Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03749

Experiment: AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03747 and MPMX20_03748 are separated by 162 nucleotidesMPMX20_03748 and MPMX20_03749 are separated by 39 nucleotidesMPMX20_03749 and MPMX20_03750 are separated by 9 nucleotides MPMX20_03747: MPMX20_03747 - Murein hydrolase activator NlpD, at 3,948,953 to 3,949,693 _03747 MPMX20_03748: MPMX20_03748 - Isopentenyl-diphosphate Delta-isomerase, at 3,949,856 to 3,950,398 _03748 MPMX20_03749: MPMX20_03749 - Lysine--tRNA ligase, at 3,950,438 to 3,951,955 _03749 MPMX20_03750: MPMX20_03750 - Peptide chain release factor RF2, at 3,951,965 to 3,952,846 _03750 Position (kb) 3950 3951 3952Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3949.470 kb on - strand, within MPMX20_03747at 3949.477 kb on - strand, within MPMX20_03747at 3949.525 kb on - strand, within MPMX20_03747at 3949.525 kb on - strand, within MPMX20_03747at 3949.546 kb on + strand, within MPMX20_03747at 3949.546 kb on + strand, within MPMX20_03747at 3949.554 kb on - strand, within MPMX20_03747at 3949.554 kb on - strand, within MPMX20_03747at 3949.554 kb on - strand, within MPMX20_03747at 3949.574 kb on - strand, within MPMX20_03747at 3949.587 kb on - strand, within MPMX20_03747at 3949.597 kb on - strand, within MPMX20_03747at 3949.609 kb on + strand, within MPMX20_03747at 3949.631 kb on - strandat 3949.691 kb on + strandat 3949.724 kb on + strandat 3949.724 kb on + strandat 3949.743 kb on - strandat 3949.743 kb on - strandat 3949.750 kb on + strandat 3949.755 kb on + strandat 3949.797 kb on - strandat 3949.799 kb on + strandat 3949.819 kb on + strandat 3949.819 kb on + strandat 3949.921 kb on - strand, within MPMX20_03748at 3949.951 kb on + strand, within MPMX20_03748at 3950.031 kb on + strand, within MPMX20_03748at 3950.047 kb on - strand, within MPMX20_03748at 3950.073 kb on - strand, within MPMX20_03748at 3950.073 kb on - strand, within MPMX20_03748at 3950.120 kb on - strand, within MPMX20_03748at 3950.154 kb on + strand, within MPMX20_03748at 3950.272 kb on + strand, within MPMX20_03748at 3950.278 kb on - strand, within MPMX20_03748at 3950.294 kb on + strand, within MPMX20_03748at 3950.294 kb on + strand, within MPMX20_03748at 3950.328 kb on + strand, within MPMX20_03748at 3950.328 kb on + strand, within MPMX20_03748at 3950.328 kb on + strand, within MPMX20_03748at 3950.329 kb on - strand, within MPMX20_03748at 3950.336 kb on - strand, within MPMX20_03748at 3950.353 kb on + strandat 3950.372 kb on - strandat 3950.383 kb on - strandat 3950.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01
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3,949,470 - MPMX20_03747 0.70 +0.1
3,949,477 - MPMX20_03747 0.71 -4.7
3,949,525 - MPMX20_03747 0.77 +3.2
3,949,525 - MPMX20_03747 0.77 +0.1
3,949,546 + MPMX20_03747 0.80 +0.7
3,949,546 + MPMX20_03747 0.80 -0.1
3,949,554 - MPMX20_03747 0.81 -4.0
3,949,554 - MPMX20_03747 0.81 -1.1
3,949,554 - MPMX20_03747 0.81 -1.2
3,949,574 - MPMX20_03747 0.84 -2.0
3,949,587 - MPMX20_03747 0.86 -1.3
3,949,597 - MPMX20_03747 0.87 -3.0
3,949,609 + MPMX20_03747 0.89 -1.7
3,949,631 - -2.3
3,949,691 + -3.9
3,949,724 + +0.9
3,949,724 + -0.6
3,949,743 - -2.3
3,949,743 - +2.2
3,949,750 + +0.6
3,949,755 + -1.8
3,949,797 - +0.2
3,949,799 + +0.1
3,949,819 + +1.9
3,949,819 + -3.9
3,949,921 - MPMX20_03748 0.12 -2.0
3,949,951 + MPMX20_03748 0.17 +0.6
3,950,031 + MPMX20_03748 0.32 -0.2
3,950,047 - MPMX20_03748 0.35 -0.9
3,950,073 - MPMX20_03748 0.40 -2.8
3,950,073 - MPMX20_03748 0.40 -0.6
3,950,120 - MPMX20_03748 0.49 -1.0
3,950,154 + MPMX20_03748 0.55 -0.2
3,950,272 + MPMX20_03748 0.77 -0.9
3,950,278 - MPMX20_03748 0.78 +1.6
3,950,294 + MPMX20_03748 0.81 +0.7
3,950,294 + MPMX20_03748 0.81 +1.4
3,950,328 + MPMX20_03748 0.87 -1.6
3,950,328 + MPMX20_03748 0.87 -2.4
3,950,328 + MPMX20_03748 0.87 -2.7
3,950,329 - MPMX20_03748 0.87 -2.7
3,950,336 - MPMX20_03748 0.88 -3.5
3,950,353 + -1.9
3,950,372 - +0.8
3,950,383 - -1.2
3,950,448 - -0.1

Or see this region's nucleotide sequence