Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02754

Experiment: AMD2036 coinoculated with AMD2590 on TSA to a starting OD of 0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02752 and MPMX20_02753 are separated by 85 nucleotidesMPMX20_02753 and MPMX20_02754 are separated by 170 nucleotidesMPMX20_02754 and MPMX20_02755 are separated by 40 nucleotidesMPMX20_02755 and MPMX20_02756 are separated by 39 nucleotides MPMX20_02752: MPMX20_02752 - Protease 2, at 2,905,423 to 2,907,483 _02752 MPMX20_02753: MPMX20_02753 - Inner membrane protein YebE, at 2,907,569 to 2,908,219 _02753 MPMX20_02754: MPMX20_02754 - Formate-dependent phosphoribosylglycinamide formyltransferase, at 2,908,390 to 2,909,568 _02754 MPMX20_02755: MPMX20_02755 - KHG/KDPG aldolase, at 2,909,609 to 2,910,250 _02755 MPMX20_02756: MPMX20_02756 - Phosphogluconate dehydratase, at 2,910,290 to 2,912,101 _02756 Position (kb) 2908 2909 2910Strain fitness (log2 ratio) -3 -2 -1 0 1at 2907.410 kb on + strandat 2907.517 kb on - strandat 2907.570 kb on - strandat 2907.572 kb on + strandat 2907.615 kb on - strandat 2907.643 kb on + strand, within MPMX20_02753at 2907.722 kb on - strand, within MPMX20_02753at 2907.807 kb on - strand, within MPMX20_02753at 2907.809 kb on + strand, within MPMX20_02753at 2907.838 kb on + strand, within MPMX20_02753at 2907.868 kb on - strand, within MPMX20_02753at 2907.964 kb on + strand, within MPMX20_02753at 2908.209 kb on - strandat 2908.230 kb on + strandat 2908.246 kb on - strandat 2908.458 kb on + strandat 2908.493 kb on - strandat 2908.539 kb on - strand, within MPMX20_02754at 2908.553 kb on + strand, within MPMX20_02754at 2908.588 kb on - strand, within MPMX20_02754at 2908.667 kb on + strand, within MPMX20_02754at 2908.667 kb on + strand, within MPMX20_02754at 2908.667 kb on + strand, within MPMX20_02754at 2908.675 kb on - strand, within MPMX20_02754at 2908.690 kb on + strand, within MPMX20_02754at 2908.700 kb on + strand, within MPMX20_02754at 2908.775 kb on + strand, within MPMX20_02754at 2908.894 kb on - strand, within MPMX20_02754at 2908.901 kb on + strand, within MPMX20_02754at 2908.943 kb on - strand, within MPMX20_02754at 2909.239 kb on - strand, within MPMX20_02754at 2909.298 kb on - strand, within MPMX20_02754at 2909.299 kb on - strand, within MPMX20_02754at 2909.396 kb on + strand, within MPMX20_02754at 2909.396 kb on - strand, within MPMX20_02754at 2909.414 kb on + strand, within MPMX20_02754at 2909.415 kb on + strand, within MPMX20_02754at 2909.423 kb on - strand, within MPMX20_02754at 2909.429 kb on - strand, within MPMX20_02754at 2909.485 kb on - strandat 2909.785 kb on - strand, within MPMX20_02755at 2909.815 kb on - strand, within MPMX20_02755at 2909.965 kb on + strand, within MPMX20_02755at 2909.965 kb on + strand, within MPMX20_02755at 2909.965 kb on + strand, within MPMX20_02755at 2909.965 kb on + strand, within MPMX20_02755at 2909.965 kb on + strand, within MPMX20_02755at 2909.968 kb on - strand, within MPMX20_02755at 2909.973 kb on - strand, within MPMX20_02755at 2909.973 kb on - strand, within MPMX20_02755at 2909.973 kb on - strand, within MPMX20_02755at 2909.973 kb on - strand, within MPMX20_02755at 2910.117 kb on - strand, within MPMX20_02755at 2910.207 kb on - strandat 2910.215 kb on - strandat 2910.295 kb on + strandat 2910.305 kb on + strandat 2910.388 kb on + strandat 2910.388 kb on + strandat 2910.388 kb on + strandat 2910.393 kb on + strandat 2910.413 kb on + strandat 2910.448 kb on - strandat 2910.561 kb on + strand, within MPMX20_02756

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2590 on TSA to a starting OD of 0.01
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2,907,410 + -0.4
2,907,517 - +0.1
2,907,570 - -0.9
2,907,572 + -1.1
2,907,615 - -0.6
2,907,643 + MPMX20_02753 0.11 +1.0
2,907,722 - MPMX20_02753 0.24 -0.3
2,907,807 - MPMX20_02753 0.37 -0.6
2,907,809 + MPMX20_02753 0.37 +0.3
2,907,838 + MPMX20_02753 0.41 -0.8
2,907,868 - MPMX20_02753 0.46 +0.8
2,907,964 + MPMX20_02753 0.61 -0.1
2,908,209 - -1.1
2,908,230 + -0.3
2,908,246 - -0.3
2,908,458 + -0.3
2,908,493 - -0.1
2,908,539 - MPMX20_02754 0.13 -0.5
2,908,553 + MPMX20_02754 0.14 +0.6
2,908,588 - MPMX20_02754 0.17 -0.6
2,908,667 + MPMX20_02754 0.23 -0.4
2,908,667 + MPMX20_02754 0.23 -1.0
2,908,667 + MPMX20_02754 0.23 -0.7
2,908,675 - MPMX20_02754 0.24 -0.8
2,908,690 + MPMX20_02754 0.25 -0.6
2,908,700 + MPMX20_02754 0.26 -0.7
2,908,775 + MPMX20_02754 0.33 +1.1
2,908,894 - MPMX20_02754 0.43 -0.2
2,908,901 + MPMX20_02754 0.43 -2.3
2,908,943 - MPMX20_02754 0.47 -0.2
2,909,239 - MPMX20_02754 0.72 -0.5
2,909,298 - MPMX20_02754 0.77 -0.1
2,909,299 - MPMX20_02754 0.77 +0.1
2,909,396 + MPMX20_02754 0.85 -0.9
2,909,396 - MPMX20_02754 0.85 +0.2
2,909,414 + MPMX20_02754 0.87 -0.5
2,909,415 + MPMX20_02754 0.87 +0.6
2,909,423 - MPMX20_02754 0.88 -0.2
2,909,429 - MPMX20_02754 0.88 +0.9
2,909,485 - -1.1
2,909,785 - MPMX20_02755 0.27 +0.4
2,909,815 - MPMX20_02755 0.32 -0.7
2,909,965 + MPMX20_02755 0.55 -0.7
2,909,965 + MPMX20_02755 0.55 -3.7
2,909,965 + MPMX20_02755 0.55 -0.2
2,909,965 + MPMX20_02755 0.55 +1.2
2,909,965 + MPMX20_02755 0.55 -0.4
2,909,968 - MPMX20_02755 0.56 -0.5
2,909,973 - MPMX20_02755 0.57 +0.7
2,909,973 - MPMX20_02755 0.57 -0.7
2,909,973 - MPMX20_02755 0.57 -0.9
2,909,973 - MPMX20_02755 0.57 -1.7
2,910,117 - MPMX20_02755 0.79 -0.9
2,910,207 - -1.6
2,910,215 - -0.6
2,910,295 + -0.1
2,910,305 + -0.1
2,910,388 + -1.0
2,910,388 + +0.7
2,910,388 + -0.5
2,910,393 + -0.2
2,910,413 + -1.1
2,910,448 - -1.1
2,910,561 + MPMX20_02756 0.15 -0.5

Or see this region's nucleotide sequence