Experiment: Amylose from potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02365 and HMPREF1058_RS02360 are separated by 186 nucleotides HMPREF1058_RS02360 and HMPREF1058_RS02355 are separated by 12 nucleotides
HMPREF1058_RS02365: HMPREF1058_RS02365 - DUF4981 domain-containing protein, at 211,399 to 214,629
_RS02365
HMPREF1058_RS02360: HMPREF1058_RS02360 - RagB/SusD family nutrient uptake outer membrane protein, at 214,816 to 216,633
_RS02360
HMPREF1058_RS02355: HMPREF1058_RS02355 - TonB-dependent receptor, at 216,646 to 219,738
_RS02355
Position (kb) 214
215
216
217 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 213.831 kb on - strand, within HMPREF1058_RS02365 at 213.842 kb on + strand, within HMPREF1058_RS02365 at 213.880 kb on - strand, within HMPREF1058_RS02365 at 213.979 kb on + strand, within HMPREF1058_RS02365 at 213.997 kb on + strand, within HMPREF1058_RS02365 at 214.095 kb on + strand, within HMPREF1058_RS02365 at 214.126 kb on - strand, within HMPREF1058_RS02365 at 214.128 kb on + strand, within HMPREF1058_RS02365 at 214.129 kb on - strand, within HMPREF1058_RS02365 at 214.132 kb on - strand, within HMPREF1058_RS02365 at 214.189 kb on + strand, within HMPREF1058_RS02365 at 214.191 kb on + strand, within HMPREF1058_RS02365 at 214.191 kb on + strand, within HMPREF1058_RS02365 at 214.193 kb on + strand, within HMPREF1058_RS02365 at 214.213 kb on + strand, within HMPREF1058_RS02365 at 214.214 kb on - strand, within HMPREF1058_RS02365 at 214.217 kb on + strand, within HMPREF1058_RS02365 at 214.218 kb on - strand, within HMPREF1058_RS02365 at 214.225 kb on + strand, within HMPREF1058_RS02365 at 214.225 kb on + strand, within HMPREF1058_RS02365 at 214.226 kb on - strand, within HMPREF1058_RS02365 at 214.250 kb on - strand, within HMPREF1058_RS02365 at 214.284 kb on + strand, within HMPREF1058_RS02365 at 214.355 kb on - strand at 214.394 kb on + strand at 214.551 kb on + strand at 214.552 kb on - strand at 214.612 kb on + strand at 214.624 kb on - strand at 214.632 kb on + strand at 214.632 kb on + strand at 214.632 kb on + strand at 214.633 kb on - strand at 214.633 kb on - strand at 214.633 kb on - strand at 214.633 kb on - strand at 214.672 kb on + strand at 214.700 kb on + strand at 214.801 kb on + strand at 214.861 kb on + strand at 215.009 kb on + strand, within HMPREF1058_RS02360 at 215.009 kb on + strand, within HMPREF1058_RS02360 at 215.187 kb on + strand, within HMPREF1058_RS02360 at 215.233 kb on + strand, within HMPREF1058_RS02360 at 215.353 kb on - strand, within HMPREF1058_RS02360 at 215.373 kb on - strand, within HMPREF1058_RS02360 at 215.373 kb on - strand, within HMPREF1058_RS02360 at 215.382 kb on + strand, within HMPREF1058_RS02360 at 215.505 kb on - strand, within HMPREF1058_RS02360 at 215.508 kb on - strand, within HMPREF1058_RS02360 at 215.508 kb on - strand, within HMPREF1058_RS02360 at 215.508 kb on - strand, within HMPREF1058_RS02360 at 215.555 kb on - strand, within HMPREF1058_RS02360 at 215.568 kb on - strand, within HMPREF1058_RS02360 at 215.568 kb on - strand, within HMPREF1058_RS02360 at 215.585 kb on + strand, within HMPREF1058_RS02360 at 215.586 kb on - strand, within HMPREF1058_RS02360 at 215.586 kb on - strand, within HMPREF1058_RS02360 at 215.592 kb on + strand, within HMPREF1058_RS02360 at 215.639 kb on + strand, within HMPREF1058_RS02360 at 215.663 kb on + strand, within HMPREF1058_RS02360 at 215.687 kb on + strand, within HMPREF1058_RS02360 at 215.721 kb on - strand, within HMPREF1058_RS02360 at 215.737 kb on - strand, within HMPREF1058_RS02360 at 215.737 kb on - strand, within HMPREF1058_RS02360 at 215.738 kb on + strand, within HMPREF1058_RS02360 at 215.818 kb on + strand, within HMPREF1058_RS02360 at 215.819 kb on - strand, within HMPREF1058_RS02360 at 215.867 kb on + strand, within HMPREF1058_RS02360 at 215.950 kb on - strand, within HMPREF1058_RS02360 at 215.952 kb on - strand, within HMPREF1058_RS02360 at 215.984 kb on - strand, within HMPREF1058_RS02360 at 216.034 kb on - strand, within HMPREF1058_RS02360 at 216.078 kb on + strand, within HMPREF1058_RS02360 at 216.146 kb on + strand, within HMPREF1058_RS02360 at 216.147 kb on - strand, within HMPREF1058_RS02360 at 216.174 kb on + strand, within HMPREF1058_RS02360 at 216.175 kb on - strand, within HMPREF1058_RS02360 at 216.176 kb on + strand, within HMPREF1058_RS02360 at 216.177 kb on - strand, within HMPREF1058_RS02360 at 216.177 kb on - strand, within HMPREF1058_RS02360 at 216.178 kb on + strand, within HMPREF1058_RS02360 at 216.178 kb on + strand, within HMPREF1058_RS02360 at 216.276 kb on - strand, within HMPREF1058_RS02360 at 216.277 kb on - strand, within HMPREF1058_RS02360 at 216.290 kb on - strand, within HMPREF1058_RS02360 at 216.291 kb on + strand, within HMPREF1058_RS02360 at 216.434 kb on - strand, within HMPREF1058_RS02360 at 216.434 kb on - strand, within HMPREF1058_RS02360 at 216.437 kb on + strand, within HMPREF1058_RS02360 at 216.438 kb on - strand, within HMPREF1058_RS02360 at 216.464 kb on - strand at 216.609 kb on + strand at 216.610 kb on - strand at 216.671 kb on - strand at 216.674 kb on + strand at 216.674 kb on + strand at 216.675 kb on - strand at 216.675 kb on - strand at 216.737 kb on + strand at 216.738 kb on - strand at 216.780 kb on - strand at 216.780 kb on - strand at 216.803 kb on - strand at 216.878 kb on + strand at 216.879 kb on - strand at 216.916 kb on - strand at 216.916 kb on - strand at 216.918 kb on + strand at 216.981 kb on + strand, within HMPREF1058_RS02355 at 217.089 kb on + strand, within HMPREF1058_RS02355 at 217.090 kb on - strand, within HMPREF1058_RS02355 at 217.095 kb on + strand, within HMPREF1058_RS02355 at 217.167 kb on - strand, within HMPREF1058_RS02355 at 217.278 kb on - strand, within HMPREF1058_RS02355 at 217.278 kb on - strand, within HMPREF1058_RS02355 at 217.310 kb on + strand, within HMPREF1058_RS02355 at 217.311 kb on - strand, within HMPREF1058_RS02355 at 217.425 kb on + strand, within HMPREF1058_RS02355 at 217.537 kb on - strand, within HMPREF1058_RS02355 at 217.621 kb on - strand, within HMPREF1058_RS02355 at 217.621 kb on - strand, within HMPREF1058_RS02355
Per-strain Table
Position Strand Gene LocusTag Fraction Amylose from potato 2.5 mg/ml (C) remove 213,831 - HMPREF1058_RS02365 0.75 -2.1 213,842 + HMPREF1058_RS02365 0.76 +1.8 213,880 - HMPREF1058_RS02365 0.77 +0.6 213,979 + HMPREF1058_RS02365 0.80 +1.2 213,997 + HMPREF1058_RS02365 0.80 +1.3 214,095 + HMPREF1058_RS02365 0.83 -0.2 214,126 - HMPREF1058_RS02365 0.84 -1.4 214,128 + HMPREF1058_RS02365 0.84 -1.7 214,129 - HMPREF1058_RS02365 0.84 -1.7 214,132 - HMPREF1058_RS02365 0.85 -0.4 214,189 + HMPREF1058_RS02365 0.86 -1.5 214,191 + HMPREF1058_RS02365 0.86 +0.5 214,191 + HMPREF1058_RS02365 0.86 +0.2 214,193 + HMPREF1058_RS02365 0.86 -0.5 214,213 + HMPREF1058_RS02365 0.87 +2.8 214,214 - HMPREF1058_RS02365 0.87 -0.6 214,217 + HMPREF1058_RS02365 0.87 +1.8 214,218 - HMPREF1058_RS02365 0.87 -3.4 214,225 + HMPREF1058_RS02365 0.87 +0.7 214,225 + HMPREF1058_RS02365 0.87 +0.5 214,226 - HMPREF1058_RS02365 0.87 -0.1 214,250 - HMPREF1058_RS02365 0.88 +2.8 214,284 + HMPREF1058_RS02365 0.89 -0.8 214,355 - -2.4 214,394 + +0.5 214,551 + +0.5 214,552 - +1.2 214,612 + +1.2 214,624 - -0.3 214,632 + +0.3 214,632 + -0.1 214,632 + -2.4 214,633 - +0.7 214,633 - +0.8 214,633 - +0.6 214,633 - -0.8 214,672 + -0.0 214,700 + -0.5 214,801 + -1.9 214,861 + -0.7 215,009 + HMPREF1058_RS02360 0.11 +0.8 215,009 + HMPREF1058_RS02360 0.11 -0.5 215,187 + HMPREF1058_RS02360 0.20 -1.2 215,233 + HMPREF1058_RS02360 0.23 +0.7 215,353 - HMPREF1058_RS02360 0.30 -0.0 215,373 - HMPREF1058_RS02360 0.31 -4.1 215,373 - HMPREF1058_RS02360 0.31 +0.6 215,382 + HMPREF1058_RS02360 0.31 -1.2 215,505 - HMPREF1058_RS02360 0.38 -1.8 215,508 - HMPREF1058_RS02360 0.38 +1.8 215,508 - HMPREF1058_RS02360 0.38 -1.0 215,508 - HMPREF1058_RS02360 0.38 -2.7 215,555 - HMPREF1058_RS02360 0.41 -1.8 215,568 - HMPREF1058_RS02360 0.41 -0.2 215,568 - HMPREF1058_RS02360 0.41 -3.4 215,585 + HMPREF1058_RS02360 0.42 +0.2 215,586 - HMPREF1058_RS02360 0.42 +1.0 215,586 - HMPREF1058_RS02360 0.42 -2.2 215,592 + HMPREF1058_RS02360 0.43 -2.1 215,639 + HMPREF1058_RS02360 0.45 -1.9 215,663 + HMPREF1058_RS02360 0.47 -2.3 215,687 + HMPREF1058_RS02360 0.48 -0.1 215,721 - HMPREF1058_RS02360 0.50 +1.2 215,737 - HMPREF1058_RS02360 0.51 -0.0 215,737 - HMPREF1058_RS02360 0.51 -0.2 215,738 + HMPREF1058_RS02360 0.51 +1.2 215,818 + HMPREF1058_RS02360 0.55 -2.3 215,819 - HMPREF1058_RS02360 0.55 +0.1 215,867 + HMPREF1058_RS02360 0.58 +0.1 215,950 - HMPREF1058_RS02360 0.62 +0.0 215,952 - HMPREF1058_RS02360 0.62 +0.5 215,984 - HMPREF1058_RS02360 0.64 -2.0 216,034 - HMPREF1058_RS02360 0.67 -0.4 216,078 + HMPREF1058_RS02360 0.69 -1.7 216,146 + HMPREF1058_RS02360 0.73 +0.7 216,147 - HMPREF1058_RS02360 0.73 -0.4 216,174 + HMPREF1058_RS02360 0.75 -1.7 216,175 - HMPREF1058_RS02360 0.75 -1.2 216,176 + HMPREF1058_RS02360 0.75 -0.5 216,177 - HMPREF1058_RS02360 0.75 -0.8 216,177 - HMPREF1058_RS02360 0.75 -2.9 216,178 + HMPREF1058_RS02360 0.75 +2.3 216,178 + HMPREF1058_RS02360 0.75 -1.8 216,276 - HMPREF1058_RS02360 0.80 -2.0 216,277 - HMPREF1058_RS02360 0.80 +1.3 216,290 - HMPREF1058_RS02360 0.81 -0.4 216,291 + HMPREF1058_RS02360 0.81 -1.1 216,434 - HMPREF1058_RS02360 0.89 -0.7 216,434 - HMPREF1058_RS02360 0.89 -1.4 216,437 + HMPREF1058_RS02360 0.89 +0.2 216,438 - HMPREF1058_RS02360 0.89 -0.8 216,464 - +0.5 216,609 + -0.6 216,610 - -1.2 216,671 - -0.2 216,674 + +1.4 216,674 + +1.6 216,675 - +4.7 216,675 - +0.6 216,737 + -2.4 216,738 - -2.0 216,780 - -0.4 216,780 - -0.6 216,803 - -2.8 216,878 + -1.1 216,879 - -1.0 216,916 - +1.0 216,916 - -0.9 216,918 + -1.4 216,981 + HMPREF1058_RS02355 0.11 -0.4 217,089 + HMPREF1058_RS02355 0.14 +1.5 217,090 - HMPREF1058_RS02355 0.14 +0.8 217,095 + HMPREF1058_RS02355 0.15 -0.8 217,167 - HMPREF1058_RS02355 0.17 -1.4 217,278 - HMPREF1058_RS02355 0.20 -0.2 217,278 - HMPREF1058_RS02355 0.20 -0.1 217,310 + HMPREF1058_RS02355 0.21 -1.1 217,311 - HMPREF1058_RS02355 0.22 -1.0 217,425 + HMPREF1058_RS02355 0.25 -0.8 217,537 - HMPREF1058_RS02355 0.29 -1.7 217,621 - HMPREF1058_RS02355 0.32 -1.6 217,621 - HMPREF1058_RS02355 0.32 +0.5
Or see this region's nucleotide sequence