Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04644

Experiment: AMD2036 coinoculated with AMD2587 on RCH2 to a starting OD of 0.01

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04642 and MPMX20_04643 are separated by 14 nucleotidesMPMX20_04643 and MPMX20_04644 are separated by 84 nucleotidesMPMX20_04644 and MPMX20_04645 are separated by 163 nucleotides MPMX20_04642: MPMX20_04642 - Phosphate import ATP-binding protein PstB, at 4,862,860 to 4,863,633 _04642 MPMX20_04643: MPMX20_04643 - Phosphate-specific transport system accessory protein PhoU, at 4,863,648 to 4,864,373 _04643 MPMX20_04644: MPMX20_04644 - 6-phosphogluconate phosphatase, at 4,864,458 to 4,865,123 _04644 MPMX20_04645: MPMX20_04645 - Adenine permease AdeP, at 4,865,287 to 4,866,627 _04645 Position (kb) 4864 4865 4866Strain fitness (log2 ratio) -2 -1 0 1 2at 4863.686 kb on + strandat 4863.686 kb on + strandat 4863.686 kb on + strandat 4863.686 kb on + strandat 4863.686 kb on + strandat 4864.529 kb on - strand, within MPMX20_04644at 4864.672 kb on + strand, within MPMX20_04644at 4864.773 kb on + strand, within MPMX20_04644at 4864.805 kb on - strand, within MPMX20_04644at 4864.820 kb on - strand, within MPMX20_04644at 4864.870 kb on + strand, within MPMX20_04644at 4864.936 kb on - strand, within MPMX20_04644at 4864.956 kb on + strand, within MPMX20_04644at 4864.981 kb on + strand, within MPMX20_04644at 4864.981 kb on + strand, within MPMX20_04644at 4864.989 kb on - strand, within MPMX20_04644at 4864.989 kb on - strand, within MPMX20_04644at 4864.989 kb on - strand, within MPMX20_04644at 4865.013 kb on - strand, within MPMX20_04644at 4865.067 kb on - strandat 4865.074 kb on - strandat 4865.079 kb on - strandat 4865.081 kb on + strandat 4865.294 kb on + strandat 4865.308 kb on + strandat 4865.325 kb on + strandat 4865.325 kb on + strandat 4865.325 kb on + strandat 4865.328 kb on - strandat 4865.342 kb on + strandat 4865.386 kb on - strandat 4865.423 kb on - strand, within MPMX20_04645at 4865.506 kb on - strand, within MPMX20_04645at 4865.513 kb on + strand, within MPMX20_04645at 4865.516 kb on - strand, within MPMX20_04645at 4865.539 kb on - strand, within MPMX20_04645at 4865.741 kb on + strand, within MPMX20_04645at 4865.749 kb on - strand, within MPMX20_04645at 4865.805 kb on - strand, within MPMX20_04645at 4865.833 kb on - strand, within MPMX20_04645at 4865.840 kb on + strand, within MPMX20_04645at 4865.913 kb on + strand, within MPMX20_04645at 4865.950 kb on - strand, within MPMX20_04645at 4865.959 kb on + strand, within MPMX20_04645at 4865.964 kb on + strand, within MPMX20_04645at 4865.969 kb on + strand, within MPMX20_04645at 4866.073 kb on - strand, within MPMX20_04645

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on RCH2 to a starting OD of 0.01
remove
4,863,686 + +0.1
4,863,686 + -1.3
4,863,686 + -1.1
4,863,686 + -0.6
4,863,686 + +0.1
4,864,529 - MPMX20_04644 0.11 -2.5
4,864,672 + MPMX20_04644 0.32 +0.2
4,864,773 + MPMX20_04644 0.47 +0.6
4,864,805 - MPMX20_04644 0.52 -2.4
4,864,820 - MPMX20_04644 0.54 +0.3
4,864,870 + MPMX20_04644 0.62 -0.1
4,864,936 - MPMX20_04644 0.72 -0.6
4,864,956 + MPMX20_04644 0.75 +1.6
4,864,981 + MPMX20_04644 0.79 -0.0
4,864,981 + MPMX20_04644 0.79 -1.0
4,864,989 - MPMX20_04644 0.80 +0.7
4,864,989 - MPMX20_04644 0.80 -0.4
4,864,989 - MPMX20_04644 0.80 -0.8
4,865,013 - MPMX20_04644 0.83 -0.0
4,865,067 - -1.1
4,865,074 - -0.9
4,865,079 - +0.2
4,865,081 + +1.9
4,865,294 + +1.9
4,865,308 + -0.4
4,865,325 + -1.0
4,865,325 + +0.8
4,865,325 + +0.0
4,865,328 - -0.8
4,865,342 + +1.4
4,865,386 - +0.1
4,865,423 - MPMX20_04645 0.10 -1.8
4,865,506 - MPMX20_04645 0.16 -0.7
4,865,513 + MPMX20_04645 0.17 -0.7
4,865,516 - MPMX20_04645 0.17 -1.1
4,865,539 - MPMX20_04645 0.19 -1.6
4,865,741 + MPMX20_04645 0.34 +0.8
4,865,749 - MPMX20_04645 0.34 -1.2
4,865,805 - MPMX20_04645 0.39 +0.7
4,865,833 - MPMX20_04645 0.41 -0.3
4,865,840 + MPMX20_04645 0.41 +1.4
4,865,913 + MPMX20_04645 0.47 -0.3
4,865,950 - MPMX20_04645 0.49 +0.0
4,865,959 + MPMX20_04645 0.50 +0.9
4,865,964 + MPMX20_04645 0.50 +0.3
4,865,969 + MPMX20_04645 0.51 +1.4
4,866,073 - MPMX20_04645 0.59 -1.1

Or see this region's nucleotide sequence