Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04625

Experiment: AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04623 and MPMX20_04624 are separated by 151 nucleotidesMPMX20_04624 and MPMX20_04625 are separated by 90 nucleotidesMPMX20_04625 and MPMX20_04626 are separated by 374 nucleotides MPMX20_04623: MPMX20_04623 - Aspartate--ammonia ligase, at 4,843,156 to 4,844,148 _04623 MPMX20_04624: MPMX20_04624 - Regulatory protein AsnC, at 4,844,300 to 4,844,758 _04624 MPMX20_04625: MPMX20_04625 - Protein MioC, at 4,844,849 to 4,845,298 _04625 MPMX20_04626: MPMX20_04626 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, at 4,845,673 to 4,847,562 _04626 Position (kb) 4844 4845 4846Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4843.856 kb on + strand, within MPMX20_04623at 4843.862 kb on - strand, within MPMX20_04623at 4843.876 kb on + strand, within MPMX20_04623at 4843.884 kb on - strand, within MPMX20_04623at 4843.943 kb on + strand, within MPMX20_04623at 4843.951 kb on - strand, within MPMX20_04623at 4843.951 kb on - strand, within MPMX20_04623at 4844.014 kb on - strand, within MPMX20_04623at 4844.047 kb on + strand, within MPMX20_04623at 4844.072 kb on - strandat 4844.331 kb on + strandat 4844.414 kb on + strand, within MPMX20_04624at 4844.473 kb on - strand, within MPMX20_04624at 4844.478 kb on + strand, within MPMX20_04624at 4844.478 kb on + strand, within MPMX20_04624at 4844.478 kb on + strand, within MPMX20_04624at 4844.478 kb on + strand, within MPMX20_04624at 4844.478 kb on + strand, within MPMX20_04624at 4844.478 kb on + strand, within MPMX20_04624at 4844.486 kb on - strand, within MPMX20_04624at 4844.486 kb on - strand, within MPMX20_04624at 4844.486 kb on - strand, within MPMX20_04624at 4844.486 kb on - strand, within MPMX20_04624at 4844.486 kb on - strand, within MPMX20_04624at 4844.486 kb on - strand, within MPMX20_04624at 4844.491 kb on + strand, within MPMX20_04624at 4844.496 kb on - strand, within MPMX20_04624at 4844.501 kb on - strand, within MPMX20_04624at 4844.501 kb on - strand, within MPMX20_04624at 4844.501 kb on - strand, within MPMX20_04624at 4844.540 kb on - strand, within MPMX20_04624at 4844.552 kb on + strand, within MPMX20_04624at 4844.560 kb on - strand, within MPMX20_04624at 4844.563 kb on + strand, within MPMX20_04624at 4844.566 kb on - strand, within MPMX20_04624at 4844.576 kb on + strand, within MPMX20_04624at 4844.593 kb on + strand, within MPMX20_04624at 4844.604 kb on - strand, within MPMX20_04624at 4844.611 kb on - strand, within MPMX20_04624at 4844.630 kb on + strand, within MPMX20_04624at 4844.856 kb on + strandat 4844.856 kb on + strandat 4844.864 kb on - strandat 4844.864 kb on - strandat 4844.879 kb on + strandat 4844.887 kb on - strandat 4844.887 kb on - strandat 4844.887 kb on - strandat 4844.887 kb on - strandat 4844.887 kb on - strandat 4844.931 kb on - strand, within MPMX20_04625at 4844.931 kb on - strand, within MPMX20_04625at 4844.931 kb on - strand, within MPMX20_04625at 4844.969 kb on - strand, within MPMX20_04625at 4845.009 kb on + strand, within MPMX20_04625at 4845.086 kb on - strand, within MPMX20_04625at 4845.112 kb on + strand, within MPMX20_04625at 4845.123 kb on + strand, within MPMX20_04625at 4845.123 kb on + strand, within MPMX20_04625at 4845.186 kb on + strand, within MPMX20_04625at 4845.207 kb on - strand, within MPMX20_04625at 4845.580 kb on + strandat 4845.581 kb on + strandat 4845.589 kb on - strandat 4845.624 kb on + strandat 4845.661 kb on + strandat 4846.179 kb on + strand, within MPMX20_04626at 4846.179 kb on + strand, within MPMX20_04626at 4846.221 kb on + strand, within MPMX20_04626at 4846.223 kb on + strand, within MPMX20_04626

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.01
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4,843,856 + MPMX20_04623 0.70 -0.4
4,843,862 - MPMX20_04623 0.71 -1.7
4,843,876 + MPMX20_04623 0.73 +0.4
4,843,884 - MPMX20_04623 0.73 -0.4
4,843,943 + MPMX20_04623 0.79 -0.5
4,843,951 - MPMX20_04623 0.80 +0.7
4,843,951 - MPMX20_04623 0.80 -0.3
4,844,014 - MPMX20_04623 0.86 +0.3
4,844,047 + MPMX20_04623 0.90 -0.7
4,844,072 - -1.9
4,844,331 + -0.4
4,844,414 + MPMX20_04624 0.25 +0.3
4,844,473 - MPMX20_04624 0.38 +0.1
4,844,478 + MPMX20_04624 0.39 -1.8
4,844,478 + MPMX20_04624 0.39 -0.2
4,844,478 + MPMX20_04624 0.39 -0.3
4,844,478 + MPMX20_04624 0.39 -1.1
4,844,478 + MPMX20_04624 0.39 +0.0
4,844,478 + MPMX20_04624 0.39 -0.1
4,844,486 - MPMX20_04624 0.41 +1.1
4,844,486 - MPMX20_04624 0.41 +0.0
4,844,486 - MPMX20_04624 0.41 +1.0
4,844,486 - MPMX20_04624 0.41 -0.1
4,844,486 - MPMX20_04624 0.41 +0.2
4,844,486 - MPMX20_04624 0.41 -0.8
4,844,491 + MPMX20_04624 0.42 +0.4
4,844,496 - MPMX20_04624 0.43 -0.4
4,844,501 - MPMX20_04624 0.44 +2.0
4,844,501 - MPMX20_04624 0.44 -1.2
4,844,501 - MPMX20_04624 0.44 +0.9
4,844,540 - MPMX20_04624 0.52 +0.4
4,844,552 + MPMX20_04624 0.55 -0.6
4,844,560 - MPMX20_04624 0.57 +0.3
4,844,563 + MPMX20_04624 0.57 +0.8
4,844,566 - MPMX20_04624 0.58 -0.4
4,844,576 + MPMX20_04624 0.60 +0.2
4,844,593 + MPMX20_04624 0.64 -2.0
4,844,604 - MPMX20_04624 0.66 +1.2
4,844,611 - MPMX20_04624 0.68 -1.5
4,844,630 + MPMX20_04624 0.72 +0.3
4,844,856 + -2.2
4,844,856 + -0.3
4,844,864 - -1.2
4,844,864 - -0.3
4,844,879 + -0.4
4,844,887 - -1.9
4,844,887 - -1.5
4,844,887 - -1.2
4,844,887 - -2.2
4,844,887 - -2.0
4,844,931 - MPMX20_04625 0.18 -1.7
4,844,931 - MPMX20_04625 0.18 -2.1
4,844,931 - MPMX20_04625 0.18 -3.0
4,844,969 - MPMX20_04625 0.27 -2.0
4,845,009 + MPMX20_04625 0.36 -0.7
4,845,086 - MPMX20_04625 0.53 -1.6
4,845,112 + MPMX20_04625 0.58 -3.4
4,845,123 + MPMX20_04625 0.61 -2.7
4,845,123 + MPMX20_04625 0.61 -0.6
4,845,186 + MPMX20_04625 0.75 -0.5
4,845,207 - MPMX20_04625 0.80 +0.1
4,845,580 + -0.6
4,845,581 + +3.4
4,845,589 - +1.8
4,845,624 + -1.0
4,845,661 + -1.5
4,846,179 + MPMX20_04626 0.27 -0.8
4,846,179 + MPMX20_04626 0.27 -1.0
4,846,221 + MPMX20_04626 0.29 -0.7
4,846,223 + MPMX20_04626 0.29 -1.2

Or see this region's nucleotide sequence