Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02755

Experiment: AMD2036 coinoculated with AMD2590 on RCH2 to a starting OD of 0.001

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02754 and MPMX20_02755 are separated by 40 nucleotidesMPMX20_02755 and MPMX20_02756 are separated by 39 nucleotides MPMX20_02754: MPMX20_02754 - Formate-dependent phosphoribosylglycinamide formyltransferase, at 2,908,390 to 2,909,568 _02754 MPMX20_02755: MPMX20_02755 - KHG/KDPG aldolase, at 2,909,609 to 2,910,250 _02755 MPMX20_02756: MPMX20_02756 - Phosphogluconate dehydratase, at 2,910,290 to 2,912,101 _02756 Position (kb) 2909 2910 2911Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2908.667 kb on + strand, within MPMX20_02754at 2908.667 kb on + strand, within MPMX20_02754at 2908.667 kb on + strand, within MPMX20_02754at 2908.675 kb on - strand, within MPMX20_02754at 2908.690 kb on + strand, within MPMX20_02754at 2908.700 kb on + strand, within MPMX20_02754at 2908.775 kb on + strand, within MPMX20_02754at 2908.894 kb on - strand, within MPMX20_02754at 2908.901 kb on + strand, within MPMX20_02754at 2908.943 kb on - strand, within MPMX20_02754at 2909.239 kb on - strand, within MPMX20_02754at 2909.298 kb on - strand, within MPMX20_02754at 2909.299 kb on - strand, within MPMX20_02754at 2909.396 kb on + strand, within MPMX20_02754at 2909.396 kb on - strand, within MPMX20_02754at 2909.414 kb on + strand, within MPMX20_02754at 2909.415 kb on + strand, within MPMX20_02754at 2909.423 kb on - strand, within MPMX20_02754at 2909.429 kb on - strand, within MPMX20_02754at 2909.485 kb on - strandat 2909.785 kb on - strand, within MPMX20_02755at 2909.815 kb on - strand, within MPMX20_02755at 2909.965 kb on + strand, within MPMX20_02755at 2909.965 kb on + strand, within MPMX20_02755at 2909.965 kb on + strand, within MPMX20_02755at 2909.965 kb on + strand, within MPMX20_02755at 2909.965 kb on + strand, within MPMX20_02755at 2909.968 kb on - strand, within MPMX20_02755at 2909.973 kb on - strand, within MPMX20_02755at 2909.973 kb on - strand, within MPMX20_02755at 2909.973 kb on - strand, within MPMX20_02755at 2909.973 kb on - strand, within MPMX20_02755at 2910.117 kb on - strand, within MPMX20_02755at 2910.207 kb on - strandat 2910.215 kb on - strandat 2910.295 kb on + strandat 2910.305 kb on + strandat 2910.388 kb on + strandat 2910.388 kb on + strandat 2910.388 kb on + strandat 2910.393 kb on + strandat 2910.413 kb on + strandat 2910.448 kb on - strandat 2910.561 kb on + strand, within MPMX20_02756at 2910.818 kb on + strand, within MPMX20_02756at 2910.826 kb on - strand, within MPMX20_02756at 2910.826 kb on - strand, within MPMX20_02756at 2910.826 kb on - strand, within MPMX20_02756at 2910.831 kb on - strand, within MPMX20_02756at 2910.835 kb on + strand, within MPMX20_02756at 2910.836 kb on - strand, within MPMX20_02756at 2910.879 kb on + strand, within MPMX20_02756at 2910.886 kb on + strand, within MPMX20_02756at 2910.887 kb on - strand, within MPMX20_02756at 2910.894 kb on - strand, within MPMX20_02756at 2910.920 kb on - strand, within MPMX20_02756at 2910.920 kb on - strand, within MPMX20_02756at 2910.927 kb on + strand, within MPMX20_02756at 2910.949 kb on + strand, within MPMX20_02756at 2910.949 kb on + strand, within MPMX20_02756at 2910.949 kb on + strand, within MPMX20_02756at 2910.956 kb on + strand, within MPMX20_02756at 2910.957 kb on + strand, within MPMX20_02756at 2910.957 kb on + strand, within MPMX20_02756at 2910.957 kb on - strand, within MPMX20_02756at 2910.957 kb on - strand, within MPMX20_02756at 2910.965 kb on - strand, within MPMX20_02756at 2910.989 kb on + strand, within MPMX20_02756at 2911.056 kb on + strand, within MPMX20_02756at 2911.064 kb on - strand, within MPMX20_02756

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2590 on RCH2 to a starting OD of 0.001
remove
2,908,667 + MPMX20_02754 0.23 -2.3
2,908,667 + MPMX20_02754 0.23 +1.1
2,908,667 + MPMX20_02754 0.23 +0.8
2,908,675 - MPMX20_02754 0.24 +0.2
2,908,690 + MPMX20_02754 0.25 -2.9
2,908,700 + MPMX20_02754 0.26 +1.2
2,908,775 + MPMX20_02754 0.33 -0.7
2,908,894 - MPMX20_02754 0.43 -1.3
2,908,901 + MPMX20_02754 0.43 -0.5
2,908,943 - MPMX20_02754 0.47 -1.1
2,909,239 - MPMX20_02754 0.72 -1.2
2,909,298 - MPMX20_02754 0.77 +0.3
2,909,299 - MPMX20_02754 0.77 -2.2
2,909,396 + MPMX20_02754 0.85 +2.3
2,909,396 - MPMX20_02754 0.85 +0.1
2,909,414 + MPMX20_02754 0.87 +0.4
2,909,415 + MPMX20_02754 0.87 +0.6
2,909,423 - MPMX20_02754 0.88 -3.0
2,909,429 - MPMX20_02754 0.88 +1.2
2,909,485 - -2.2
2,909,785 - MPMX20_02755 0.27 -2.9
2,909,815 - MPMX20_02755 0.32 -4.3
2,909,965 + MPMX20_02755 0.55 -3.0
2,909,965 + MPMX20_02755 0.55 -3.5
2,909,965 + MPMX20_02755 0.55 -4.2
2,909,965 + MPMX20_02755 0.55 -2.3
2,909,965 + MPMX20_02755 0.55 -3.2
2,909,968 - MPMX20_02755 0.56 -3.5
2,909,973 - MPMX20_02755 0.57 -1.1
2,909,973 - MPMX20_02755 0.57 -3.0
2,909,973 - MPMX20_02755 0.57 -2.7
2,909,973 - MPMX20_02755 0.57 -4.1
2,910,117 - MPMX20_02755 0.79 -2.7
2,910,207 - -1.4
2,910,215 - -4.2
2,910,295 + +0.4
2,910,305 + -0.2
2,910,388 + -1.0
2,910,388 + +1.9
2,910,388 + +0.5
2,910,393 + -0.1
2,910,413 + -0.6
2,910,448 - +1.0
2,910,561 + MPMX20_02756 0.15 +1.5
2,910,818 + MPMX20_02756 0.29 +2.5
2,910,826 - MPMX20_02756 0.30 +0.7
2,910,826 - MPMX20_02756 0.30 -2.0
2,910,826 - MPMX20_02756 0.30 +0.6
2,910,831 - MPMX20_02756 0.30 -0.5
2,910,835 + MPMX20_02756 0.30 -0.2
2,910,836 - MPMX20_02756 0.30 -1.5
2,910,879 + MPMX20_02756 0.33 -0.8
2,910,886 + MPMX20_02756 0.33 -0.7
2,910,887 - MPMX20_02756 0.33 +1.9
2,910,894 - MPMX20_02756 0.33 -1.0
2,910,920 - MPMX20_02756 0.35 +1.8
2,910,920 - MPMX20_02756 0.35 +2.4
2,910,927 + MPMX20_02756 0.35 +0.8
2,910,949 + MPMX20_02756 0.36 +0.5
2,910,949 + MPMX20_02756 0.36 +0.3
2,910,949 + MPMX20_02756 0.36 +2.1
2,910,956 + MPMX20_02756 0.37 -1.4
2,910,957 + MPMX20_02756 0.37 -2.3
2,910,957 + MPMX20_02756 0.37 +0.9
2,910,957 - MPMX20_02756 0.37 -1.5
2,910,957 - MPMX20_02756 0.37 -0.2
2,910,965 - MPMX20_02756 0.37 +1.7
2,910,989 + MPMX20_02756 0.39 -4.2
2,911,056 + MPMX20_02756 0.42 -0.4
2,911,064 - MPMX20_02756 0.43 -2.3

Or see this region's nucleotide sequence