Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00270

Experiment: Amylose from potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylose from potato 2.5 mg/ml (C)
16,440	-		HMPREF1058_RS00275	0.44	-1.4
16,442	-		HMPREF1058_RS00275	0.44	-0.5
16,474	+		HMPREF1058_RS00275	0.46	-1.0
16,493	+		HMPREF1058_RS00275	0.47	-0.9
16,504	+		HMPREF1058_RS00275	0.48	+3.2
16,550	-		HMPREF1058_RS00275	0.51	-0.1
16,555	-		HMPREF1058_RS00275	0.51	-1.4
16,681	+		HMPREF1058_RS00275	0.58	+0.5
16,723	+		HMPREF1058_RS00275	0.61	-0.6
16,771	+		HMPREF1058_RS00275	0.64	+0.5
16,771	+		HMPREF1058_RS00275	0.64	+0.2
16,771	+		HMPREF1058_RS00275	0.64	-0.1
16,787	-		HMPREF1058_RS00275	0.65	-1.3
16,806	+		HMPREF1058_RS00275	0.66	-1.3
16,807	-		HMPREF1058_RS00275	0.66	+0.8
16,807	-		HMPREF1058_RS00275	0.66	+1.0
16,807	-		HMPREF1058_RS00275	0.66	-0.3
16,818	+		HMPREF1058_RS00275	0.66	-0.2
16,818	+		HMPREF1058_RS00275	0.66	-3.6
16,822	+		HMPREF1058_RS00275	0.67	+0.2
16,879	-		HMPREF1058_RS00275	0.70	+0.8
16,879	-		HMPREF1058_RS00275	0.70	+0.8
16,888	-		HMPREF1058_RS00275	0.71	-1.2
16,909	+		HMPREF1058_RS00275	0.72	-0.5
16,917	+		HMPREF1058_RS00275	0.72	-1.2
16,940	+		HMPREF1058_RS00275	0.74	-1.0
16,941	-		HMPREF1058_RS00275	0.74	+0.1
16,941	-		HMPREF1058_RS00275	0.74	-1.4
16,962	-		HMPREF1058_RS00275	0.75	+0.9
17,021	+		HMPREF1058_RS00275	0.78	-2.8
17,022	-		HMPREF1058_RS00275	0.78	-1.4
17,064	-		HMPREF1058_RS00275	0.81	+0.5
17,140	+		HMPREF1058_RS00275	0.85	+0.4
17,178	+		HMPREF1058_RS00275	0.88	-1.3
17,178	+		HMPREF1058_RS00275	0.88	+0.0
17,198	+		HMPREF1058_RS00275	0.89	+1.7
17,231	-				-2.7
17,271	+				-0.0
17,275	+				-1.5
17,275	+				-0.1
17,275	+				-3.8
17,276	-				-2.4
17,276	-				+0.0
17,276	-				-2.2
17,278	+				-1.0
17,348	+				+2.3
17,378	-				-1.8
17,379	+				-2.1
17,380	-				+0.3
17,380	-				+1.3
17,507	+		HMPREF1058_RS00270	0.26	-1.6
17,578	-		HMPREF1058_RS00270	0.44	-2.1
17,590	-		HMPREF1058_RS00270	0.47	-0.4
17,590	-		HMPREF1058_RS00270	0.47	-2.2
17,591	+		HMPREF1058_RS00270	0.48	-0.6
17,591	+		HMPREF1058_RS00270	0.48	+2.8
17,592	-		HMPREF1058_RS00270	0.48	-3.8
17,593	+		HMPREF1058_RS00270	0.48	-0.2
17,593	+		HMPREF1058_RS00270	0.48	-2.3
17,594	-		HMPREF1058_RS00270	0.48	-0.3
17,596	-		HMPREF1058_RS00270	0.49	+1.0
17,771	-				-2.2
17,777	+				-2.0
17,778	-				-1.4
17,827	+				-0.2
17,860	-				+0.5
17,860	-				-0.7
17,932	-				-0.4
17,951	+				-3.6
18,036	+				-0.2
18,059	+				-0.9
18,102	-		HMPREF1058_RS00265	0.12	-2.6
18,136	+		HMPREF1058_RS00265	0.14	+1.6
18,232	-		HMPREF1058_RS00265	0.19	-1.1
18,247	-		HMPREF1058_RS00265	0.20	-1.0
18,257	+		HMPREF1058_RS00265	0.20	+0.1
18,257	+		HMPREF1058_RS00265	0.20	-0.2
18,258	-		HMPREF1058_RS00265	0.20	-1.4
18,313	+		HMPREF1058_RS00265	0.23	-1.4
18,314	-		HMPREF1058_RS00265	0.23	-4.0
18,314	-		HMPREF1058_RS00265	0.23	+1.4
18,314	-		HMPREF1058_RS00265	0.23	+1.2
18,476	+		HMPREF1058_RS00265	0.32	+1.5
18,494	+		HMPREF1058_RS00265	0.33	+1.0
18,517	+		HMPREF1058_RS00265	0.34	+1.1
18,522	+		HMPREF1058_RS00265	0.35	+0.4
18,526	-		HMPREF1058_RS00265	0.35	-1.9
18,543	+		HMPREF1058_RS00265	0.36	+1.8
18,549	+		HMPREF1058_RS00265	0.36	-0.3
18,656	+		HMPREF1058_RS00265	0.42	-0.1
18,725	+		HMPREF1058_RS00265	0.45	-0.4
18,736	+		HMPREF1058_RS00265	0.46	-2.0
18,738	+		HMPREF1058_RS00265	0.46	-0.5
18,738	+		HMPREF1058_RS00265	0.46	-1.1
18,738	+		HMPREF1058_RS00265	0.46	-1.5
18,739	-		HMPREF1058_RS00265	0.46	-0.2
18,739	-		HMPREF1058_RS00265	0.46	-2.2