Experiment: AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02798 and MPMX20_02799 are separated by 4 nucleotides MPMX20_02799 and MPMX20_02800 overlap by 4 nucleotides MPMX20_02800 and MPMX20_02801 are separated by 123 nucleotides MPMX20_02801 and MPMX20_02802 are separated by 2 nucleotides
MPMX20_02798: MPMX20_02798 - Chemotaxis protein CheA, at 2,955,276 to 2,957,309
_02798
MPMX20_02799: MPMX20_02799 - Motility protein B, at 2,957,314 to 2,958,243
_02799
MPMX20_02800: MPMX20_02800 - Motility protein A, at 2,958,240 to 2,959,127
_02800
MPMX20_02801: MPMX20_02801 - Flagellar transcriptional regulator FlhC, at 2,959,251 to 2,959,829
_02801
MPMX20_02802: MPMX20_02802 - Flagellar transcriptional regulator FlhD, at 2,959,832 to 2,960,182
_02802
Position (kb)
2958
2959
2960 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2957.240 kb on - strand at 2957.240 kb on - strand at 2957.253 kb on + strand at 2957.363 kb on + strand at 2957.373 kb on + strand at 2957.381 kb on - strand at 2957.451 kb on + strand, within MPMX20_02799 at 2957.535 kb on + strand, within MPMX20_02799 at 2957.555 kb on - strand, within MPMX20_02799 at 2957.558 kb on + strand, within MPMX20_02799 at 2957.566 kb on - strand, within MPMX20_02799 at 2957.619 kb on + strand, within MPMX20_02799 at 2957.623 kb on + strand, within MPMX20_02799 at 2957.623 kb on - strand, within MPMX20_02799 at 2957.631 kb on - strand, within MPMX20_02799 at 2957.677 kb on + strand, within MPMX20_02799 at 2957.677 kb on - strand, within MPMX20_02799 at 2957.687 kb on - strand, within MPMX20_02799 at 2957.700 kb on + strand, within MPMX20_02799 at 2957.708 kb on - strand, within MPMX20_02799 at 2957.708 kb on - strand, within MPMX20_02799 at 2957.804 kb on + strand, within MPMX20_02799 at 2957.889 kb on + strand, within MPMX20_02799 at 2957.945 kb on + strand, within MPMX20_02799 at 2957.959 kb on + strand, within MPMX20_02799 at 2958.033 kb on + strand, within MPMX20_02799 at 2958.106 kb on - strand, within MPMX20_02799 at 2958.188 kb on + strand at 2958.363 kb on - strand, within MPMX20_02800 at 2958.373 kb on + strand, within MPMX20_02800 at 2958.378 kb on + strand, within MPMX20_02800 at 2958.384 kb on - strand, within MPMX20_02800 at 2958.384 kb on - strand, within MPMX20_02800 at 2958.398 kb on - strand, within MPMX20_02800 at 2958.451 kb on + strand, within MPMX20_02800 at 2958.451 kb on + strand, within MPMX20_02800 at 2958.517 kb on + strand, within MPMX20_02800 at 2958.600 kb on + strand, within MPMX20_02800 at 2958.628 kb on + strand, within MPMX20_02800 at 2958.629 kb on + strand, within MPMX20_02800 at 2958.629 kb on + strand, within MPMX20_02800 at 2958.639 kb on - strand, within MPMX20_02800 at 2958.709 kb on + strand, within MPMX20_02800 at 2958.709 kb on + strand, within MPMX20_02800 at 2958.740 kb on + strand, within MPMX20_02800 at 2958.773 kb on - strand, within MPMX20_02800 at 2958.783 kb on - strand, within MPMX20_02800 at 2958.877 kb on + strand, within MPMX20_02800 at 2958.877 kb on + strand, within MPMX20_02800 at 2958.885 kb on - strand, within MPMX20_02800 at 2958.887 kb on + strand, within MPMX20_02800 at 2958.920 kb on + strand, within MPMX20_02800 at 2958.920 kb on + strand, within MPMX20_02800 at 2958.941 kb on - strand, within MPMX20_02800 at 2958.949 kb on - strand, within MPMX20_02800 at 2958.952 kb on - strand, within MPMX20_02800 at 2958.997 kb on + strand, within MPMX20_02800 at 2958.997 kb on + strand, within MPMX20_02800 at 2959.004 kb on + strand, within MPMX20_02800 at 2959.005 kb on - strand, within MPMX20_02800 at 2959.007 kb on - strand, within MPMX20_02800 at 2959.044 kb on - strand at 2959.048 kb on + strand at 2959.048 kb on + strand at 2959.048 kb on + strand at 2959.048 kb on + strand at 2959.056 kb on - strand at 2959.056 kb on - strand at 2959.056 kb on - strand at 2959.056 kb on - strand at 2959.056 kb on - strand at 2959.056 kb on - strand at 2959.056 kb on - strand at 2959.056 kb on - strand at 2959.080 kb on + strand at 2959.090 kb on + strand at 2959.098 kb on - strand at 2959.119 kb on - strand at 2959.169 kb on - strand at 2959.171 kb on - strand at 2959.225 kb on + strand at 2959.243 kb on + strand at 2959.283 kb on - strand at 2959.293 kb on + strand at 2959.316 kb on + strand, within MPMX20_02801 at 2959.338 kb on + strand, within MPMX20_02801 at 2959.338 kb on + strand, within MPMX20_02801 at 2959.341 kb on - strand, within MPMX20_02801 at 2959.346 kb on - strand, within MPMX20_02801 at 2959.346 kb on - strand, within MPMX20_02801 at 2959.346 kb on - strand, within MPMX20_02801 at 2959.349 kb on + strand, within MPMX20_02801 at 2959.350 kb on + strand, within MPMX20_02801 at 2959.357 kb on - strand, within MPMX20_02801 at 2959.424 kb on - strand, within MPMX20_02801 at 2959.430 kb on + strand, within MPMX20_02801 at 2959.484 kb on - strand, within MPMX20_02801 at 2959.492 kb on + strand, within MPMX20_02801 at 2959.686 kb on + strand, within MPMX20_02801 at 2959.715 kb on + strand, within MPMX20_02801 at 2959.722 kb on + strand, within MPMX20_02801 at 2959.722 kb on + strand, within MPMX20_02801 at 2959.728 kb on - strand, within MPMX20_02801 at 2959.852 kb on - strand at 2959.905 kb on - strand, within MPMX20_02802 at 2959.905 kb on - strand, within MPMX20_02802 at 2959.908 kb on + strand, within MPMX20_02802 at 2959.918 kb on + strand, within MPMX20_02802 at 2959.926 kb on - strand, within MPMX20_02802 at 2959.935 kb on + strand, within MPMX20_02802 at 2959.943 kb on - strand, within MPMX20_02802 at 2959.954 kb on + strand, within MPMX20_02802 at 2959.956 kb on + strand, within MPMX20_02802 at 2959.961 kb on + strand, within MPMX20_02802 at 2959.961 kb on + strand, within MPMX20_02802 at 2959.962 kb on + strand, within MPMX20_02802 at 2959.969 kb on - strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.032 kb on + strand, within MPMX20_02802 at 2960.033 kb on + strand, within MPMX20_02802 at 2960.033 kb on + strand, within MPMX20_02802 at 2960.033 kb on + strand, within MPMX20_02802 at 2960.040 kb on - strand, within MPMX20_02802 at 2960.040 kb on - strand, within MPMX20_02802 at 2960.040 kb on - strand, within MPMX20_02802 at 2960.040 kb on - strand, within MPMX20_02802 at 2960.040 kb on - strand, within MPMX20_02802 at 2960.040 kb on - strand, within MPMX20_02802 at 2960.040 kb on - strand, within MPMX20_02802 at 2960.040 kb on - strand, within MPMX20_02802 at 2960.040 kb on - strand, within MPMX20_02802 at 2960.040 kb on - strand, within MPMX20_02802 at 2960.040 kb on - strand, within MPMX20_02802 at 2960.040 kb on - strand, within MPMX20_02802 at 2960.040 kb on - strand, within MPMX20_02802 at 2960.040 kb on - strand, within MPMX20_02802 at 2960.041 kb on - strand, within MPMX20_02802 at 2960.041 kb on - strand, within MPMX20_02802 at 2960.045 kb on - strand, within MPMX20_02802 at 2960.050 kb on - strand, within MPMX20_02802 at 2960.068 kb on - strand, within MPMX20_02802 at 2960.072 kb on + strand, within MPMX20_02802 at 2960.094 kb on + strand, within MPMX20_02802 at 2960.094 kb on + strand, within MPMX20_02802 at 2960.094 kb on + strand, within MPMX20_02802 at 2960.094 kb on + strand, within MPMX20_02802 at 2960.094 kb on + strand, within MPMX20_02802 at 2960.094 kb on + strand, within MPMX20_02802 at 2960.099 kb on + strand, within MPMX20_02802 at 2960.099 kb on + strand, within MPMX20_02802 at 2960.099 kb on + strand, within MPMX20_02802 at 2960.099 kb on + strand, within MPMX20_02802 at 2960.099 kb on + strand, within MPMX20_02802 at 2960.099 kb on + strand, within MPMX20_02802 at 2960.099 kb on + strand, within MPMX20_02802 at 2960.102 kb on - strand, within MPMX20_02802 at 2960.102 kb on - strand, within MPMX20_02802 at 2960.102 kb on - strand, within MPMX20_02802 at 2960.102 kb on - strand, within MPMX20_02802 at 2960.107 kb on - strand, within MPMX20_02802 at 2960.107 kb on - strand, within MPMX20_02802 at 2960.107 kb on - strand, within MPMX20_02802 at 2960.107 kb on - strand, within MPMX20_02802 at 2960.107 kb on - strand, within MPMX20_02802 at 2960.108 kb on + strand, within MPMX20_02802 at 2960.109 kb on + strand, within MPMX20_02802 at 2960.109 kb on + strand, within MPMX20_02802 at 2960.109 kb on + strand, within MPMX20_02802 at 2960.109 kb on + strand, within MPMX20_02802 at 2960.109 kb on + strand, within MPMX20_02802 at 2960.113 kb on + strand, within MPMX20_02802 at 2960.117 kb on - strand, within MPMX20_02802 at 2960.117 kb on - strand, within MPMX20_02802 at 2960.117 kb on - strand, within MPMX20_02802 at 2960.117 kb on - strand, within MPMX20_02802 at 2960.117 kb on - strand, within MPMX20_02802 at 2960.126 kb on + strand, within MPMX20_02802
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.01 remove 2,957,240 - -0.7 2,957,240 - -2.2 2,957,253 + -1.1 2,957,363 + -1.7 2,957,373 + -0.5 2,957,381 - -2.2 2,957,451 + MPMX20_02799 0.15 -2.2 2,957,535 + MPMX20_02799 0.24 -1.9 2,957,555 - MPMX20_02799 0.26 -1.4 2,957,558 + MPMX20_02799 0.26 -1.6 2,957,566 - MPMX20_02799 0.27 +0.7 2,957,619 + MPMX20_02799 0.33 -0.1 2,957,623 + MPMX20_02799 0.33 -1.4 2,957,623 - MPMX20_02799 0.33 -1.8 2,957,631 - MPMX20_02799 0.34 -0.1 2,957,677 + MPMX20_02799 0.39 -1.2 2,957,677 - MPMX20_02799 0.39 +1.3 2,957,687 - MPMX20_02799 0.40 -1.0 2,957,700 + MPMX20_02799 0.42 -1.0 2,957,708 - MPMX20_02799 0.42 -2.4 2,957,708 - MPMX20_02799 0.42 -3.2 2,957,804 + MPMX20_02799 0.53 -3.7 2,957,889 + MPMX20_02799 0.62 +0.1 2,957,945 + MPMX20_02799 0.68 -3.7 2,957,959 + MPMX20_02799 0.69 -0.3 2,958,033 + MPMX20_02799 0.77 -0.6 2,958,106 - MPMX20_02799 0.85 -1.0 2,958,188 + +0.2 2,958,363 - MPMX20_02800 0.14 -1.7 2,958,373 + MPMX20_02800 0.15 -1.8 2,958,378 + MPMX20_02800 0.16 -1.1 2,958,384 - MPMX20_02800 0.16 -1.7 2,958,384 - MPMX20_02800 0.16 -2.5 2,958,398 - MPMX20_02800 0.18 -2.8 2,958,451 + MPMX20_02800 0.24 -1.4 2,958,451 + MPMX20_02800 0.24 -1.8 2,958,517 + MPMX20_02800 0.31 -1.0 2,958,600 + MPMX20_02800 0.41 -1.4 2,958,628 + MPMX20_02800 0.44 -0.6 2,958,629 + MPMX20_02800 0.44 -1.7 2,958,629 + MPMX20_02800 0.44 -0.6 2,958,639 - MPMX20_02800 0.45 +1.3 2,958,709 + MPMX20_02800 0.53 -0.8 2,958,709 + MPMX20_02800 0.53 -0.5 2,958,740 + MPMX20_02800 0.56 +0.7 2,958,773 - MPMX20_02800 0.60 -2.1 2,958,783 - MPMX20_02800 0.61 -1.0 2,958,877 + MPMX20_02800 0.72 -1.3 2,958,877 + MPMX20_02800 0.72 -1.3 2,958,885 - MPMX20_02800 0.73 -1.4 2,958,887 + MPMX20_02800 0.73 -0.1 2,958,920 + MPMX20_02800 0.77 -1.9 2,958,920 + MPMX20_02800 0.77 -0.1 2,958,941 - MPMX20_02800 0.79 -2.0 2,958,949 - MPMX20_02800 0.80 -0.2 2,958,952 - MPMX20_02800 0.80 -2.0 2,958,997 + MPMX20_02800 0.85 -1.0 2,958,997 + MPMX20_02800 0.85 -0.3 2,959,004 + MPMX20_02800 0.86 -3.3 2,959,005 - MPMX20_02800 0.86 -3.6 2,959,007 - MPMX20_02800 0.86 -0.6 2,959,044 - -0.8 2,959,048 + +0.1 2,959,048 + -2.0 2,959,048 + -2.3 2,959,048 + +1.5 2,959,056 - -1.9 2,959,056 - -2.1 2,959,056 - -2.3 2,959,056 - -0.7 2,959,056 - +0.7 2,959,056 - -0.2 2,959,056 - -3.0 2,959,056 - -3.5 2,959,080 + -1.1 2,959,090 + -3.4 2,959,098 - -2.0 2,959,119 - -0.2 2,959,169 - -0.0 2,959,171 - -1.4 2,959,225 + +0.0 2,959,243 + -1.0 2,959,283 - -2.0 2,959,293 + -0.2 2,959,316 + MPMX20_02801 0.11 -2.0 2,959,338 + MPMX20_02801 0.15 -1.7 2,959,338 + MPMX20_02801 0.15 -1.5 2,959,341 - MPMX20_02801 0.16 -3.4 2,959,346 - MPMX20_02801 0.16 -0.9 2,959,346 - MPMX20_02801 0.16 -0.3 2,959,346 - MPMX20_02801 0.16 -1.5 2,959,349 + MPMX20_02801 0.17 -2.3 2,959,350 + MPMX20_02801 0.17 -2.0 2,959,357 - MPMX20_02801 0.18 -0.6 2,959,424 - MPMX20_02801 0.30 -1.7 2,959,430 + MPMX20_02801 0.31 +0.4 2,959,484 - MPMX20_02801 0.40 -0.6 2,959,492 + MPMX20_02801 0.42 -0.6 2,959,686 + MPMX20_02801 0.75 -1.9 2,959,715 + MPMX20_02801 0.80 -0.7 2,959,722 + MPMX20_02801 0.81 -2.2 2,959,722 + MPMX20_02801 0.81 +1.5 2,959,728 - MPMX20_02801 0.82 -1.6 2,959,852 - -1.0 2,959,905 - MPMX20_02802 0.21 -1.4 2,959,905 - MPMX20_02802 0.21 +0.6 2,959,908 + MPMX20_02802 0.22 -0.5 2,959,918 + MPMX20_02802 0.25 -0.8 2,959,926 - MPMX20_02802 0.27 -1.1 2,959,935 + MPMX20_02802 0.29 +0.3 2,959,943 - MPMX20_02802 0.32 -0.2 2,959,954 + MPMX20_02802 0.35 -2.9 2,959,956 + MPMX20_02802 0.35 -0.9 2,959,961 + MPMX20_02802 0.37 +0.7 2,959,961 + MPMX20_02802 0.37 -0.9 2,959,962 + MPMX20_02802 0.37 -1.2 2,959,969 - MPMX20_02802 0.39 -0.2 2,960,032 + MPMX20_02802 0.57 +0.2 2,960,032 + MPMX20_02802 0.57 -1.7 2,960,032 + MPMX20_02802 0.57 -1.3 2,960,032 + MPMX20_02802 0.57 -1.6 2,960,032 + MPMX20_02802 0.57 -1.0 2,960,032 + MPMX20_02802 0.57 -2.2 2,960,032 + MPMX20_02802 0.57 -3.2 2,960,032 + MPMX20_02802 0.57 -1.5 2,960,032 + MPMX20_02802 0.57 -4.5 2,960,032 + MPMX20_02802 0.57 -0.6 2,960,032 + MPMX20_02802 0.57 +1.0 2,960,032 + MPMX20_02802 0.57 -1.3 2,960,032 + MPMX20_02802 0.57 -1.2 2,960,032 + MPMX20_02802 0.57 -2.6 2,960,032 + MPMX20_02802 0.57 -2.0 2,960,032 + MPMX20_02802 0.57 -1.4 2,960,032 + MPMX20_02802 0.57 +0.5 2,960,032 + MPMX20_02802 0.57 +0.4 2,960,032 + MPMX20_02802 0.57 -2.0 2,960,032 + MPMX20_02802 0.57 -0.8 2,960,032 + MPMX20_02802 0.57 +2.0 2,960,032 + MPMX20_02802 0.57 -1.1 2,960,032 + MPMX20_02802 0.57 -1.2 2,960,032 + MPMX20_02802 0.57 -2.7 2,960,032 + MPMX20_02802 0.57 -1.3 2,960,033 + MPMX20_02802 0.57 -3.5 2,960,033 + MPMX20_02802 0.57 +0.2 2,960,033 + MPMX20_02802 0.57 -0.2 2,960,040 - MPMX20_02802 0.59 -3.0 2,960,040 - MPMX20_02802 0.59 -1.5 2,960,040 - MPMX20_02802 0.59 +0.4 2,960,040 - MPMX20_02802 0.59 -1.0 2,960,040 - MPMX20_02802 0.59 -0.3 2,960,040 - MPMX20_02802 0.59 -0.5 2,960,040 - MPMX20_02802 0.59 -3.0 2,960,040 - MPMX20_02802 0.59 +2.3 2,960,040 - MPMX20_02802 0.59 -0.9 2,960,040 - MPMX20_02802 0.59 +0.3 2,960,040 - MPMX20_02802 0.59 -0.2 2,960,040 - MPMX20_02802 0.59 -1.7 2,960,040 - MPMX20_02802 0.59 -1.6 2,960,040 - MPMX20_02802 0.59 -0.5 2,960,041 - MPMX20_02802 0.60 -0.8 2,960,041 - MPMX20_02802 0.60 -0.0 2,960,045 - MPMX20_02802 0.61 -1.2 2,960,050 - MPMX20_02802 0.62 +0.1 2,960,068 - MPMX20_02802 0.67 -0.7 2,960,072 + MPMX20_02802 0.68 -0.1 2,960,094 + MPMX20_02802 0.75 -1.2 2,960,094 + MPMX20_02802 0.75 -1.9 2,960,094 + MPMX20_02802 0.75 -1.2 2,960,094 + MPMX20_02802 0.75 -2.3 2,960,094 + MPMX20_02802 0.75 -0.1 2,960,094 + MPMX20_02802 0.75 -0.4 2,960,099 + MPMX20_02802 0.76 -1.1 2,960,099 + MPMX20_02802 0.76 -1.3 2,960,099 + MPMX20_02802 0.76 -2.3 2,960,099 + MPMX20_02802 0.76 +0.4 2,960,099 + MPMX20_02802 0.76 +0.1 2,960,099 + MPMX20_02802 0.76 -2.2 2,960,099 + MPMX20_02802 0.76 -2.3 2,960,102 - MPMX20_02802 0.77 -0.9 2,960,102 - MPMX20_02802 0.77 -0.6 2,960,102 - MPMX20_02802 0.77 -2.3 2,960,102 - MPMX20_02802 0.77 -0.5 2,960,107 - MPMX20_02802 0.78 -0.6 2,960,107 - MPMX20_02802 0.78 -2.2 2,960,107 - MPMX20_02802 0.78 -0.4 2,960,107 - MPMX20_02802 0.78 -0.3 2,960,107 - MPMX20_02802 0.78 -0.5 2,960,108 + MPMX20_02802 0.79 -1.1 2,960,109 + MPMX20_02802 0.79 -0.9 2,960,109 + MPMX20_02802 0.79 +0.2 2,960,109 + MPMX20_02802 0.79 -0.3 2,960,109 + MPMX20_02802 0.79 -0.8 2,960,109 + MPMX20_02802 0.79 -1.4 2,960,113 + MPMX20_02802 0.80 +0.2 2,960,117 - MPMX20_02802 0.81 -1.5 2,960,117 - MPMX20_02802 0.81 +0.1 2,960,117 - MPMX20_02802 0.81 -3.8 2,960,117 - MPMX20_02802 0.81 -0.1 2,960,117 - MPMX20_02802 0.81 -0.2 2,960,126 + MPMX20_02802 0.84 -1.3
Or see this region's nucleotide sequence