Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04328

Experiment: AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04326 and MPMX20_04327 are separated by 1 nucleotidesMPMX20_04327 and MPMX20_04328 overlap by 4 nucleotidesMPMX20_04328 and MPMX20_04329 are separated by 73 nucleotides MPMX20_04326: MPMX20_04326 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 4,520,270 to 4,521,340 _04326 MPMX20_04327: MPMX20_04327 - Lactose transport system permease protein LacG, at 4,521,342 to 4,522,187 _04327 MPMX20_04328: MPMX20_04328 - sn-glycerol-3-phosphate transport system permease protein UgpA, at 4,522,184 to 4,523,071 _04328 MPMX20_04329: MPMX20_04329 - sn-glycerol-3-phosphate-binding periplasmic protein UgpB, at 4,523,145 to 4,524,461 _04329 Position (kb) 4522 4523 4524Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4521.223 kb on - strand, within MPMX20_04326at 4521.289 kb on + strandat 4521.341 kb on - strandat 4521.410 kb on + strandat 4521.410 kb on + strandat 4521.418 kb on - strandat 4521.423 kb on - strandat 4521.453 kb on - strand, within MPMX20_04327at 4521.548 kb on + strand, within MPMX20_04327at 4521.548 kb on + strand, within MPMX20_04327at 4521.560 kb on + strand, within MPMX20_04327at 4521.661 kb on + strand, within MPMX20_04327at 4521.661 kb on + strand, within MPMX20_04327at 4521.741 kb on + strand, within MPMX20_04327at 4521.741 kb on + strand, within MPMX20_04327at 4521.741 kb on + strand, within MPMX20_04327at 4521.741 kb on + strand, within MPMX20_04327at 4521.741 kb on + strand, within MPMX20_04327at 4521.741 kb on + strand, within MPMX20_04327at 4521.741 kb on + strand, within MPMX20_04327at 4521.749 kb on - strand, within MPMX20_04327at 4521.749 kb on - strand, within MPMX20_04327at 4521.749 kb on - strand, within MPMX20_04327at 4521.749 kb on - strand, within MPMX20_04327at 4521.774 kb on - strand, within MPMX20_04327at 4521.801 kb on + strand, within MPMX20_04327at 4521.853 kb on + strand, within MPMX20_04327at 4521.863 kb on + strand, within MPMX20_04327at 4521.871 kb on - strand, within MPMX20_04327at 4521.908 kb on + strand, within MPMX20_04327at 4521.923 kb on + strand, within MPMX20_04327at 4521.923 kb on + strand, within MPMX20_04327at 4521.931 kb on - strand, within MPMX20_04327at 4521.931 kb on - strand, within MPMX20_04327at 4521.931 kb on - strand, within MPMX20_04327at 4521.981 kb on + strand, within MPMX20_04327at 4521.994 kb on + strand, within MPMX20_04327at 4521.996 kb on - strand, within MPMX20_04327at 4522.017 kb on - strand, within MPMX20_04327at 4522.036 kb on + strand, within MPMX20_04327at 4522.036 kb on + strand, within MPMX20_04327at 4522.075 kb on - strand, within MPMX20_04327at 4522.166 kb on + strandat 4522.210 kb on - strandat 4522.230 kb on - strandat 4522.337 kb on + strand, within MPMX20_04328at 4522.342 kb on + strand, within MPMX20_04328at 4522.394 kb on + strand, within MPMX20_04328at 4522.394 kb on + strand, within MPMX20_04328at 4522.395 kb on + strand, within MPMX20_04328at 4522.395 kb on + strand, within MPMX20_04328at 4522.395 kb on + strand, within MPMX20_04328at 4522.472 kb on + strand, within MPMX20_04328at 4522.477 kb on + strand, within MPMX20_04328at 4522.477 kb on + strand, within MPMX20_04328at 4522.477 kb on + strand, within MPMX20_04328at 4522.485 kb on - strand, within MPMX20_04328at 4522.485 kb on - strand, within MPMX20_04328at 4522.485 kb on - strand, within MPMX20_04328at 4522.485 kb on - strand, within MPMX20_04328at 4522.508 kb on - strand, within MPMX20_04328at 4522.508 kb on - strand, within MPMX20_04328at 4522.527 kb on - strand, within MPMX20_04328at 4522.534 kb on + strand, within MPMX20_04328at 4522.613 kb on + strand, within MPMX20_04328at 4522.616 kb on - strand, within MPMX20_04328at 4522.632 kb on - strand, within MPMX20_04328at 4522.645 kb on - strand, within MPMX20_04328at 4522.733 kb on - strand, within MPMX20_04328at 4522.759 kb on - strand, within MPMX20_04328at 4522.891 kb on + strand, within MPMX20_04328at 4522.891 kb on + strand, within MPMX20_04328at 4522.896 kb on + strand, within MPMX20_04328at 4522.943 kb on + strand, within MPMX20_04328at 4522.998 kb on + strandat 4523.064 kb on - strandat 4523.073 kb on - strandat 4523.074 kb on - strandat 4523.081 kb on - strandat 4523.089 kb on - strandat 4523.099 kb on + strandat 4523.101 kb on - strandat 4523.105 kb on - strandat 4523.195 kb on + strandat 4523.203 kb on - strandat 4523.205 kb on + strandat 4523.213 kb on - strandat 4523.224 kb on - strandat 4523.277 kb on - strand, within MPMX20_04329at 4523.284 kb on + strand, within MPMX20_04329at 4523.396 kb on + strand, within MPMX20_04329at 4523.404 kb on - strand, within MPMX20_04329at 4523.408 kb on - strand, within MPMX20_04329at 4523.475 kb on + strand, within MPMX20_04329at 4523.511 kb on + strand, within MPMX20_04329at 4523.511 kb on + strand, within MPMX20_04329at 4523.520 kb on - strand, within MPMX20_04329at 4523.520 kb on - strand, within MPMX20_04329at 4523.530 kb on - strand, within MPMX20_04329at 4523.569 kb on + strand, within MPMX20_04329at 4523.600 kb on - strand, within MPMX20_04329at 4523.774 kb on + strand, within MPMX20_04329at 4523.774 kb on + strand, within MPMX20_04329at 4523.774 kb on + strand, within MPMX20_04329at 4523.798 kb on - strand, within MPMX20_04329at 4523.881 kb on - strand, within MPMX20_04329at 4523.881 kb on - strand, within MPMX20_04329at 4523.915 kb on - strand, within MPMX20_04329at 4523.920 kb on + strand, within MPMX20_04329at 4523.927 kb on + strand, within MPMX20_04329at 4523.928 kb on - strand, within MPMX20_04329at 4523.928 kb on - strand, within MPMX20_04329at 4524.023 kb on - strand, within MPMX20_04329

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01
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4,521,223 - MPMX20_04326 0.89 -2.9
4,521,289 + +1.4
4,521,341 - +0.4
4,521,410 + -2.7
4,521,410 + -0.5
4,521,418 - -0.7
4,521,423 - +0.1
4,521,453 - MPMX20_04327 0.13 -2.4
4,521,548 + MPMX20_04327 0.24 +0.5
4,521,548 + MPMX20_04327 0.24 -2.0
4,521,560 + MPMX20_04327 0.26 +0.5
4,521,661 + MPMX20_04327 0.38 +1.4
4,521,661 + MPMX20_04327 0.38 +0.9
4,521,741 + MPMX20_04327 0.47 -2.1
4,521,741 + MPMX20_04327 0.47 +2.5
4,521,741 + MPMX20_04327 0.47 +1.8
4,521,741 + MPMX20_04327 0.47 -0.9
4,521,741 + MPMX20_04327 0.47 +2.5
4,521,741 + MPMX20_04327 0.47 +0.8
4,521,741 + MPMX20_04327 0.47 +1.8
4,521,749 - MPMX20_04327 0.48 -1.1
4,521,749 - MPMX20_04327 0.48 -1.4
4,521,749 - MPMX20_04327 0.48 -3.1
4,521,749 - MPMX20_04327 0.48 +0.0
4,521,774 - MPMX20_04327 0.51 -3.2
4,521,801 + MPMX20_04327 0.54 +1.0
4,521,853 + MPMX20_04327 0.60 +1.4
4,521,863 + MPMX20_04327 0.62 -1.6
4,521,871 - MPMX20_04327 0.63 -1.9
4,521,908 + MPMX20_04327 0.67 +0.7
4,521,923 + MPMX20_04327 0.69 -1.7
4,521,923 + MPMX20_04327 0.69 +1.3
4,521,931 - MPMX20_04327 0.70 -1.7
4,521,931 - MPMX20_04327 0.70 +1.2
4,521,931 - MPMX20_04327 0.70 +1.2
4,521,981 + MPMX20_04327 0.76 +0.7
4,521,994 + MPMX20_04327 0.77 +0.2
4,521,996 - MPMX20_04327 0.77 -0.5
4,522,017 - MPMX20_04327 0.80 -3.5
4,522,036 + MPMX20_04327 0.82 -2.8
4,522,036 + MPMX20_04327 0.82 -2.8
4,522,075 - MPMX20_04327 0.87 -0.0
4,522,166 + +0.8
4,522,210 - -1.2
4,522,230 - +0.6
4,522,337 + MPMX20_04328 0.17 +1.7
4,522,342 + MPMX20_04328 0.18 -3.6
4,522,394 + MPMX20_04328 0.24 +1.0
4,522,394 + MPMX20_04328 0.24 +0.9
4,522,395 + MPMX20_04328 0.24 -0.6
4,522,395 + MPMX20_04328 0.24 +1.4
4,522,395 + MPMX20_04328 0.24 +1.2
4,522,472 + MPMX20_04328 0.32 -1.6
4,522,477 + MPMX20_04328 0.33 +1.3
4,522,477 + MPMX20_04328 0.33 +2.2
4,522,477 + MPMX20_04328 0.33 -0.8
4,522,485 - MPMX20_04328 0.34 +2.0
4,522,485 - MPMX20_04328 0.34 +2.9
4,522,485 - MPMX20_04328 0.34 +0.7
4,522,485 - MPMX20_04328 0.34 +0.4
4,522,508 - MPMX20_04328 0.36 +1.0
4,522,508 - MPMX20_04328 0.36 +1.1
4,522,527 - MPMX20_04328 0.39 +1.6
4,522,534 + MPMX20_04328 0.39 -0.2
4,522,613 + MPMX20_04328 0.48 -2.2
4,522,616 - MPMX20_04328 0.49 -2.8
4,522,632 - MPMX20_04328 0.50 -1.2
4,522,645 - MPMX20_04328 0.52 +0.2
4,522,733 - MPMX20_04328 0.62 +1.0
4,522,759 - MPMX20_04328 0.65 +0.7
4,522,891 + MPMX20_04328 0.80 +0.1
4,522,891 + MPMX20_04328 0.80 +1.2
4,522,896 + MPMX20_04328 0.80 -0.2
4,522,943 + MPMX20_04328 0.85 +0.0
4,522,998 + +0.4
4,523,064 - -0.2
4,523,073 - +1.0
4,523,074 - +2.5
4,523,081 - +1.2
4,523,089 - +1.8
4,523,099 + -0.9
4,523,101 - -0.0
4,523,105 - +1.4
4,523,195 + -3.4
4,523,203 - -1.4
4,523,205 + +0.2
4,523,213 - +1.2
4,523,224 - -0.7
4,523,277 - MPMX20_04329 0.10 -0.2
4,523,284 + MPMX20_04329 0.11 +0.6
4,523,396 + MPMX20_04329 0.19 -1.7
4,523,404 - MPMX20_04329 0.20 +0.6
4,523,408 - MPMX20_04329 0.20 -2.0
4,523,475 + MPMX20_04329 0.25 -3.4
4,523,511 + MPMX20_04329 0.28 -1.5
4,523,511 + MPMX20_04329 0.28 -0.6
4,523,520 - MPMX20_04329 0.28 +0.1
4,523,520 - MPMX20_04329 0.28 -2.4
4,523,530 - MPMX20_04329 0.29 +1.1
4,523,569 + MPMX20_04329 0.32 -1.9
4,523,600 - MPMX20_04329 0.35 +0.5
4,523,774 + MPMX20_04329 0.48 +0.9
4,523,774 + MPMX20_04329 0.48 +0.0
4,523,774 + MPMX20_04329 0.48 +0.2
4,523,798 - MPMX20_04329 0.50 -0.9
4,523,881 - MPMX20_04329 0.56 -0.4
4,523,881 - MPMX20_04329 0.56 +0.1
4,523,915 - MPMX20_04329 0.58 -3.8
4,523,920 + MPMX20_04329 0.59 -0.0
4,523,927 + MPMX20_04329 0.59 -0.8
4,523,928 - MPMX20_04329 0.59 -0.2
4,523,928 - MPMX20_04329 0.59 +3.4
4,524,023 - MPMX20_04329 0.67 +0.5

Or see this region's nucleotide sequence