Experiment: AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01379 and MPMX20_01380 are separated by 105 nucleotides MPMX20_01380 and MPMX20_01381 are separated by 304 nucleotides MPMX20_01381 and MPMX20_01382 are separated by 61 nucleotides
MPMX20_01379: MPMX20_01379 - Zinc transporter ZitB, at 1,441,286 to 1,442,224
_01379
MPMX20_01380: MPMX20_01380 - hypothetical protein, at 1,442,330 to 1,442,710
_01380
MPMX20_01381: MPMX20_01381 - Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive, at 1,443,015 to 1,444,067
_01381
MPMX20_01382: MPMX20_01382 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 1,444,129 to 1,444,881
_01382
Position (kb)
1443
1444
1445 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1442.076 kb on - strand, within MPMX20_01379 at 1442.102 kb on + strand, within MPMX20_01379 at 1442.142 kb on - strand at 1442.142 kb on - strand at 1442.164 kb on + strand at 1442.328 kb on + strand at 1442.485 kb on - strand, within MPMX20_01380 at 1442.502 kb on + strand, within MPMX20_01380 at 1442.517 kb on + strand, within MPMX20_01380 at 1442.525 kb on - strand, within MPMX20_01380 at 1442.748 kb on - strand at 1442.809 kb on - strand at 1443.152 kb on + strand, within MPMX20_01381 at 1443.160 kb on - strand, within MPMX20_01381 at 1443.386 kb on - strand, within MPMX20_01381 at 1443.554 kb on - strand, within MPMX20_01381 at 1443.589 kb on + strand, within MPMX20_01381 at 1443.589 kb on + strand, within MPMX20_01381 at 1443.645 kb on - strand, within MPMX20_01381 at 1443.737 kb on - strand, within MPMX20_01381 at 1443.756 kb on + strand, within MPMX20_01381 at 1443.756 kb on + strand, within MPMX20_01381 at 1443.937 kb on - strand, within MPMX20_01381 at 1443.968 kb on + strand at 1444.000 kb on - strand at 1444.136 kb on + strand at 1444.184 kb on + strand at 1444.184 kb on + strand at 1444.192 kb on - strand at 1444.239 kb on - strand, within MPMX20_01382 at 1444.261 kb on - strand, within MPMX20_01382 at 1444.322 kb on + strand, within MPMX20_01382 at 1444.330 kb on - strand, within MPMX20_01382 at 1444.514 kb on - strand, within MPMX20_01382 at 1444.519 kb on - strand, within MPMX20_01382 at 1444.585 kb on + strand, within MPMX20_01382 at 1444.602 kb on - strand, within MPMX20_01382 at 1444.660 kb on - strand, within MPMX20_01382 at 1444.711 kb on + strand, within MPMX20_01382 at 1444.735 kb on + strand, within MPMX20_01382 at 1444.959 kb on + strand at 1444.959 kb on + strand at 1444.959 kb on + strand at 1444.959 kb on + strand at 1444.960 kb on + strand at 1444.962 kb on - strand at 1444.962 kb on - strand at 1444.962 kb on - strand at 1444.962 kb on - strand at 1444.962 kb on - strand at 1444.967 kb on - strand at 1444.967 kb on - strand at 1444.967 kb on - strand at 1444.967 kb on - strand at 1444.986 kb on + strand at 1445.004 kb on + strand at 1445.012 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.01 remove 1,442,076 - MPMX20_01379 0.84 -1.3 1,442,102 + MPMX20_01379 0.87 +0.4 1,442,142 - +2.1 1,442,142 - -0.7 1,442,164 + -1.5 1,442,328 + -2.3 1,442,485 - MPMX20_01380 0.41 +2.0 1,442,502 + MPMX20_01380 0.45 -0.7 1,442,517 + MPMX20_01380 0.49 +1.0 1,442,525 - MPMX20_01380 0.51 +0.7 1,442,748 - -0.6 1,442,809 - +0.1 1,443,152 + MPMX20_01381 0.13 -1.4 1,443,160 - MPMX20_01381 0.14 +2.1 1,443,386 - MPMX20_01381 0.35 +1.0 1,443,554 - MPMX20_01381 0.51 -0.1 1,443,589 + MPMX20_01381 0.55 +0.2 1,443,589 + MPMX20_01381 0.55 -2.0 1,443,645 - MPMX20_01381 0.60 -0.6 1,443,737 - MPMX20_01381 0.69 +1.4 1,443,756 + MPMX20_01381 0.70 -0.6 1,443,756 + MPMX20_01381 0.70 +2.0 1,443,937 - MPMX20_01381 0.88 -0.3 1,443,968 + -0.5 1,444,000 - -1.1 1,444,136 + -1.4 1,444,184 + +0.6 1,444,184 + -0.4 1,444,192 - -1.0 1,444,239 - MPMX20_01382 0.15 -1.2 1,444,261 - MPMX20_01382 0.18 -1.5 1,444,322 + MPMX20_01382 0.26 -2.3 1,444,330 - MPMX20_01382 0.27 +0.3 1,444,514 - MPMX20_01382 0.51 +0.3 1,444,519 - MPMX20_01382 0.52 +0.0 1,444,585 + MPMX20_01382 0.61 -1.2 1,444,602 - MPMX20_01382 0.63 -2.5 1,444,660 - MPMX20_01382 0.71 -1.0 1,444,711 + MPMX20_01382 0.77 -0.8 1,444,735 + MPMX20_01382 0.80 -1.1 1,444,959 + +0.0 1,444,959 + +0.6 1,444,959 + -0.2 1,444,959 + -1.5 1,444,960 + -0.3 1,444,962 - +2.1 1,444,962 - +0.2 1,444,962 - +1.3 1,444,962 - -0.1 1,444,962 - +0.2 1,444,967 - -0.6 1,444,967 - +0.1 1,444,967 - -0.9 1,444,967 - +0.5 1,444,986 + -0.5 1,445,004 + -1.6 1,445,012 - +0.7
Or see this region's nucleotide sequence