Experiment: AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04326 and MPMX20_04327 are separated by 1 nucleotides MPMX20_04327 and MPMX20_04328 overlap by 4 nucleotides MPMX20_04328 and MPMX20_04329 are separated by 73 nucleotides
MPMX20_04326: MPMX20_04326 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 4,520,270 to 4,521,340
_04326
MPMX20_04327: MPMX20_04327 - Lactose transport system permease protein LacG, at 4,521,342 to 4,522,187
_04327
MPMX20_04328: MPMX20_04328 - sn-glycerol-3-phosphate transport system permease protein UgpA, at 4,522,184 to 4,523,071
_04328
MPMX20_04329: MPMX20_04329 - sn-glycerol-3-phosphate-binding periplasmic protein UgpB, at 4,523,145 to 4,524,461
_04329
Position (kb)
4522
4523
4524 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4521.223 kb on - strand, within MPMX20_04326 at 4521.289 kb on + strand at 4521.341 kb on - strand at 4521.410 kb on + strand at 4521.410 kb on + strand at 4521.418 kb on - strand at 4521.423 kb on - strand at 4521.453 kb on - strand, within MPMX20_04327 at 4521.548 kb on + strand, within MPMX20_04327 at 4521.548 kb on + strand, within MPMX20_04327 at 4521.560 kb on + strand, within MPMX20_04327 at 4521.661 kb on + strand, within MPMX20_04327 at 4521.661 kb on + strand, within MPMX20_04327 at 4521.741 kb on + strand, within MPMX20_04327 at 4521.741 kb on + strand, within MPMX20_04327 at 4521.741 kb on + strand, within MPMX20_04327 at 4521.741 kb on + strand, within MPMX20_04327 at 4521.741 kb on + strand, within MPMX20_04327 at 4521.741 kb on + strand, within MPMX20_04327 at 4521.741 kb on + strand, within MPMX20_04327 at 4521.749 kb on - strand, within MPMX20_04327 at 4521.749 kb on - strand, within MPMX20_04327 at 4521.749 kb on - strand, within MPMX20_04327 at 4521.749 kb on - strand, within MPMX20_04327 at 4521.774 kb on - strand, within MPMX20_04327 at 4521.801 kb on + strand, within MPMX20_04327 at 4521.853 kb on + strand, within MPMX20_04327 at 4521.863 kb on + strand, within MPMX20_04327 at 4521.871 kb on - strand, within MPMX20_04327 at 4521.908 kb on + strand, within MPMX20_04327 at 4521.923 kb on + strand, within MPMX20_04327 at 4521.923 kb on + strand, within MPMX20_04327 at 4521.931 kb on - strand, within MPMX20_04327 at 4521.931 kb on - strand, within MPMX20_04327 at 4521.931 kb on - strand, within MPMX20_04327 at 4521.981 kb on + strand, within MPMX20_04327 at 4521.994 kb on + strand, within MPMX20_04327 at 4521.996 kb on - strand, within MPMX20_04327 at 4522.017 kb on - strand, within MPMX20_04327 at 4522.036 kb on + strand, within MPMX20_04327 at 4522.036 kb on + strand, within MPMX20_04327 at 4522.075 kb on - strand, within MPMX20_04327 at 4522.166 kb on + strand at 4522.210 kb on - strand at 4522.230 kb on - strand at 4522.337 kb on + strand, within MPMX20_04328 at 4522.342 kb on + strand, within MPMX20_04328 at 4522.394 kb on + strand, within MPMX20_04328 at 4522.394 kb on + strand, within MPMX20_04328 at 4522.395 kb on + strand, within MPMX20_04328 at 4522.395 kb on + strand, within MPMX20_04328 at 4522.395 kb on + strand, within MPMX20_04328 at 4522.472 kb on + strand, within MPMX20_04328 at 4522.477 kb on + strand, within MPMX20_04328 at 4522.477 kb on + strand, within MPMX20_04328 at 4522.477 kb on + strand, within MPMX20_04328 at 4522.485 kb on - strand, within MPMX20_04328 at 4522.485 kb on - strand, within MPMX20_04328 at 4522.485 kb on - strand, within MPMX20_04328 at 4522.485 kb on - strand, within MPMX20_04328 at 4522.508 kb on - strand, within MPMX20_04328 at 4522.508 kb on - strand, within MPMX20_04328 at 4522.527 kb on - strand, within MPMX20_04328 at 4522.534 kb on + strand, within MPMX20_04328 at 4522.613 kb on + strand, within MPMX20_04328 at 4522.616 kb on - strand, within MPMX20_04328 at 4522.632 kb on - strand, within MPMX20_04328 at 4522.645 kb on - strand, within MPMX20_04328 at 4522.733 kb on - strand, within MPMX20_04328 at 4522.759 kb on - strand, within MPMX20_04328 at 4522.891 kb on + strand, within MPMX20_04328 at 4522.891 kb on + strand, within MPMX20_04328 at 4522.896 kb on + strand, within MPMX20_04328 at 4522.943 kb on + strand, within MPMX20_04328 at 4522.998 kb on + strand at 4523.064 kb on - strand at 4523.073 kb on - strand at 4523.074 kb on - strand at 4523.081 kb on - strand at 4523.089 kb on - strand at 4523.099 kb on + strand at 4523.101 kb on - strand at 4523.105 kb on - strand at 4523.195 kb on + strand at 4523.203 kb on - strand at 4523.205 kb on + strand at 4523.213 kb on - strand at 4523.224 kb on - strand at 4523.277 kb on - strand, within MPMX20_04329 at 4523.284 kb on + strand, within MPMX20_04329 at 4523.396 kb on + strand, within MPMX20_04329 at 4523.404 kb on - strand, within MPMX20_04329 at 4523.408 kb on - strand, within MPMX20_04329 at 4523.475 kb on + strand, within MPMX20_04329 at 4523.511 kb on + strand, within MPMX20_04329 at 4523.511 kb on + strand, within MPMX20_04329 at 4523.520 kb on - strand, within MPMX20_04329 at 4523.520 kb on - strand, within MPMX20_04329 at 4523.530 kb on - strand, within MPMX20_04329 at 4523.569 kb on + strand, within MPMX20_04329 at 4523.600 kb on - strand, within MPMX20_04329 at 4523.774 kb on + strand, within MPMX20_04329 at 4523.774 kb on + strand, within MPMX20_04329 at 4523.774 kb on + strand, within MPMX20_04329 at 4523.798 kb on - strand, within MPMX20_04329 at 4523.881 kb on - strand, within MPMX20_04329 at 4523.881 kb on - strand, within MPMX20_04329 at 4523.915 kb on - strand, within MPMX20_04329 at 4523.920 kb on + strand, within MPMX20_04329 at 4523.927 kb on + strand, within MPMX20_04329 at 4523.928 kb on - strand, within MPMX20_04329 at 4523.928 kb on - strand, within MPMX20_04329 at 4524.023 kb on - strand, within MPMX20_04329
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01 remove 4,521,223 - MPMX20_04326 0.89 -2.9 4,521,289 + +1.4 4,521,341 - +0.4 4,521,410 + -2.7 4,521,410 + -0.5 4,521,418 - -0.7 4,521,423 - +0.1 4,521,453 - MPMX20_04327 0.13 -2.4 4,521,548 + MPMX20_04327 0.24 +0.5 4,521,548 + MPMX20_04327 0.24 -2.0 4,521,560 + MPMX20_04327 0.26 +0.5 4,521,661 + MPMX20_04327 0.38 +1.4 4,521,661 + MPMX20_04327 0.38 +0.9 4,521,741 + MPMX20_04327 0.47 -2.1 4,521,741 + MPMX20_04327 0.47 +2.5 4,521,741 + MPMX20_04327 0.47 +1.8 4,521,741 + MPMX20_04327 0.47 -0.9 4,521,741 + MPMX20_04327 0.47 +2.5 4,521,741 + MPMX20_04327 0.47 +0.8 4,521,741 + MPMX20_04327 0.47 +1.8 4,521,749 - MPMX20_04327 0.48 -1.1 4,521,749 - MPMX20_04327 0.48 -1.4 4,521,749 - MPMX20_04327 0.48 -3.1 4,521,749 - MPMX20_04327 0.48 +0.0 4,521,774 - MPMX20_04327 0.51 -3.2 4,521,801 + MPMX20_04327 0.54 +1.0 4,521,853 + MPMX20_04327 0.60 +1.4 4,521,863 + MPMX20_04327 0.62 -1.6 4,521,871 - MPMX20_04327 0.63 -1.9 4,521,908 + MPMX20_04327 0.67 +0.7 4,521,923 + MPMX20_04327 0.69 -1.7 4,521,923 + MPMX20_04327 0.69 +1.3 4,521,931 - MPMX20_04327 0.70 -1.7 4,521,931 - MPMX20_04327 0.70 +1.2 4,521,931 - MPMX20_04327 0.70 +1.2 4,521,981 + MPMX20_04327 0.76 +0.7 4,521,994 + MPMX20_04327 0.77 +0.2 4,521,996 - MPMX20_04327 0.77 -0.5 4,522,017 - MPMX20_04327 0.80 -3.5 4,522,036 + MPMX20_04327 0.82 -2.8 4,522,036 + MPMX20_04327 0.82 -2.8 4,522,075 - MPMX20_04327 0.87 -0.0 4,522,166 + +0.8 4,522,210 - -1.2 4,522,230 - +0.6 4,522,337 + MPMX20_04328 0.17 +1.7 4,522,342 + MPMX20_04328 0.18 -3.6 4,522,394 + MPMX20_04328 0.24 +1.0 4,522,394 + MPMX20_04328 0.24 +0.9 4,522,395 + MPMX20_04328 0.24 -0.6 4,522,395 + MPMX20_04328 0.24 +1.4 4,522,395 + MPMX20_04328 0.24 +1.2 4,522,472 + MPMX20_04328 0.32 -1.6 4,522,477 + MPMX20_04328 0.33 +1.3 4,522,477 + MPMX20_04328 0.33 +2.2 4,522,477 + MPMX20_04328 0.33 -0.8 4,522,485 - MPMX20_04328 0.34 +2.0 4,522,485 - MPMX20_04328 0.34 +2.9 4,522,485 - MPMX20_04328 0.34 +0.7 4,522,485 - MPMX20_04328 0.34 +0.4 4,522,508 - MPMX20_04328 0.36 +1.0 4,522,508 - MPMX20_04328 0.36 +1.1 4,522,527 - MPMX20_04328 0.39 +1.6 4,522,534 + MPMX20_04328 0.39 -0.2 4,522,613 + MPMX20_04328 0.48 -2.2 4,522,616 - MPMX20_04328 0.49 -2.8 4,522,632 - MPMX20_04328 0.50 -1.2 4,522,645 - MPMX20_04328 0.52 +0.2 4,522,733 - MPMX20_04328 0.62 +1.0 4,522,759 - MPMX20_04328 0.65 +0.7 4,522,891 + MPMX20_04328 0.80 +0.1 4,522,891 + MPMX20_04328 0.80 +1.2 4,522,896 + MPMX20_04328 0.80 -0.2 4,522,943 + MPMX20_04328 0.85 +0.0 4,522,998 + +0.4 4,523,064 - -0.2 4,523,073 - +1.0 4,523,074 - +2.5 4,523,081 - +1.2 4,523,089 - +1.8 4,523,099 + -0.9 4,523,101 - -0.0 4,523,105 - +1.4 4,523,195 + -3.4 4,523,203 - -1.4 4,523,205 + +0.2 4,523,213 - +1.2 4,523,224 - -0.7 4,523,277 - MPMX20_04329 0.10 -0.2 4,523,284 + MPMX20_04329 0.11 +0.6 4,523,396 + MPMX20_04329 0.19 -1.7 4,523,404 - MPMX20_04329 0.20 +0.6 4,523,408 - MPMX20_04329 0.20 -2.0 4,523,475 + MPMX20_04329 0.25 -3.4 4,523,511 + MPMX20_04329 0.28 -1.5 4,523,511 + MPMX20_04329 0.28 -0.6 4,523,520 - MPMX20_04329 0.28 +0.1 4,523,520 - MPMX20_04329 0.28 -2.4 4,523,530 - MPMX20_04329 0.29 +1.1 4,523,569 + MPMX20_04329 0.32 -1.9 4,523,600 - MPMX20_04329 0.35 +0.5 4,523,774 + MPMX20_04329 0.48 +0.9 4,523,774 + MPMX20_04329 0.48 +0.0 4,523,774 + MPMX20_04329 0.48 +0.2 4,523,798 - MPMX20_04329 0.50 -0.9 4,523,881 - MPMX20_04329 0.56 -0.4 4,523,881 - MPMX20_04329 0.56 +0.1 4,523,915 - MPMX20_04329 0.58 -3.8 4,523,920 + MPMX20_04329 0.59 -0.0 4,523,927 + MPMX20_04329 0.59 -0.8 4,523,928 - MPMX20_04329 0.59 -0.2 4,523,928 - MPMX20_04329 0.59 +3.4 4,524,023 - MPMX20_04329 0.67 +0.5
Or see this region's nucleotide sequence