Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03270

Experiment: AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03269 and MPMX20_03270 are separated by 239 nucleotidesMPMX20_03270 and MPMX20_03271 are separated by 372 nucleotides MPMX20_03269: MPMX20_03269 - 3-ketoacyl-CoA thiolase FadI, at 3,439,952 to 3,441,262 _03269 MPMX20_03270: MPMX20_03270 - hypothetical protein, at 3,441,502 to 3,441,786 _03270 MPMX20_03271: MPMX20_03271 - Long-chain fatty acid transport protein, at 3,442,159 to 3,443,487 _03271 Position (kb) 3441 3442Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3440.570 kb on + strand, within MPMX20_03269at 3440.722 kb on - strand, within MPMX20_03269at 3440.724 kb on + strand, within MPMX20_03269at 3440.732 kb on - strand, within MPMX20_03269at 3440.755 kb on + strand, within MPMX20_03269at 3440.770 kb on + strand, within MPMX20_03269at 3440.778 kb on - strand, within MPMX20_03269at 3440.778 kb on - strand, within MPMX20_03269at 3440.808 kb on - strand, within MPMX20_03269at 3440.869 kb on + strand, within MPMX20_03269at 3440.872 kb on + strand, within MPMX20_03269at 3440.958 kb on - strand, within MPMX20_03269at 3440.973 kb on - strand, within MPMX20_03269at 3441.015 kb on - strand, within MPMX20_03269at 3441.053 kb on + strand, within MPMX20_03269at 3441.251 kb on + strandat 3441.258 kb on + strandat 3441.258 kb on + strandat 3441.266 kb on - strandat 3441.266 kb on - strandat 3441.272 kb on - strandat 3441.493 kb on + strandat 3441.503 kb on - strandat 3441.505 kb on + strandat 3441.505 kb on + strandat 3441.505 kb on + strandat 3441.505 kb on + strandat 3441.580 kb on + strand, within MPMX20_03270at 3441.615 kb on + strand, within MPMX20_03270at 3441.620 kb on + strand, within MPMX20_03270at 3441.620 kb on + strand, within MPMX20_03270at 3441.638 kb on + strand, within MPMX20_03270at 3441.666 kb on - strand, within MPMX20_03270at 3441.687 kb on + strand, within MPMX20_03270at 3441.823 kb on - strandat 3441.847 kb on + strandat 3441.866 kb on - strandat 3441.868 kb on + strandat 3442.042 kb on + strandat 3442.042 kb on + strandat 3442.045 kb on - strandat 3442.045 kb on - strandat 3442.050 kb on - strandat 3442.081 kb on + strandat 3442.081 kb on + strandat 3442.087 kb on + strandat 3442.087 kb on + strandat 3442.089 kb on - strandat 3442.095 kb on - strandat 3442.095 kb on - strandat 3442.095 kb on - strandat 3442.095 kb on - strandat 3442.157 kb on - strandat 3442.157 kb on - strandat 3442.202 kb on - strandat 3442.224 kb on + strandat 3442.267 kb on + strandat 3442.267 kb on + strandat 3442.275 kb on - strandat 3442.303 kb on - strand, within MPMX20_03271at 3442.339 kb on - strand, within MPMX20_03271at 3442.484 kb on - strand, within MPMX20_03271at 3442.514 kb on - strand, within MPMX20_03271at 3442.528 kb on - strand, within MPMX20_03271at 3442.544 kb on - strand, within MPMX20_03271at 3442.615 kb on - strand, within MPMX20_03271at 3442.622 kb on - strand, within MPMX20_03271at 3442.631 kb on - strand, within MPMX20_03271at 3442.743 kb on - strand, within MPMX20_03271

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01
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3,440,570 + MPMX20_03269 0.47 -2.3
3,440,722 - MPMX20_03269 0.59 +1.5
3,440,724 + MPMX20_03269 0.59 -1.3
3,440,732 - MPMX20_03269 0.59 -3.3
3,440,755 + MPMX20_03269 0.61 +0.8
3,440,770 + MPMX20_03269 0.62 +0.8
3,440,778 - MPMX20_03269 0.63 +0.7
3,440,778 - MPMX20_03269 0.63 -0.4
3,440,808 - MPMX20_03269 0.65 +1.9
3,440,869 + MPMX20_03269 0.70 -1.3
3,440,872 + MPMX20_03269 0.70 +2.1
3,440,958 - MPMX20_03269 0.77 -3.3
3,440,973 - MPMX20_03269 0.78 +2.0
3,441,015 - MPMX20_03269 0.81 -3.1
3,441,053 + MPMX20_03269 0.84 +2.5
3,441,251 + -0.9
3,441,258 + +1.3
3,441,258 + -0.5
3,441,266 - +0.3
3,441,266 - -1.2
3,441,272 - +0.8
3,441,493 + -1.2
3,441,503 - -0.2
3,441,505 + -0.0
3,441,505 + +0.1
3,441,505 + +0.7
3,441,505 + +1.3
3,441,580 + MPMX20_03270 0.27 +0.7
3,441,615 + MPMX20_03270 0.40 +0.8
3,441,620 + MPMX20_03270 0.41 +1.2
3,441,620 + MPMX20_03270 0.41 +2.8
3,441,638 + MPMX20_03270 0.48 -0.7
3,441,666 - MPMX20_03270 0.58 +0.4
3,441,687 + MPMX20_03270 0.65 -4.2
3,441,823 - +0.6
3,441,847 + +1.0
3,441,866 - -1.1
3,441,868 + -0.2
3,442,042 + -0.1
3,442,042 + -0.4
3,442,045 - +0.7
3,442,045 - +0.6
3,442,050 - -0.1
3,442,081 + +1.0
3,442,081 + -0.7
3,442,087 + +0.4
3,442,087 + -0.2
3,442,089 - -0.0
3,442,095 - -0.8
3,442,095 - +0.7
3,442,095 - -3.2
3,442,095 - -1.0
3,442,157 - -2.2
3,442,157 - -3.0
3,442,202 - -0.7
3,442,224 + +1.5
3,442,267 + +2.0
3,442,267 + -0.6
3,442,275 - -0.5
3,442,303 - MPMX20_03271 0.11 -3.5
3,442,339 - MPMX20_03271 0.14 +0.2
3,442,484 - MPMX20_03271 0.24 -4.3
3,442,514 - MPMX20_03271 0.27 -1.2
3,442,528 - MPMX20_03271 0.28 -2.2
3,442,544 - MPMX20_03271 0.29 +1.3
3,442,615 - MPMX20_03271 0.34 -3.2
3,442,622 - MPMX20_03271 0.35 +2.4
3,442,631 - MPMX20_03271 0.36 -1.8
3,442,743 - MPMX20_03271 0.44 -3.9

Or see this region's nucleotide sequence