.1 482,756 + +1.5 482,759 - +0.5 482,764 - +0.9 482,764 - -1.5 482,803 + -1.0 482,805 + -1.0 482,974 - +1.5 482,984 - -1.7 482,995 + MPMX20_00465 0.14 -0.7 483,028 + MPMX20_00465 0.25 +0.3 483,043 - MPMX20_00465 0.30 +1.2 483,086 - MPMX20_00465 0.45 -1.3 483,117 - MPMX20_00465 0.56 -2.1 483,149 - MPMX20_00465 0.67 +1.0 483,166 + MPMX20_00465 0.73 +1.0 483,173 + MPMX20_00465 0.75 -0.6 483,181 - MPMX20_00465 0.78 +0.2 483,181 - MPMX20_00465 0.78 +1.0 483,186 + MPMX20_00465 0.80 +2.2 483,196 + MPMX20_00465 0.83 +0.1 483,196 + MPMX20_00465 0.83 +0.7 483,196 + MPMX20_00465 0.83 +2.3 483,204 - MPMX20_00465 0.86 -0.8 483,204 - MPMX20_00465 0.86 +0.8 483,204 - MPMX20_00465 0.86 +1.0 483,204 - MPMX20_00465 0.86 -2.6 483,213 + MPMX20_00465 0.89 -3.3 483,216 - -2.4 483,262 + -2.5 483,267 + -0.8 483,290 - +0.2 483,306 + -2.3 483,323 + -0.4 483,341 - -0.2 483,351 - +0.9 483,353 + -0.4 483,353 + -1.7 483,361 - -1.9 483,361 - -1.7 483,393 + +1.1 483,405 + -0.7 483,405 + -1.2 483,411 - MPMX20_00466 0.10 -0.4 483,413 - MPMX20_00466 0.11 -2.8 483,415 + MPMX20_00466 0.11 -0.1 483,418 - MPMX20_00466 0.12 +1.7 483,418 - MPMX20_00466 0.12 +1.0 483,418 - MPMX20_00466 0.12 -0.2 483,467 + MPMX20_00466 0.28 +0.7 483,477 + MPMX20_00466 0.31 +1.1 483,485 - MPMX20_00466 0.34 -0.9 483,485 - MPMX20_00466 0.34 +1.9 483,492 + MPMX20_00466 0.36 +0.8 483,513 - MPMX20_00466 0.43 -3.0 483,516 + MPMX20_00466 0.44 -2.5 483,521 + MPMX20_00466 0.46 -0.8 483,526 + MPMX20_00466 0.47 +2.1 483,548 + MPMX20_00466 0.54 -2.4 483,548 + MPMX20_00466 0.54 -3.9 483,555 - MPMX20_00466 0.57 +1.1 483,556 - MPMX20_00466 0.57 +0.7 483,565 + MPMX20_00466 0.60 -1.8 483,586 + MPMX20_00466 0.67 +0.3 483,594 - MPMX20_00466 0.69 +3.4 483,618 + MPMX20_00466 0.77 -0.2 483,626 - MPMX20_00466 0.80 -1.0 483,646 + MPMX20_00466 0.86 -0.4 483,647 - MPMX20_00466 0.86 -0.3 483,677 + +0.1 483,711 + +0.4 483,711 + +2.3 483,714 - +1.9 483,719 - -3.5 483,719 - +0.0 483,754 + +0.3 483,762 - -0.9 483,762 - +0.6
Or see this region's nucleotide sequence