Experiment: AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04623 and MPMX20_04624 are separated by 151 nucleotides MPMX20_04624 and MPMX20_04625 are separated by 90 nucleotides MPMX20_04625 and MPMX20_04626 are separated by 374 nucleotides
MPMX20_04623: MPMX20_04623 - Aspartate--ammonia ligase, at 4,843,156 to 4,844,148
_04623
MPMX20_04624: MPMX20_04624 - Regulatory protein AsnC, at 4,844,300 to 4,844,758
_04624
MPMX20_04625: MPMX20_04625 - Protein MioC, at 4,844,849 to 4,845,298
_04625
MPMX20_04626: MPMX20_04626 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, at 4,845,673 to 4,847,562
_04626
Position (kb)
4844
4845
4846 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4843.856 kb on + strand, within MPMX20_04623 at 4843.862 kb on - strand, within MPMX20_04623 at 4843.876 kb on + strand, within MPMX20_04623 at 4843.884 kb on - strand, within MPMX20_04623 at 4843.943 kb on + strand, within MPMX20_04623 at 4843.951 kb on - strand, within MPMX20_04623 at 4843.951 kb on - strand, within MPMX20_04623 at 4844.014 kb on - strand, within MPMX20_04623 at 4844.047 kb on + strand, within MPMX20_04623 at 4844.072 kb on - strand at 4844.331 kb on + strand at 4844.414 kb on + strand, within MPMX20_04624 at 4844.473 kb on - strand, within MPMX20_04624 at 4844.478 kb on + strand, within MPMX20_04624 at 4844.478 kb on + strand, within MPMX20_04624 at 4844.478 kb on + strand, within MPMX20_04624 at 4844.478 kb on + strand, within MPMX20_04624 at 4844.478 kb on + strand, within MPMX20_04624 at 4844.478 kb on + strand, within MPMX20_04624 at 4844.486 kb on - strand, within MPMX20_04624 at 4844.486 kb on - strand, within MPMX20_04624 at 4844.486 kb on - strand, within MPMX20_04624 at 4844.486 kb on - strand, within MPMX20_04624 at 4844.486 kb on - strand, within MPMX20_04624 at 4844.486 kb on - strand, within MPMX20_04624 at 4844.491 kb on + strand, within MPMX20_04624 at 4844.496 kb on - strand, within MPMX20_04624 at 4844.501 kb on - strand, within MPMX20_04624 at 4844.501 kb on - strand, within MPMX20_04624 at 4844.501 kb on - strand, within MPMX20_04624 at 4844.540 kb on - strand, within MPMX20_04624 at 4844.552 kb on + strand, within MPMX20_04624 at 4844.560 kb on - strand, within MPMX20_04624 at 4844.563 kb on + strand, within MPMX20_04624 at 4844.566 kb on - strand, within MPMX20_04624 at 4844.576 kb on + strand, within MPMX20_04624 at 4844.593 kb on + strand, within MPMX20_04624 at 4844.604 kb on - strand, within MPMX20_04624 at 4844.611 kb on - strand, within MPMX20_04624 at 4844.630 kb on + strand, within MPMX20_04624 at 4844.856 kb on + strand at 4844.856 kb on + strand at 4844.864 kb on - strand at 4844.864 kb on - strand at 4844.879 kb on + strand at 4844.887 kb on - strand at 4844.887 kb on - strand at 4844.887 kb on - strand at 4844.887 kb on - strand at 4844.887 kb on - strand at 4844.931 kb on - strand, within MPMX20_04625 at 4844.931 kb on - strand, within MPMX20_04625 at 4844.931 kb on - strand, within MPMX20_04625 at 4844.969 kb on - strand, within MPMX20_04625 at 4845.009 kb on + strand, within MPMX20_04625 at 4845.086 kb on - strand, within MPMX20_04625 at 4845.112 kb on + strand, within MPMX20_04625 at 4845.123 kb on + strand, within MPMX20_04625 at 4845.123 kb on + strand, within MPMX20_04625 at 4845.186 kb on + strand, within MPMX20_04625 at 4845.207 kb on - strand, within MPMX20_04625 at 4845.580 kb on + strand at 4845.581 kb on + strand at 4845.589 kb on - strand at 4845.624 kb on + strand at 4845.661 kb on + strand at 4846.179 kb on + strand, within MPMX20_04626 at 4846.179 kb on + strand, within MPMX20_04626 at 4846.221 kb on + strand, within MPMX20_04626 at 4846.223 kb on + strand, within MPMX20_04626
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.01 remove 4,843,856 + MPMX20_04623 0.70 -0.4 4,843,862 - MPMX20_04623 0.71 -1.7 4,843,876 + MPMX20_04623 0.73 +0.4 4,843,884 - MPMX20_04623 0.73 -0.4 4,843,943 + MPMX20_04623 0.79 -0.5 4,843,951 - MPMX20_04623 0.80 +0.7 4,843,951 - MPMX20_04623 0.80 -0.3 4,844,014 - MPMX20_04623 0.86 +0.3 4,844,047 + MPMX20_04623 0.90 -0.7 4,844,072 - -1.9 4,844,331 + -0.4 4,844,414 + MPMX20_04624 0.25 +0.3 4,844,473 - MPMX20_04624 0.38 +0.1 4,844,478 + MPMX20_04624 0.39 -1.8 4,844,478 + MPMX20_04624 0.39 -0.2 4,844,478 + MPMX20_04624 0.39 -0.3 4,844,478 + MPMX20_04624 0.39 -1.1 4,844,478 + MPMX20_04624 0.39 +0.0 4,844,478 + MPMX20_04624 0.39 -0.1 4,844,486 - MPMX20_04624 0.41 +1.1 4,844,486 - MPMX20_04624 0.41 +0.0 4,844,486 - MPMX20_04624 0.41 +1.0 4,844,486 - MPMX20_04624 0.41 -0.1 4,844,486 - MPMX20_04624 0.41 +0.2 4,844,486 - MPMX20_04624 0.41 -0.8 4,844,491 + MPMX20_04624 0.42 +0.4 4,844,496 - MPMX20_04624 0.43 -0.4 4,844,501 - MPMX20_04624 0.44 +2.0 4,844,501 - MPMX20_04624 0.44 -1.2 4,844,501 - MPMX20_04624 0.44 +0.9 4,844,540 - MPMX20_04624 0.52 +0.4 4,844,552 + MPMX20_04624 0.55 -0.6 4,844,560 - MPMX20_04624 0.57 +0.3 4,844,563 + MPMX20_04624 0.57 +0.8 4,844,566 - MPMX20_04624 0.58 -0.4 4,844,576 + MPMX20_04624 0.60 +0.2 4,844,593 + MPMX20_04624 0.64 -2.0 4,844,604 - MPMX20_04624 0.66 +1.2 4,844,611 - MPMX20_04624 0.68 -1.5 4,844,630 + MPMX20_04624 0.72 +0.3 4,844,856 + -2.2 4,844,856 + -0.3 4,844,864 - -1.2 4,844,864 - -0.3 4,844,879 + -0.4 4,844,887 - -1.9 4,844,887 - -1.5 4,844,887 - -1.2 4,844,887 - -2.2 4,844,887 - -2.0 4,844,931 - MPMX20_04625 0.18 -1.7 4,844,931 - MPMX20_04625 0.18 -2.1 4,844,931 - MPMX20_04625 0.18 -3.0 4,844,969 - MPMX20_04625 0.27 -2.0 4,845,009 + MPMX20_04625 0.36 -0.7 4,845,086 - MPMX20_04625 0.53 -1.6 4,845,112 + MPMX20_04625 0.58 -3.4 4,845,123 + MPMX20_04625 0.61 -2.7 4,845,123 + MPMX20_04625 0.61 -0.6 4,845,186 + MPMX20_04625 0.75 -0.5 4,845,207 - MPMX20_04625 0.80 +0.1 4,845,580 + -0.6 4,845,581 + +3.4 4,845,589 - +1.8 4,845,624 + -1.0 4,845,661 + -1.5 4,846,179 + MPMX20_04626 0.27 -0.8 4,846,179 + MPMX20_04626 0.27 -1.0 4,846,221 + MPMX20_04626 0.29 -0.7 4,846,223 + MPMX20_04626 0.29 -1.2
Or see this region's nucleotide sequence