Experiment: AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03269 and MPMX20_03270 are separated by 239 nucleotides MPMX20_03270 and MPMX20_03271 are separated by 372 nucleotides
MPMX20_03269: MPMX20_03269 - 3-ketoacyl-CoA thiolase FadI, at 3,439,952 to 3,441,262
_03269
MPMX20_03270: MPMX20_03270 - hypothetical protein, at 3,441,502 to 3,441,786
_03270
MPMX20_03271: MPMX20_03271 - Long-chain fatty acid transport protein, at 3,442,159 to 3,443,487
_03271
Position (kb)
3441
3442 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3440.570 kb on + strand, within MPMX20_03269 at 3440.722 kb on - strand, within MPMX20_03269 at 3440.724 kb on + strand, within MPMX20_03269 at 3440.732 kb on - strand, within MPMX20_03269 at 3440.755 kb on + strand, within MPMX20_03269 at 3440.770 kb on + strand, within MPMX20_03269 at 3440.778 kb on - strand, within MPMX20_03269 at 3440.778 kb on - strand, within MPMX20_03269 at 3440.808 kb on - strand, within MPMX20_03269 at 3440.869 kb on + strand, within MPMX20_03269 at 3440.872 kb on + strand, within MPMX20_03269 at 3440.958 kb on - strand, within MPMX20_03269 at 3440.973 kb on - strand, within MPMX20_03269 at 3441.015 kb on - strand, within MPMX20_03269 at 3441.053 kb on + strand, within MPMX20_03269 at 3441.251 kb on + strand at 3441.258 kb on + strand at 3441.258 kb on + strand at 3441.266 kb on - strand at 3441.266 kb on - strand at 3441.272 kb on - strand at 3441.493 kb on + strand at 3441.503 kb on - strand at 3441.505 kb on + strand at 3441.505 kb on + strand at 3441.505 kb on + strand at 3441.505 kb on + strand at 3441.580 kb on + strand, within MPMX20_03270 at 3441.615 kb on + strand, within MPMX20_03270 at 3441.620 kb on + strand, within MPMX20_03270 at 3441.620 kb on + strand, within MPMX20_03270 at 3441.638 kb on + strand, within MPMX20_03270 at 3441.666 kb on - strand, within MPMX20_03270 at 3441.687 kb on + strand, within MPMX20_03270 at 3441.823 kb on - strand at 3441.847 kb on + strand at 3441.866 kb on - strand at 3441.868 kb on + strand at 3442.042 kb on + strand at 3442.042 kb on + strand at 3442.045 kb on - strand at 3442.045 kb on - strand at 3442.050 kb on - strand at 3442.081 kb on + strand at 3442.081 kb on + strand at 3442.087 kb on + strand at 3442.087 kb on + strand at 3442.089 kb on - strand at 3442.095 kb on - strand at 3442.095 kb on - strand at 3442.095 kb on - strand at 3442.095 kb on - strand at 3442.157 kb on - strand at 3442.157 kb on - strand at 3442.202 kb on - strand at 3442.224 kb on + strand at 3442.267 kb on + strand at 3442.267 kb on + strand at 3442.275 kb on - strand at 3442.303 kb on - strand, within MPMX20_03271 at 3442.339 kb on - strand, within MPMX20_03271 at 3442.484 kb on - strand, within MPMX20_03271 at 3442.514 kb on - strand, within MPMX20_03271 at 3442.528 kb on - strand, within MPMX20_03271 at 3442.544 kb on - strand, within MPMX20_03271 at 3442.615 kb on - strand, within MPMX20_03271 at 3442.622 kb on - strand, within MPMX20_03271 at 3442.631 kb on - strand, within MPMX20_03271 at 3442.743 kb on - strand, within MPMX20_03271
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01 remove 3,440,570 + MPMX20_03269 0.47 -2.3 3,440,722 - MPMX20_03269 0.59 +1.5 3,440,724 + MPMX20_03269 0.59 -1.3 3,440,732 - MPMX20_03269 0.59 -3.3 3,440,755 + MPMX20_03269 0.61 +0.8 3,440,770 + MPMX20_03269 0.62 +0.8 3,440,778 - MPMX20_03269 0.63 +0.7 3,440,778 - MPMX20_03269 0.63 -0.4 3,440,808 - MPMX20_03269 0.65 +1.9 3,440,869 + MPMX20_03269 0.70 -1.3 3,440,872 + MPMX20_03269 0.70 +2.1 3,440,958 - MPMX20_03269 0.77 -3.3 3,440,973 - MPMX20_03269 0.78 +2.0 3,441,015 - MPMX20_03269 0.81 -3.1 3,441,053 + MPMX20_03269 0.84 +2.5 3,441,251 + -0.9 3,441,258 + +1.3 3,441,258 + -0.5 3,441,266 - +0.3 3,441,266 - -1.2 3,441,272 - +0.8 3,441,493 + -1.2 3,441,503 - -0.2 3,441,505 + -0.0 3,441,505 + +0.1 3,441,505 + +0.7 3,441,505 + +1.3 3,441,580 + MPMX20_03270 0.27 +0.7 3,441,615 + MPMX20_03270 0.40 +0.8 3,441,620 + MPMX20_03270 0.41 +1.2 3,441,620 + MPMX20_03270 0.41 +2.8 3,441,638 + MPMX20_03270 0.48 -0.7 3,441,666 - MPMX20_03270 0.58 +0.4 3,441,687 + MPMX20_03270 0.65 -4.2 3,441,823 - +0.6 3,441,847 + +1.0 3,441,866 - -1.1 3,441,868 + -0.2 3,442,042 + -0.1 3,442,042 + -0.4 3,442,045 - +0.7 3,442,045 - +0.6 3,442,050 - -0.1 3,442,081 + +1.0 3,442,081 + -0.7 3,442,087 + +0.4 3,442,087 + -0.2 3,442,089 - -0.0 3,442,095 - -0.8 3,442,095 - +0.7 3,442,095 - -3.2 3,442,095 - -1.0 3,442,157 - -2.2 3,442,157 - -3.0 3,442,202 - -0.7 3,442,224 + +1.5 3,442,267 + +2.0 3,442,267 + -0.6 3,442,275 - -0.5 3,442,303 - MPMX20_03271 0.11 -3.5 3,442,339 - MPMX20_03271 0.14 +0.2 3,442,484 - MPMX20_03271 0.24 -4.3 3,442,514 - MPMX20_03271 0.27 -1.2 3,442,528 - MPMX20_03271 0.28 -2.2 3,442,544 - MPMX20_03271 0.29 +1.3 3,442,615 - MPMX20_03271 0.34 -3.2 3,442,622 - MPMX20_03271 0.35 +2.4 3,442,631 - MPMX20_03271 0.36 -1.8 3,442,743 - MPMX20_03271 0.44 -3.9
Or see this region's nucleotide sequence