Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01385

Experiment: AMD2036 coinoculated with AMD2587 on RCH2 to a starting OD of 0.0001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01384 and MPMX20_01385 are separated by 3 nucleotidesMPMX20_01385 and MPMX20_01386 are separated by 9 nucleotides MPMX20_01384: MPMX20_01384 - Galactokinase, at 1,446,125 to 1,447,273 _01384 MPMX20_01385: MPMX20_01385 - Galactose-1-phosphate uridylyltransferase, at 1,447,277 to 1,448,323 _01385 MPMX20_01386: MPMX20_01386 - UDP-glucose 4-epimerase, at 1,448,333 to 1,449,349 _01386 Position (kb) 1447 1448 1449Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1446.312 kb on + strand, within MPMX20_01384at 1446.420 kb on + strand, within MPMX20_01384at 1446.428 kb on - strand, within MPMX20_01384at 1446.600 kb on + strand, within MPMX20_01384at 1446.612 kb on + strand, within MPMX20_01384at 1446.616 kb on + strand, within MPMX20_01384at 1446.620 kb on - strand, within MPMX20_01384at 1446.682 kb on - strand, within MPMX20_01384at 1446.726 kb on + strand, within MPMX20_01384at 1446.734 kb on - strand, within MPMX20_01384at 1446.736 kb on + strand, within MPMX20_01384at 1446.741 kb on + strand, within MPMX20_01384at 1446.749 kb on - strand, within MPMX20_01384at 1446.880 kb on + strand, within MPMX20_01384at 1446.999 kb on - strand, within MPMX20_01384at 1447.021 kb on + strand, within MPMX20_01384at 1447.100 kb on - strand, within MPMX20_01384at 1447.109 kb on + strand, within MPMX20_01384at 1447.109 kb on + strand, within MPMX20_01384at 1447.117 kb on - strand, within MPMX20_01384at 1447.117 kb on - strand, within MPMX20_01384at 1447.117 kb on - strand, within MPMX20_01384at 1447.144 kb on + strand, within MPMX20_01384at 1447.147 kb on - strand, within MPMX20_01384at 1447.222 kb on - strandat 1447.290 kb on - strandat 1447.336 kb on + strandat 1447.407 kb on - strand, within MPMX20_01385at 1447.417 kb on - strand, within MPMX20_01385at 1447.466 kb on + strand, within MPMX20_01385at 1447.469 kb on + strand, within MPMX20_01385at 1447.472 kb on - strand, within MPMX20_01385at 1447.474 kb on - strand, within MPMX20_01385at 1447.509 kb on + strand, within MPMX20_01385at 1447.519 kb on + strand, within MPMX20_01385at 1447.527 kb on - strand, within MPMX20_01385at 1447.564 kb on - strand, within MPMX20_01385at 1447.573 kb on + strand, within MPMX20_01385at 1447.593 kb on - strand, within MPMX20_01385at 1447.677 kb on + strand, within MPMX20_01385at 1447.716 kb on - strand, within MPMX20_01385at 1447.718 kb on + strand, within MPMX20_01385at 1447.775 kb on + strand, within MPMX20_01385at 1447.809 kb on - strand, within MPMX20_01385at 1447.812 kb on + strand, within MPMX20_01385at 1447.812 kb on + strand, within MPMX20_01385at 1447.817 kb on + strand, within MPMX20_01385at 1447.837 kb on + strand, within MPMX20_01385at 1447.837 kb on + strand, within MPMX20_01385at 1447.837 kb on + strand, within MPMX20_01385at 1447.837 kb on + strand, within MPMX20_01385at 1447.837 kb on + strand, within MPMX20_01385at 1447.837 kb on + strand, within MPMX20_01385at 1447.845 kb on - strand, within MPMX20_01385at 1447.845 kb on - strand, within MPMX20_01385at 1447.845 kb on - strand, within MPMX20_01385at 1447.845 kb on - strand, within MPMX20_01385at 1447.845 kb on - strand, within MPMX20_01385at 1447.845 kb on - strand, within MPMX20_01385at 1447.855 kb on - strand, within MPMX20_01385at 1447.876 kb on + strand, within MPMX20_01385at 1447.882 kb on - strand, within MPMX20_01385at 1447.884 kb on - strand, within MPMX20_01385at 1447.884 kb on - strand, within MPMX20_01385at 1447.893 kb on + strand, within MPMX20_01385at 1447.893 kb on + strand, within MPMX20_01385at 1447.895 kb on - strand, within MPMX20_01385at 1447.903 kb on + strand, within MPMX20_01385at 1447.903 kb on + strand, within MPMX20_01385at 1447.903 kb on + strand, within MPMX20_01385at 1447.911 kb on - strand, within MPMX20_01385at 1447.911 kb on - strand, within MPMX20_01385at 1447.926 kb on + strand, within MPMX20_01385at 1448.004 kb on - strand, within MPMX20_01385at 1448.183 kb on - strand, within MPMX20_01385at 1448.209 kb on + strand, within MPMX20_01385at 1448.223 kb on + strandat 1448.278 kb on + strandat 1448.345 kb on + strandat 1448.502 kb on + strand, within MPMX20_01386at 1448.537 kb on + strand, within MPMX20_01386at 1448.537 kb on - strand, within MPMX20_01386at 1448.545 kb on - strand, within MPMX20_01386at 1448.570 kb on - strand, within MPMX20_01386at 1448.592 kb on - strand, within MPMX20_01386at 1448.635 kb on + strand, within MPMX20_01386at 1448.638 kb on - strand, within MPMX20_01386at 1448.662 kb on + strand, within MPMX20_01386at 1448.662 kb on + strand, within MPMX20_01386at 1448.664 kb on + strand, within MPMX20_01386at 1448.664 kb on + strand, within MPMX20_01386at 1448.665 kb on - strand, within MPMX20_01386at 1448.670 kb on - strand, within MPMX20_01386at 1448.670 kb on - strand, within MPMX20_01386at 1448.670 kb on - strand, within MPMX20_01386at 1448.746 kb on + strand, within MPMX20_01386at 1448.765 kb on + strand, within MPMX20_01386at 1448.790 kb on + strand, within MPMX20_01386at 1448.810 kb on - strand, within MPMX20_01386at 1448.812 kb on + strand, within MPMX20_01386at 1448.832 kb on + strand, within MPMX20_01386at 1448.868 kb on + strand, within MPMX20_01386at 1448.933 kb on - strand, within MPMX20_01386at 1449.089 kb on + strand, within MPMX20_01386at 1449.191 kb on + strand, within MPMX20_01386at 1449.243 kb on + strand, within MPMX20_01386at 1449.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on RCH2 to a starting OD of 0.0001
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1,446,312 + MPMX20_01384 0.16 -0.1
1,446,420 + MPMX20_01384 0.26 -2.7
1,446,428 - MPMX20_01384 0.26 -0.1
1,446,600 + MPMX20_01384 0.41 -1.4
1,446,612 + MPMX20_01384 0.42 -0.1
1,446,616 + MPMX20_01384 0.43 +0.4
1,446,620 - MPMX20_01384 0.43 -0.4
1,446,682 - MPMX20_01384 0.48 +0.3
1,446,726 + MPMX20_01384 0.52 -1.9
1,446,734 - MPMX20_01384 0.53 -0.2
1,446,736 + MPMX20_01384 0.53 -2.0
1,446,741 + MPMX20_01384 0.54 -0.9
1,446,749 - MPMX20_01384 0.54 -0.3
1,446,880 + MPMX20_01384 0.66 -1.5
1,446,999 - MPMX20_01384 0.76 +0.4
1,447,021 + MPMX20_01384 0.78 +0.2
1,447,100 - MPMX20_01384 0.85 +0.0
1,447,109 + MPMX20_01384 0.86 -0.1
1,447,109 + MPMX20_01384 0.86 +0.4
1,447,117 - MPMX20_01384 0.86 -0.1
1,447,117 - MPMX20_01384 0.86 -0.5
1,447,117 - MPMX20_01384 0.86 +0.5
1,447,144 + MPMX20_01384 0.89 -1.9
1,447,147 - MPMX20_01384 0.89 -0.3
1,447,222 - +0.5
1,447,290 - -0.2
1,447,336 + -1.6
1,447,407 - MPMX20_01385 0.12 -1.4
1,447,417 - MPMX20_01385 0.13 -1.2
1,447,466 + MPMX20_01385 0.18 +1.8
1,447,469 + MPMX20_01385 0.18 +0.0
1,447,472 - MPMX20_01385 0.19 -0.8
1,447,474 - MPMX20_01385 0.19 -1.1
1,447,509 + MPMX20_01385 0.22 -1.6
1,447,519 + MPMX20_01385 0.23 +0.2
1,447,527 - MPMX20_01385 0.24 -0.5
1,447,564 - MPMX20_01385 0.27 +0.2
1,447,573 + MPMX20_01385 0.28 -0.8
1,447,593 - MPMX20_01385 0.30 -3.0
1,447,677 + MPMX20_01385 0.38 -0.8
1,447,716 - MPMX20_01385 0.42 -1.1
1,447,718 + MPMX20_01385 0.42 +0.2
1,447,775 + MPMX20_01385 0.48 -1.0
1,447,809 - MPMX20_01385 0.51 -3.1
1,447,812 + MPMX20_01385 0.51 +0.4
1,447,812 + MPMX20_01385 0.51 +0.0
1,447,817 + MPMX20_01385 0.52 -0.2
1,447,837 + MPMX20_01385 0.53 -0.9
1,447,837 + MPMX20_01385 0.53 +0.3
1,447,837 + MPMX20_01385 0.53 -1.0
1,447,837 + MPMX20_01385 0.53 -0.2
1,447,837 + MPMX20_01385 0.53 -1.0
1,447,837 + MPMX20_01385 0.53 +0.7
1,447,845 - MPMX20_01385 0.54 -0.1
1,447,845 - MPMX20_01385 0.54 -1.8
1,447,845 - MPMX20_01385 0.54 -1.0
1,447,845 - MPMX20_01385 0.54 -2.0
1,447,845 - MPMX20_01385 0.54 -0.9
1,447,845 - MPMX20_01385 0.54 +1.2
1,447,855 - MPMX20_01385 0.55 -1.3
1,447,876 + MPMX20_01385 0.57 +0.2
1,447,882 - MPMX20_01385 0.58 -0.6
1,447,884 - MPMX20_01385 0.58 -2.4
1,447,884 - MPMX20_01385 0.58 +0.4
1,447,893 + MPMX20_01385 0.59 +0.5
1,447,893 + MPMX20_01385 0.59 +0.2
1,447,895 - MPMX20_01385 0.59 -1.4
1,447,903 + MPMX20_01385 0.60 -0.8
1,447,903 + MPMX20_01385 0.60 -0.9
1,447,903 + MPMX20_01385 0.60 +1.4
1,447,911 - MPMX20_01385 0.61 -1.2
1,447,911 - MPMX20_01385 0.61 +0.2
1,447,926 + MPMX20_01385 0.62 -1.2
1,448,004 - MPMX20_01385 0.69 -0.9
1,448,183 - MPMX20_01385 0.87 -2.4
1,448,209 + MPMX20_01385 0.89 +0.3
1,448,223 + -0.1
1,448,278 + +0.1
1,448,345 + -0.3
1,448,502 + MPMX20_01386 0.17 -2.9
1,448,537 + MPMX20_01386 0.20 -1.3
1,448,537 - MPMX20_01386 0.20 -3.4
1,448,545 - MPMX20_01386 0.21 -3.2
1,448,570 - MPMX20_01386 0.23 -1.9
1,448,592 - MPMX20_01386 0.25 -4.4
1,448,635 + MPMX20_01386 0.30 -1.1
1,448,638 - MPMX20_01386 0.30 -1.9
1,448,662 + MPMX20_01386 0.32 -0.2
1,448,662 + MPMX20_01386 0.32 -0.6
1,448,664 + MPMX20_01386 0.33 +0.8
1,448,664 + MPMX20_01386 0.33 -0.2
1,448,665 - MPMX20_01386 0.33 -4.6
1,448,670 - MPMX20_01386 0.33 -1.2
1,448,670 - MPMX20_01386 0.33 -2.9
1,448,670 - MPMX20_01386 0.33 -3.2
1,448,746 + MPMX20_01386 0.41 +0.5
1,448,765 + MPMX20_01386 0.42 -0.6
1,448,790 + MPMX20_01386 0.45 -0.5
1,448,810 - MPMX20_01386 0.47 -0.4
1,448,812 + MPMX20_01386 0.47 -0.3
1,448,832 + MPMX20_01386 0.49 -1.5
1,448,868 + MPMX20_01386 0.53 -0.5
1,448,933 - MPMX20_01386 0.59 -2.9
1,449,089 + MPMX20_01386 0.74 -0.6
1,449,191 + MPMX20_01386 0.84 +0.4
1,449,243 + MPMX20_01386 0.89 +1.8
1,449,305 - -1.9

Or see this region's nucleotide sequence