Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02951

Experiment: AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02948 and MPMX20_02949 are separated by 104 nucleotidesMPMX20_02949 and MPMX20_02950 are separated by 114 nucleotidesMPMX20_02950 and MPMX20_02951 are separated by 302 nucleotidesMPMX20_02951 and MPMX20_02952 overlap by 16 nucleotides MPMX20_02948: MPMX20_02948 - Transcriptional regulatory protein RcsA, at 3,075,854 to 3,076,477 _02948 MPMX20_02949: MPMX20_02949 - Protein DsrB, at 3,076,582 to 3,076,770 _02949 MPMX20_02950: MPMX20_02950 - hypothetical protein, at 3,076,885 to 3,077,127 _02950 MPMX20_02951: MPMX20_02951 - Mannosyl-3-phosphoglycerate phosphatase, at 3,077,430 to 3,078,230 _02951 MPMX20_02952: MPMX20_02952 - putative diguanylate cyclase DgcQ, at 3,078,215 to 3,080,035 _02952 Position (kb) 3077 3078 3079Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3076.432 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.433 kb on - strandat 3076.437 kb on + strandat 3076.445 kb on - strandat 3076.445 kb on - strandat 3076.445 kb on - strandat 3076.445 kb on - strandat 3076.445 kb on - strandat 3076.445 kb on - strandat 3076.445 kb on - strandat 3076.445 kb on - strandat 3076.445 kb on - strandat 3076.445 kb on - strandat 3076.445 kb on - strandat 3076.465 kb on - strandat 3076.503 kb on + strandat 3076.504 kb on + strandat 3076.511 kb on + strandat 3076.511 kb on + strandat 3076.512 kb on - strandat 3076.512 kb on - strandat 3076.512 kb on - strandat 3076.512 kb on - strandat 3076.512 kb on - strandat 3076.512 kb on - strandat 3076.519 kb on - strandat 3076.519 kb on - strandat 3076.524 kb on - strandat 3076.529 kb on - strandat 3076.538 kb on + strandat 3076.538 kb on + strandat 3076.538 kb on + strandat 3076.543 kb on + strandat 3076.543 kb on + strandat 3076.546 kb on - strandat 3076.546 kb on - strandat 3076.546 kb on - strandat 3076.548 kb on + strandat 3076.556 kb on - strandat 3076.556 kb on - strandat 3076.556 kb on - strandat 3076.556 kb on - strandat 3076.556 kb on - strandat 3076.556 kb on - strandat 3076.556 kb on - strandat 3076.556 kb on - strandat 3076.582 kb on - strandat 3076.590 kb on - strandat 3076.590 kb on - strandat 3076.590 kb on - strandat 3076.603 kb on + strand, within MPMX20_02949at 3076.617 kb on + strand, within MPMX20_02949at 3076.654 kb on + strand, within MPMX20_02949at 3076.654 kb on + strand, within MPMX20_02949at 3076.654 kb on + strand, within MPMX20_02949at 3076.661 kb on + strand, within MPMX20_02949at 3076.662 kb on - strand, within MPMX20_02949at 3076.675 kb on + strand, within MPMX20_02949at 3076.708 kb on + strand, within MPMX20_02949at 3076.708 kb on + strand, within MPMX20_02949at 3076.752 kb on + strandat 3076.765 kb on - strandat 3076.772 kb on - strandat 3076.796 kb on + strandat 3076.804 kb on - strandat 3076.804 kb on - strandat 3076.804 kb on - strandat 3076.804 kb on - strandat 3076.857 kb on + strandat 3076.857 kb on + strandat 3076.857 kb on + strandat 3076.857 kb on + strandat 3076.857 kb on + strandat 3076.865 kb on - strandat 3076.865 kb on - strandat 3076.865 kb on - strandat 3076.865 kb on - strandat 3076.865 kb on - strandat 3076.865 kb on - strandat 3076.865 kb on - strandat 3076.915 kb on + strand, within MPMX20_02950at 3076.915 kb on + strand, within MPMX20_02950at 3076.950 kb on - strand, within MPMX20_02950at 3076.955 kb on + strand, within MPMX20_02950at 3076.981 kb on - strand, within MPMX20_02950at 3077.027 kb on + strand, within MPMX20_02950at 3077.035 kb on - strand, within MPMX20_02950at 3077.035 kb on - strand, within MPMX20_02950at 3077.048 kb on - strand, within MPMX20_02950at 3077.050 kb on - strand, within MPMX20_02950at 3077.060 kb on + strand, within MPMX20_02950at 3077.068 kb on - strand, within MPMX20_02950at 3077.107 kb on - strandat 3077.117 kb on - strandat 3077.117 kb on - strandat 3077.221 kb on + strandat 3077.224 kb on - strandat 3077.228 kb on + strandat 3077.233 kb on + strandat 3077.265 kb on - strandat 3077.339 kb on + strandat 3077.426 kb on + strandat 3077.439 kb on + strandat 3077.439 kb on - strandat 3077.447 kb on - strandat 3077.447 kb on - strandat 3077.456 kb on + strandat 3077.503 kb on + strandat 3077.514 kb on + strand, within MPMX20_02951at 3077.514 kb on + strand, within MPMX20_02951at 3077.514 kb on + strand, within MPMX20_02951at 3077.514 kb on + strand, within MPMX20_02951at 3077.533 kb on + strand, within MPMX20_02951at 3077.533 kb on + strand, within MPMX20_02951at 3077.535 kb on + strand, within MPMX20_02951at 3077.535 kb on - strand, within MPMX20_02951at 3077.562 kb on - strand, within MPMX20_02951at 3077.637 kb on + strand, within MPMX20_02951at 3077.645 kb on - strand, within MPMX20_02951at 3077.672 kb on - strand, within MPMX20_02951at 3077.690 kb on - strand, within MPMX20_02951at 3077.690 kb on - strand, within MPMX20_02951at 3077.770 kb on + strand, within MPMX20_02951at 3077.916 kb on + strand, within MPMX20_02951at 3077.980 kb on + strand, within MPMX20_02951at 3078.011 kb on + strand, within MPMX20_02951at 3078.031 kb on + strand, within MPMX20_02951at 3078.031 kb on + strand, within MPMX20_02951at 3078.046 kb on + strand, within MPMX20_02951at 3078.046 kb on + strand, within MPMX20_02951at 3078.054 kb on - strand, within MPMX20_02951at 3078.054 kb on - strand, within MPMX20_02951at 3078.081 kb on + strand, within MPMX20_02951at 3078.081 kb on + strand, within MPMX20_02951at 3078.081 kb on + strand, within MPMX20_02951at 3078.081 kb on + strand, within MPMX20_02951at 3078.089 kb on - strand, within MPMX20_02951at 3078.089 kb on - strand, within MPMX20_02951at 3078.091 kb on + strand, within MPMX20_02951at 3078.110 kb on + strand, within MPMX20_02951at 3078.118 kb on - strand, within MPMX20_02951at 3078.164 kb on + strandat 3078.167 kb on + strandat 3078.189 kb on + strandat 3078.190 kb on - strandat 3078.278 kb on - strandat 3078.302 kb on - strandat 3078.302 kb on - strandat 3078.338 kb on + strandat 3078.369 kb on + strandat 3078.377 kb on - strandat 3078.401 kb on + strand, within MPMX20_02952at 3078.409 kb on - strand, within MPMX20_02952at 3078.680 kb on - strand, within MPMX20_02952at 3078.717 kb on + strand, within MPMX20_02952at 3078.717 kb on + strand, within MPMX20_02952at 3078.720 kb on - strand, within MPMX20_02952at 3078.740 kb on + strand, within MPMX20_02952at 3078.748 kb on - strand, within MPMX20_02952at 3078.750 kb on + strand, within MPMX20_02952at 3078.816 kb on + strand, within MPMX20_02952at 3078.816 kb on + strand, within MPMX20_02952at 3078.824 kb on - strand, within MPMX20_02952at 3078.824 kb on - strand, within MPMX20_02952at 3078.824 kb on - strand, within MPMX20_02952at 3078.824 kb on - strand, within MPMX20_02952at 3078.829 kb on - strand, within MPMX20_02952at 3078.832 kb on + strand, within MPMX20_02952at 3078.867 kb on + strand, within MPMX20_02952at 3078.869 kb on + strand, within MPMX20_02952at 3078.877 kb on + strand, within MPMX20_02952at 3078.877 kb on + strand, within MPMX20_02952at 3078.877 kb on + strand, within MPMX20_02952at 3078.877 kb on + strand, within MPMX20_02952at 3078.877 kb on + strand, within MPMX20_02952at 3078.885 kb on - strand, within MPMX20_02952at 3078.885 kb on - strand, within MPMX20_02952at 3078.885 kb on - strand, within MPMX20_02952at 3078.885 kb on - strand, within MPMX20_02952at 3078.960 kb on - strand, within MPMX20_02952at 3079.006 kb on + strand, within MPMX20_02952at 3079.026 kb on + strand, within MPMX20_02952at 3079.044 kb on - strand, within MPMX20_02952at 3079.044 kb on - strand, within MPMX20_02952at 3079.050 kb on + strand, within MPMX20_02952at 3079.082 kb on + strand, within MPMX20_02952at 3079.097 kb on + strand, within MPMX20_02952at 3079.140 kb on + strand, within MPMX20_02952at 3079.161 kb on - strand, within MPMX20_02952at 3079.161 kb on - strand, within MPMX20_02952at 3079.187 kb on - strand, within MPMX20_02952at 3079.218 kb on - strand, within MPMX20_02952at 3079.218 kb on - strand, within MPMX20_02952at 3079.220 kb on + strand, within MPMX20_02952at 3079.221 kb on + strand, within MPMX20_02952at 3079.228 kb on - strand, within MPMX20_02952at 3079.228 kb on - strand, within MPMX20_02952

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.01
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3,076,432 - -1.8
3,076,433 - -0.7
3,076,433 - -0.7
3,076,433 - -2.7
3,076,433 - +0.2
3,076,433 - +0.1
3,076,433 - +0.2
3,076,433 - -1.2
3,076,433 - +1.2
3,076,433 - -0.4
3,076,433 - +0.6
3,076,433 - -1.2
3,076,433 - -1.1
3,076,433 - -0.4
3,076,433 - +0.6
3,076,433 - -0.9
3,076,433 - +0.9
3,076,433 - +0.3
3,076,433 - -1.5
3,076,433 - +0.7
3,076,433 - -2.0
3,076,437 + +0.2
3,076,445 - +0.1
3,076,445 - -1.7
3,076,445 - +0.6
3,076,445 - -0.1
3,076,445 - +0.7
3,076,445 - -0.4
3,076,445 - -1.5
3,076,445 - -3.0
3,076,445 - +1.1
3,076,445 - -0.6
3,076,445 - +0.1
3,076,465 - -0.7
3,076,503 + +0.4
3,076,504 + -0.6
3,076,511 + -0.2
3,076,511 + -1.2
3,076,512 - -1.7
3,076,512 - -1.5
3,076,512 - +1.4
3,076,512 - -0.6
3,076,512 - -0.9
3,076,512 - +0.7
3,076,519 - +0.0
3,076,519 - -2.0
3,076,524 - -0.7
3,076,529 - +0.6
3,076,538 + -0.4
3,076,538 + +1.3
3,076,538 + +0.5
3,076,543 + +1.0
3,076,543 + -0.5
3,076,546 - -0.6
3,076,546 - +0.4
3,076,546 - +0.8
3,076,548 + +0.5
3,076,556 - -0.4
3,076,556 - -0.4
3,076,556 - -1.9
3,076,556 - -0.0
3,076,556 - -0.8
3,076,556 - -0.2
3,076,556 - -0.9
3,076,556 - +0.2
3,076,582 - -0.4
3,076,590 - -1.3
3,076,590 - +0.3
3,076,590 - +0.8
3,076,603 + MPMX20_02949 0.11 -1.3
3,076,617 + MPMX20_02949 0.19 -2.5
3,076,654 + MPMX20_02949 0.38 +0.1
3,076,654 + MPMX20_02949 0.38 +0.2
3,076,654 + MPMX20_02949 0.38 -0.6
3,076,661 + MPMX20_02949 0.42 -0.7
3,076,662 - MPMX20_02949 0.42 -1.7
3,076,675 + MPMX20_02949 0.49 +0.7
3,076,708 + MPMX20_02949 0.67 -1.0
3,076,708 + MPMX20_02949 0.67 +0.0
3,076,752 + +0.5
3,076,765 - +0.8
3,076,772 - -0.7
3,076,796 + -0.0
3,076,804 - -0.8
3,076,804 - -1.1
3,076,804 - -0.6
3,076,804 - +0.3
3,076,857 + +0.4
3,076,857 + -1.5
3,076,857 + -0.5
3,076,857 + +0.3
3,076,857 + -0.5
3,076,865 - +0.5
3,076,865 - -0.7
3,076,865 - -1.4
3,076,865 - +1.5
3,076,865 - -0.1
3,076,865 - +1.0
3,076,865 - -1.6
3,076,915 + MPMX20_02950 0.12 -0.4
3,076,915 + MPMX20_02950 0.12 -2.3
3,076,950 - MPMX20_02950 0.27 -1.2
3,076,955 + MPMX20_02950 0.29 -1.2
3,076,981 - MPMX20_02950 0.40 -0.3
3,077,027 + MPMX20_02950 0.58 -3.1
3,077,035 - MPMX20_02950 0.62 -0.9
3,077,035 - MPMX20_02950 0.62 +0.3
3,077,048 - MPMX20_02950 0.67 -1.3
3,077,050 - MPMX20_02950 0.68 +2.3
3,077,060 + MPMX20_02950 0.72 -3.7
3,077,068 - MPMX20_02950 0.75 -0.4
3,077,107 - -1.5
3,077,117 - +1.3
3,077,117 - -0.6
3,077,221 + +1.2
3,077,224 - +0.4
3,077,228 + +1.1
3,077,233 + -0.2
3,077,265 - +0.5
3,077,339 + +1.1
3,077,426 + -1.6
3,077,439 + +0.2
3,077,439 - -0.7
3,077,447 - -1.2
3,077,447 - -0.2
3,077,456 + +1.1
3,077,503 + -0.3
3,077,514 + MPMX20_02951 0.10 +0.3
3,077,514 + MPMX20_02951 0.10 +2.0
3,077,514 + MPMX20_02951 0.10 +0.4
3,077,514 + MPMX20_02951 0.10 -0.8
3,077,533 + MPMX20_02951 0.13 -1.1
3,077,533 + MPMX20_02951 0.13 +0.7
3,077,535 + MPMX20_02951 0.13 +0.1
3,077,535 - MPMX20_02951 0.13 +0.1
3,077,562 - MPMX20_02951 0.16 +1.3
3,077,637 + MPMX20_02951 0.26 -0.5
3,077,645 - MPMX20_02951 0.27 +0.3
3,077,672 - MPMX20_02951 0.30 -1.7
3,077,690 - MPMX20_02951 0.32 -1.9
3,077,690 - MPMX20_02951 0.32 -0.4
3,077,770 + MPMX20_02951 0.42 -0.1
3,077,916 + MPMX20_02951 0.61 -1.5
3,077,980 + MPMX20_02951 0.69 -0.6
3,078,011 + MPMX20_02951 0.73 -1.5
3,078,031 + MPMX20_02951 0.75 -0.5
3,078,031 + MPMX20_02951 0.75 +0.2
3,078,046 + MPMX20_02951 0.77 -0.0
3,078,046 + MPMX20_02951 0.77 +0.2
3,078,054 - MPMX20_02951 0.78 +1.1
3,078,054 - MPMX20_02951 0.78 +0.1
3,078,081 + MPMX20_02951 0.81 -0.3
3,078,081 + MPMX20_02951 0.81 -1.7
3,078,081 + MPMX20_02951 0.81 -2.3
3,078,081 + MPMX20_02951 0.81 +0.4
3,078,089 - MPMX20_02951 0.82 +0.1
3,078,089 - MPMX20_02951 0.82 +0.3
3,078,091 + MPMX20_02951 0.83 -1.0
3,078,110 + MPMX20_02951 0.85 -1.2
3,078,118 - MPMX20_02951 0.86 -0.7
3,078,164 + -2.9
3,078,167 + -0.1
3,078,189 + +0.4
3,078,190 - -1.4
3,078,278 - -1.3
3,078,302 - -0.2
3,078,302 - -0.0
3,078,338 + -0.7
3,078,369 + -0.7
3,078,377 - -0.3
3,078,401 + MPMX20_02952 0.10 -1.4
3,078,409 - MPMX20_02952 0.11 -0.4
3,078,680 - MPMX20_02952 0.26 -1.3
3,078,717 + MPMX20_02952 0.28 -1.8
3,078,717 + MPMX20_02952 0.28 +0.3
3,078,720 - MPMX20_02952 0.28 -1.7
3,078,740 + MPMX20_02952 0.29 -1.2
3,078,748 - MPMX20_02952 0.29 -1.6
3,078,750 + MPMX20_02952 0.29 -1.9
3,078,816 + MPMX20_02952 0.33 -0.4
3,078,816 + MPMX20_02952 0.33 +0.1
3,078,824 - MPMX20_02952 0.33 +0.2
3,078,824 - MPMX20_02952 0.33 +0.1
3,078,824 - MPMX20_02952 0.33 -0.5
3,078,824 - MPMX20_02952 0.33 +0.0
3,078,829 - MPMX20_02952 0.34 +0.3
3,078,832 + MPMX20_02952 0.34 -0.6
3,078,867 + MPMX20_02952 0.36 -1.7
3,078,869 + MPMX20_02952 0.36 +0.4
3,078,877 + MPMX20_02952 0.36 -1.0
3,078,877 + MPMX20_02952 0.36 +0.8
3,078,877 + MPMX20_02952 0.36 -1.4
3,078,877 + MPMX20_02952 0.36 -1.6
3,078,877 + MPMX20_02952 0.36 -0.2
3,078,885 - MPMX20_02952 0.37 -1.0
3,078,885 - MPMX20_02952 0.37 -0.6
3,078,885 - MPMX20_02952 0.37 -0.5
3,078,885 - MPMX20_02952 0.37 -2.3
3,078,960 - MPMX20_02952 0.41 -0.4
3,079,006 + MPMX20_02952 0.43 -1.1
3,079,026 + MPMX20_02952 0.45 -0.4
3,079,044 - MPMX20_02952 0.46 -0.8
3,079,044 - MPMX20_02952 0.46 +1.0
3,079,050 + MPMX20_02952 0.46 -1.9
3,079,082 + MPMX20_02952 0.48 +1.1
3,079,097 + MPMX20_02952 0.48 -0.4
3,079,140 + MPMX20_02952 0.51 -0.2
3,079,161 - MPMX20_02952 0.52 +2.0
3,079,161 - MPMX20_02952 0.52 +2.1
3,079,187 - MPMX20_02952 0.53 +0.3
3,079,218 - MPMX20_02952 0.55 -0.0
3,079,218 - MPMX20_02952 0.55 -0.7
3,079,220 + MPMX20_02952 0.55 -3.1
3,079,221 + MPMX20_02952 0.55 +1.3
3,079,228 - MPMX20_02952 0.56 +0.5
3,079,228 - MPMX20_02952 0.56 -0.1

Or see this region's nucleotide sequence