Experiment: AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00798 and MPMX20_00799 are separated by 10 nucleotides MPMX20_00799 and MPMX20_00800 are separated by 173 nucleotides
MPMX20_00798: MPMX20_00798 - Type II secretion system protein E, at 834,612 to 835,994
_00798
MPMX20_00799: MPMX20_00799 - Fimbrial protein, at 836,005 to 836,442
_00799
MPMX20_00800: MPMX20_00800 - Nicotinate-nucleotide pyrophosphorylase [carboxylating], at 836,616 to 837,509
_00800
Position (kb) 836
837 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 835.040 kb on + strand, within MPMX20_00798 at 835.062 kb on + strand, within MPMX20_00798 at 835.199 kb on + strand, within MPMX20_00798 at 835.199 kb on + strand, within MPMX20_00798 at 835.208 kb on - strand, within MPMX20_00798 at 835.208 kb on - strand, within MPMX20_00798 at 835.263 kb on - strand, within MPMX20_00798 at 835.302 kb on - strand, within MPMX20_00798 at 835.479 kb on + strand, within MPMX20_00798 at 835.492 kb on - strand, within MPMX20_00798 at 835.525 kb on + strand, within MPMX20_00798 at 835.533 kb on - strand, within MPMX20_00798 at 835.533 kb on - strand, within MPMX20_00798 at 835.539 kb on + strand, within MPMX20_00798 at 835.680 kb on - strand, within MPMX20_00798 at 835.682 kb on - strand, within MPMX20_00798 at 835.682 kb on - strand, within MPMX20_00798 at 835.733 kb on + strand, within MPMX20_00798 at 835.790 kb on + strand, within MPMX20_00798 at 835.828 kb on + strand, within MPMX20_00798 at 835.884 kb on - strand at 835.884 kb on - strand at 835.886 kb on + strand at 835.894 kb on - strand at 835.899 kb on - strand at 835.918 kb on - strand at 836.003 kb on + strand at 836.033 kb on + strand at 836.033 kb on + strand at 836.041 kb on - strand at 836.088 kb on - strand, within MPMX20_00799 at 836.090 kb on + strand, within MPMX20_00799 at 836.110 kb on + strand, within MPMX20_00799 at 836.110 kb on + strand, within MPMX20_00799 at 836.149 kb on + strand, within MPMX20_00799 at 836.228 kb on + strand, within MPMX20_00799 at 836.248 kb on + strand, within MPMX20_00799 at 836.248 kb on + strand, within MPMX20_00799 at 836.256 kb on - strand, within MPMX20_00799 at 836.261 kb on + strand, within MPMX20_00799 at 836.273 kb on + strand, within MPMX20_00799 at 836.281 kb on - strand, within MPMX20_00799 at 836.385 kb on + strand, within MPMX20_00799 at 836.417 kb on - strand at 836.417 kb on - strand at 836.418 kb on + strand at 836.425 kb on + strand at 836.437 kb on + strand at 836.437 kb on + strand at 836.445 kb on - strand at 836.472 kb on - strand at 836.546 kb on + strand at 836.546 kb on + strand at 836.546 kb on + strand at 836.554 kb on - strand at 836.554 kb on - strand at 836.653 kb on + strand at 836.661 kb on - strand at 836.719 kb on + strand, within MPMX20_00800 at 836.791 kb on + strand, within MPMX20_00800 at 836.799 kb on - strand, within MPMX20_00800 at 836.844 kb on - strand, within MPMX20_00800 at 836.885 kb on - strand, within MPMX20_00800 at 836.888 kb on + strand, within MPMX20_00800 at 836.966 kb on + strand, within MPMX20_00800 at 836.984 kb on - strand, within MPMX20_00800 at 836.998 kb on + strand, within MPMX20_00800 at 837.009 kb on - strand, within MPMX20_00800 at 837.009 kb on - strand, within MPMX20_00800 at 837.018 kb on + strand, within MPMX20_00800 at 837.026 kb on - strand, within MPMX20_00800 at 837.060 kb on + strand, within MPMX20_00800 at 837.105 kb on + strand, within MPMX20_00800 at 837.198 kb on - strand, within MPMX20_00800 at 837.284 kb on + strand, within MPMX20_00800 at 837.284 kb on + strand, within MPMX20_00800 at 837.289 kb on + strand, within MPMX20_00800 at 837.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01 remove 835,040 + MPMX20_00798 0.31 +1.0 835,062 + MPMX20_00798 0.33 +0.7 835,199 + MPMX20_00798 0.42 -0.4 835,199 + MPMX20_00798 0.42 -2.6 835,208 - MPMX20_00798 0.43 +1.8 835,208 - MPMX20_00798 0.43 +0.3 835,263 - MPMX20_00798 0.47 +1.2 835,302 - MPMX20_00798 0.50 -0.6 835,479 + MPMX20_00798 0.63 +2.3 835,492 - MPMX20_00798 0.64 -1.1 835,525 + MPMX20_00798 0.66 +2.1 835,533 - MPMX20_00798 0.67 +2.8 835,533 - MPMX20_00798 0.67 -2.4 835,539 + MPMX20_00798 0.67 -2.1 835,680 - MPMX20_00798 0.77 -2.6 835,682 - MPMX20_00798 0.77 -1.9 835,682 - MPMX20_00798 0.77 -2.7 835,733 + MPMX20_00798 0.81 -1.5 835,790 + MPMX20_00798 0.85 -2.6 835,828 + MPMX20_00798 0.88 -0.1 835,884 - +0.3 835,884 - -1.4 835,886 + -0.3 835,894 - -3.4 835,899 - -0.0 835,918 - -1.3 836,003 + +1.5 836,033 + -2.6 836,033 + +0.6 836,041 - +1.2 836,088 - MPMX20_00799 0.19 +0.4 836,090 + MPMX20_00799 0.19 +2.0 836,110 + MPMX20_00799 0.24 -0.2 836,110 + MPMX20_00799 0.24 +0.4 836,149 + MPMX20_00799 0.33 -3.3 836,228 + MPMX20_00799 0.51 +2.2 836,248 + MPMX20_00799 0.55 -0.3 836,248 + MPMX20_00799 0.55 -0.8 836,256 - MPMX20_00799 0.57 -1.0 836,261 + MPMX20_00799 0.58 -0.6 836,273 + MPMX20_00799 0.61 +0.4 836,281 - MPMX20_00799 0.63 +0.3 836,385 + MPMX20_00799 0.87 -0.3 836,417 - -0.5 836,417 - +0.3 836,418 + +0.0 836,425 + +1.3 836,437 + +0.3 836,437 + -0.5 836,445 - +1.2 836,472 - -2.2 836,546 + -1.3 836,546 + -3.5 836,546 + +0.3 836,554 - -4.1 836,554 - -2.1 836,653 + -1.3 836,661 - -0.3 836,719 + MPMX20_00800 0.12 -1.4 836,791 + MPMX20_00800 0.20 -1.3 836,799 - MPMX20_00800 0.20 +0.7 836,844 - MPMX20_00800 0.26 +2.0 836,885 - MPMX20_00800 0.30 -1.5 836,888 + MPMX20_00800 0.30 -0.2 836,966 + MPMX20_00800 0.39 +0.8 836,984 - MPMX20_00800 0.41 +0.5 836,998 + MPMX20_00800 0.43 -2.0 837,009 - MPMX20_00800 0.44 +0.5 837,009 - MPMX20_00800 0.44 -1.6 837,018 + MPMX20_00800 0.45 +0.9 837,026 - MPMX20_00800 0.46 -0.9 837,060 + MPMX20_00800 0.50 -4.1 837,105 + MPMX20_00800 0.55 -0.6 837,198 - MPMX20_00800 0.65 +0.4 837,284 + MPMX20_00800 0.75 -0.8 837,284 + MPMX20_00800 0.75 -1.6 837,289 + MPMX20_00800 0.75 -2.2 837,425 + -2.4
Or see this region's nucleotide sequence