Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04123

Experiment: AMD2036 coinoculated with AMD2590 on RCH2 to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04122 and MPMX20_04123 are separated by 80 nucleotidesMPMX20_04123 and MPMX20_04124 are separated by 137 nucleotides MPMX20_04122: MPMX20_04122 - Aldehyde reductase Ahr, at 4,316,534 to 4,317,553 _04122 MPMX20_04123: MPMX20_04123 - Dihydroxyacetone kinase, at 4,317,634 to 4,319,280 _04123 MPMX20_04124: MPMX20_04124 - hypothetical protein, at 4,319,418 to 4,320,920 _04124 Position (kb) 4317 4318 4319 4320Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4316.666 kb on - strand, within MPMX20_04122at 4316.684 kb on + strand, within MPMX20_04122at 4316.749 kb on + strand, within MPMX20_04122at 4316.764 kb on + strand, within MPMX20_04122at 4316.764 kb on + strand, within MPMX20_04122at 4316.764 kb on + strand, within MPMX20_04122at 4316.772 kb on - strand, within MPMX20_04122at 4316.817 kb on + strand, within MPMX20_04122at 4316.817 kb on + strand, within MPMX20_04122at 4316.817 kb on + strand, within MPMX20_04122at 4316.817 kb on + strand, within MPMX20_04122at 4316.825 kb on - strand, within MPMX20_04122at 4316.825 kb on - strand, within MPMX20_04122at 4316.888 kb on - strand, within MPMX20_04122at 4316.934 kb on + strand, within MPMX20_04122at 4317.076 kb on - strand, within MPMX20_04122at 4317.366 kb on - strand, within MPMX20_04122at 4317.366 kb on - strand, within MPMX20_04122at 4317.393 kb on + strand, within MPMX20_04122at 4317.393 kb on + strand, within MPMX20_04122at 4317.393 kb on + strand, within MPMX20_04122at 4317.456 kb on + strandat 4317.464 kb on - strandat 4317.591 kb on + strandat 4317.603 kb on + strandat 4317.664 kb on - strandat 4317.694 kb on + strandat 4317.709 kb on - strandat 4317.709 kb on - strandat 4317.709 kb on - strandat 4317.801 kb on + strand, within MPMX20_04123at 4317.878 kb on - strand, within MPMX20_04123at 4317.881 kb on + strand, within MPMX20_04123at 4317.893 kb on + strand, within MPMX20_04123at 4317.928 kb on + strand, within MPMX20_04123at 4317.930 kb on + strand, within MPMX20_04123at 4318.073 kb on + strand, within MPMX20_04123at 4318.111 kb on + strand, within MPMX20_04123at 4318.111 kb on + strand, within MPMX20_04123at 4318.220 kb on - strand, within MPMX20_04123at 4318.220 kb on - strand, within MPMX20_04123at 4318.220 kb on - strand, within MPMX20_04123at 4318.246 kb on + strand, within MPMX20_04123at 4318.246 kb on + strand, within MPMX20_04123at 4318.254 kb on - strand, within MPMX20_04123at 4318.254 kb on - strand, within MPMX20_04123at 4318.296 kb on + strand, within MPMX20_04123at 4318.303 kb on - strand, within MPMX20_04123at 4318.399 kb on + strand, within MPMX20_04123at 4318.405 kb on - strand, within MPMX20_04123at 4318.443 kb on + strand, within MPMX20_04123at 4318.461 kb on - strand, within MPMX20_04123at 4318.461 kb on - strand, within MPMX20_04123at 4318.475 kb on + strand, within MPMX20_04123at 4318.496 kb on + strand, within MPMX20_04123at 4318.496 kb on + strand, within MPMX20_04123at 4318.646 kb on - strand, within MPMX20_04123at 4318.689 kb on + strand, within MPMX20_04123at 4318.689 kb on + strand, within MPMX20_04123at 4318.689 kb on + strand, within MPMX20_04123at 4318.697 kb on - strand, within MPMX20_04123at 4318.820 kb on - strand, within MPMX20_04123at 4318.895 kb on + strand, within MPMX20_04123at 4319.062 kb on - strand, within MPMX20_04123at 4319.094 kb on - strand, within MPMX20_04123at 4319.134 kb on + strandat 4319.226 kb on - strandat 4319.250 kb on - strandat 4319.323 kb on + strandat 4319.328 kb on + strandat 4319.336 kb on - strandat 4319.380 kb on + strandat 4319.380 kb on + strandat 4319.380 kb on + strandat 4319.388 kb on - strandat 4319.388 kb on - strandat 4319.412 kb on + strandat 4319.422 kb on - strandat 4319.504 kb on - strandat 4319.542 kb on + strandat 4319.621 kb on + strand, within MPMX20_04124at 4319.621 kb on + strand, within MPMX20_04124at 4319.621 kb on + strand, within MPMX20_04124at 4319.629 kb on - strand, within MPMX20_04124at 4319.685 kb on + strand, within MPMX20_04124at 4319.792 kb on + strand, within MPMX20_04124at 4319.800 kb on - strand, within MPMX20_04124at 4319.814 kb on + strand, within MPMX20_04124at 4319.814 kb on + strand, within MPMX20_04124at 4319.814 kb on + strand, within MPMX20_04124at 4319.814 kb on + strand, within MPMX20_04124at 4319.843 kb on + strand, within MPMX20_04124at 4319.892 kb on - strand, within MPMX20_04124at 4319.894 kb on + strand, within MPMX20_04124at 4319.937 kb on + strand, within MPMX20_04124at 4319.942 kb on + strand, within MPMX20_04124at 4319.959 kb on + strand, within MPMX20_04124at 4320.098 kb on + strand, within MPMX20_04124at 4320.105 kb on - strand, within MPMX20_04124at 4320.105 kb on - strand, within MPMX20_04124at 4320.116 kb on + strand, within MPMX20_04124at 4320.116 kb on + strand, within MPMX20_04124at 4320.124 kb on - strand, within MPMX20_04124at 4320.124 kb on - strand, within MPMX20_04124at 4320.153 kb on - strand, within MPMX20_04124at 4320.198 kb on - strand, within MPMX20_04124at 4320.200 kb on + strand, within MPMX20_04124at 4320.217 kb on + strand, within MPMX20_04124at 4320.238 kb on - strand, within MPMX20_04124

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2590 on RCH2 to a starting OD of 0.001
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4,316,666 - MPMX20_04122 0.13 -0.6
4,316,684 + MPMX20_04122 0.15 -2.0
4,316,749 + MPMX20_04122 0.21 -1.5
4,316,764 + MPMX20_04122 0.23 -2.5
4,316,764 + MPMX20_04122 0.23 -3.0
4,316,764 + MPMX20_04122 0.23 -0.6
4,316,772 - MPMX20_04122 0.23 -1.0
4,316,817 + MPMX20_04122 0.28 -1.8
4,316,817 + MPMX20_04122 0.28 +0.5
4,316,817 + MPMX20_04122 0.28 +0.1
4,316,817 + MPMX20_04122 0.28 -0.5
4,316,825 - MPMX20_04122 0.29 -0.1
4,316,825 - MPMX20_04122 0.29 -2.4
4,316,888 - MPMX20_04122 0.35 -1.0
4,316,934 + MPMX20_04122 0.39 +4.2
4,317,076 - MPMX20_04122 0.53 +1.5
4,317,366 - MPMX20_04122 0.82 -1.5
4,317,366 - MPMX20_04122 0.82 +0.5
4,317,393 + MPMX20_04122 0.84 +0.3
4,317,393 + MPMX20_04122 0.84 +0.3
4,317,393 + MPMX20_04122 0.84 -2.0
4,317,456 + -0.8
4,317,464 - +0.5
4,317,591 + -3.1
4,317,603 + +0.9
4,317,664 - +1.9
4,317,694 + -1.2
4,317,709 - -3.3
4,317,709 - +0.4
4,317,709 - +0.2
4,317,801 + MPMX20_04123 0.10 -0.7
4,317,878 - MPMX20_04123 0.15 +2.1
4,317,881 + MPMX20_04123 0.15 -1.4
4,317,893 + MPMX20_04123 0.16 -0.6
4,317,928 + MPMX20_04123 0.18 -2.9
4,317,930 + MPMX20_04123 0.18 +0.5
4,318,073 + MPMX20_04123 0.27 +1.9
4,318,111 + MPMX20_04123 0.29 -4.1
4,318,111 + MPMX20_04123 0.29 -0.8
4,318,220 - MPMX20_04123 0.36 -1.7
4,318,220 - MPMX20_04123 0.36 +1.0
4,318,220 - MPMX20_04123 0.36 +1.5
4,318,246 + MPMX20_04123 0.37 +1.0
4,318,246 + MPMX20_04123 0.37 -4.0
4,318,254 - MPMX20_04123 0.38 -2.0
4,318,254 - MPMX20_04123 0.38 -1.9
4,318,296 + MPMX20_04123 0.40 -3.2
4,318,303 - MPMX20_04123 0.41 +1.6
4,318,399 + MPMX20_04123 0.46 +0.9
4,318,405 - MPMX20_04123 0.47 +0.0
4,318,443 + MPMX20_04123 0.49 -2.2
4,318,461 - MPMX20_04123 0.50 +0.8
4,318,461 - MPMX20_04123 0.50 -2.0
4,318,475 + MPMX20_04123 0.51 +2.7
4,318,496 + MPMX20_04123 0.52 -0.7
4,318,496 + MPMX20_04123 0.52 +0.5
4,318,646 - MPMX20_04123 0.61 +2.4
4,318,689 + MPMX20_04123 0.64 +0.0
4,318,689 + MPMX20_04123 0.64 -1.9
4,318,689 + MPMX20_04123 0.64 -1.9
4,318,697 - MPMX20_04123 0.65 -0.7
4,318,820 - MPMX20_04123 0.72 +1.1
4,318,895 + MPMX20_04123 0.77 -0.8
4,319,062 - MPMX20_04123 0.87 -0.7
4,319,094 - MPMX20_04123 0.89 -1.2
4,319,134 + -3.1
4,319,226 - +1.2
4,319,250 - +1.2
4,319,323 + -2.4
4,319,328 + -0.3
4,319,336 - +0.8
4,319,380 + +0.3
4,319,380 + -3.3
4,319,380 + -0.2
4,319,388 - +0.3
4,319,388 - -0.5
4,319,412 + -2.7
4,319,422 - +0.2
4,319,504 - -2.3
4,319,542 + -0.9
4,319,621 + MPMX20_04124 0.14 -1.2
4,319,621 + MPMX20_04124 0.14 -1.5
4,319,621 + MPMX20_04124 0.14 -0.6
4,319,629 - MPMX20_04124 0.14 -3.1
4,319,685 + MPMX20_04124 0.18 -0.5
4,319,792 + MPMX20_04124 0.25 -1.9
4,319,800 - MPMX20_04124 0.25 +0.7
4,319,814 + MPMX20_04124 0.26 -1.4
4,319,814 + MPMX20_04124 0.26 -0.3
4,319,814 + MPMX20_04124 0.26 +0.2
4,319,814 + MPMX20_04124 0.26 +0.2
4,319,843 + MPMX20_04124 0.28 -1.2
4,319,892 - MPMX20_04124 0.32 -0.0
4,319,894 + MPMX20_04124 0.32 -0.9
4,319,937 + MPMX20_04124 0.35 +0.3
4,319,942 + MPMX20_04124 0.35 +0.7
4,319,959 + MPMX20_04124 0.36 -0.8
4,320,098 + MPMX20_04124 0.45 -0.6
4,320,105 - MPMX20_04124 0.46 +0.2
4,320,105 - MPMX20_04124 0.46 -0.3
4,320,116 + MPMX20_04124 0.46 -1.2
4,320,116 + MPMX20_04124 0.46 +1.1
4,320,124 - MPMX20_04124 0.47 -3.2
4,320,124 - MPMX20_04124 0.47 -1.0
4,320,153 - MPMX20_04124 0.49 +1.2
4,320,198 - MPMX20_04124 0.52 +0.4
4,320,200 + MPMX20_04124 0.52 -3.9
4,320,217 + MPMX20_04124 0.53 -0.4
4,320,238 - MPMX20_04124 0.55 -0.8

Or see this region's nucleotide sequence