Experiment: AMD2036 coinoculated with AMD2590 on TSA to a starting OD of 0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02752 and MPMX20_02753 are separated by 85 nucleotides MPMX20_02753 and MPMX20_02754 are separated by 170 nucleotides MPMX20_02754 and MPMX20_02755 are separated by 40 nucleotides MPMX20_02755 and MPMX20_02756 are separated by 39 nucleotides
MPMX20_02752: MPMX20_02752 - Protease 2, at 2,905,423 to 2,907,483
_02752
MPMX20_02753: MPMX20_02753 - Inner membrane protein YebE, at 2,907,569 to 2,908,219
_02753
MPMX20_02754: MPMX20_02754 - Formate-dependent phosphoribosylglycinamide formyltransferase, at 2,908,390 to 2,909,568
_02754
MPMX20_02755: MPMX20_02755 - KHG/KDPG aldolase, at 2,909,609 to 2,910,250
_02755
MPMX20_02756: MPMX20_02756 - Phosphogluconate dehydratase, at 2,910,290 to 2,912,101
_02756
Position (kb)
2908
2909
2910 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2907.410 kb on + strand at 2907.517 kb on - strand at 2907.570 kb on - strand at 2907.572 kb on + strand at 2907.615 kb on - strand at 2907.643 kb on + strand, within MPMX20_02753 at 2907.722 kb on - strand, within MPMX20_02753 at 2907.807 kb on - strand, within MPMX20_02753 at 2907.809 kb on + strand, within MPMX20_02753 at 2907.838 kb on + strand, within MPMX20_02753 at 2907.868 kb on - strand, within MPMX20_02753 at 2907.964 kb on + strand, within MPMX20_02753 at 2908.209 kb on - strand at 2908.230 kb on + strand at 2908.246 kb on - strand at 2908.458 kb on + strand at 2908.493 kb on - strand at 2908.539 kb on - strand, within MPMX20_02754 at 2908.553 kb on + strand, within MPMX20_02754 at 2908.588 kb on - strand, within MPMX20_02754 at 2908.667 kb on + strand, within MPMX20_02754 at 2908.667 kb on + strand, within MPMX20_02754 at 2908.667 kb on + strand, within MPMX20_02754 at 2908.675 kb on - strand, within MPMX20_02754 at 2908.690 kb on + strand, within MPMX20_02754 at 2908.700 kb on + strand, within MPMX20_02754 at 2908.775 kb on + strand, within MPMX20_02754 at 2908.894 kb on - strand, within MPMX20_02754 at 2908.901 kb on + strand, within MPMX20_02754 at 2908.943 kb on - strand, within MPMX20_02754 at 2909.239 kb on - strand, within MPMX20_02754 at 2909.298 kb on - strand, within MPMX20_02754 at 2909.299 kb on - strand, within MPMX20_02754 at 2909.396 kb on + strand, within MPMX20_02754 at 2909.396 kb on - strand, within MPMX20_02754 at 2909.414 kb on + strand, within MPMX20_02754 at 2909.415 kb on + strand, within MPMX20_02754 at 2909.423 kb on - strand, within MPMX20_02754 at 2909.429 kb on - strand, within MPMX20_02754 at 2909.485 kb on - strand at 2909.785 kb on - strand, within MPMX20_02755 at 2909.815 kb on - strand, within MPMX20_02755 at 2909.965 kb on + strand, within MPMX20_02755 at 2909.965 kb on + strand, within MPMX20_02755 at 2909.965 kb on + strand, within MPMX20_02755 at 2909.965 kb on + strand, within MPMX20_02755 at 2909.965 kb on + strand, within MPMX20_02755 at 2909.968 kb on - strand, within MPMX20_02755 at 2909.973 kb on - strand, within MPMX20_02755 at 2909.973 kb on - strand, within MPMX20_02755 at 2909.973 kb on - strand, within MPMX20_02755 at 2909.973 kb on - strand, within MPMX20_02755 at 2910.117 kb on - strand, within MPMX20_02755 at 2910.207 kb on - strand at 2910.215 kb on - strand at 2910.295 kb on + strand at 2910.305 kb on + strand at 2910.388 kb on + strand at 2910.388 kb on + strand at 2910.388 kb on + strand at 2910.393 kb on + strand at 2910.413 kb on + strand at 2910.448 kb on - strand at 2910.561 kb on + strand, within MPMX20_02756
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2590 on TSA to a starting OD of 0.01 remove 2,907,410 + -0.4 2,907,517 - +0.1 2,907,570 - -0.9 2,907,572 + -1.1 2,907,615 - -0.6 2,907,643 + MPMX20_02753 0.11 +1.0 2,907,722 - MPMX20_02753 0.24 -0.3 2,907,807 - MPMX20_02753 0.37 -0.6 2,907,809 + MPMX20_02753 0.37 +0.3 2,907,838 + MPMX20_02753 0.41 -0.8 2,907,868 - MPMX20_02753 0.46 +0.8 2,907,964 + MPMX20_02753 0.61 -0.1 2,908,209 - -1.1 2,908,230 + -0.3 2,908,246 - -0.3 2,908,458 + -0.3 2,908,493 - -0.1 2,908,539 - MPMX20_02754 0.13 -0.5 2,908,553 + MPMX20_02754 0.14 +0.6 2,908,588 - MPMX20_02754 0.17 -0.6 2,908,667 + MPMX20_02754 0.23 -0.4 2,908,667 + MPMX20_02754 0.23 -1.0 2,908,667 + MPMX20_02754 0.23 -0.7 2,908,675 - MPMX20_02754 0.24 -0.8 2,908,690 + MPMX20_02754 0.25 -0.6 2,908,700 + MPMX20_02754 0.26 -0.7 2,908,775 + MPMX20_02754 0.33 +1.1 2,908,894 - MPMX20_02754 0.43 -0.2 2,908,901 + MPMX20_02754 0.43 -2.3 2,908,943 - MPMX20_02754 0.47 -0.2 2,909,239 - MPMX20_02754 0.72 -0.5 2,909,298 - MPMX20_02754 0.77 -0.1 2,909,299 - MPMX20_02754 0.77 +0.1 2,909,396 + MPMX20_02754 0.85 -0.9 2,909,396 - MPMX20_02754 0.85 +0.2 2,909,414 + MPMX20_02754 0.87 -0.5 2,909,415 + MPMX20_02754 0.87 +0.6 2,909,423 - MPMX20_02754 0.88 -0.2 2,909,429 - MPMX20_02754 0.88 +0.9 2,909,485 - -1.1 2,909,785 - MPMX20_02755 0.27 +0.4 2,909,815 - MPMX20_02755 0.32 -0.7 2,909,965 + MPMX20_02755 0.55 -0.7 2,909,965 + MPMX20_02755 0.55 -3.7 2,909,965 + MPMX20_02755 0.55 -0.2 2,909,965 + MPMX20_02755 0.55 +1.2 2,909,965 + MPMX20_02755 0.55 -0.4 2,909,968 - MPMX20_02755 0.56 -0.5 2,909,973 - MPMX20_02755 0.57 +0.7 2,909,973 - MPMX20_02755 0.57 -0.7 2,909,973 - MPMX20_02755 0.57 -0.9 2,909,973 - MPMX20_02755 0.57 -1.7 2,910,117 - MPMX20_02755 0.79 -0.9 2,910,207 - -1.6 2,910,215 - -0.6 2,910,295 + -0.1 2,910,305 + -0.1 2,910,388 + -1.0 2,910,388 + +0.7 2,910,388 + -0.5 2,910,393 + -0.2 2,910,413 + -1.1 2,910,448 - -1.1 2,910,561 + MPMX20_02756 0.15 -0.5
Or see this region's nucleotide sequence