Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00190

Experiment: AMD2036 coinoculated with AMD2587 on RCH2 to a starting OD of 0.01

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00188 and MPMX20_00189 are separated by 91 nucleotidesMPMX20_00189 and MPMX20_00190 are separated by 620 nucleotidesMPMX20_00190 and MPMX20_00191 are separated by 161 nucleotides MPMX20_00188: MPMX20_00188 - Kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 195,895 to 197,589 _00188 MPMX20_00189: MPMX20_00189 - tRNA-Pro, at 197,681 to 197,757 _00189 MPMX20_00190: MPMX20_00190 - Periplasmic dipeptide transport protein, at 198,378 to 199,985 _00190 MPMX20_00191: MPMX20_00191 - Dipeptide transport system permease protein DppB, at 200,147 to 201,166 _00191 Position (kb) 198 199 200Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 197.421 kb on + strandat 197.422 kb on + strandat 197.423 kb on + strandat 197.471 kb on + strandat 197.476 kb on - strandat 197.479 kb on - strandat 197.481 kb on + strandat 197.491 kb on + strandat 197.499 kb on - strandat 197.505 kb on + strandat 197.505 kb on + strandat 197.505 kb on + strandat 197.506 kb on + strandat 197.513 kb on - strandat 197.514 kb on - strandat 197.514 kb on - strandat 197.514 kb on - strandat 197.514 kb on - strandat 197.579 kb on - strandat 197.579 kb on - strandat 197.597 kb on + strandat 197.652 kb on + strandat 197.660 kb on - strandat 197.843 kb on + strandat 197.929 kb on + strandat 197.984 kb on + strandat 197.989 kb on + strandat 198.028 kb on + strandat 198.150 kb on - strandat 198.154 kb on + strandat 198.154 kb on + strandat 198.154 kb on + strandat 198.154 kb on + strandat 198.154 kb on + strandat 198.154 kb on + strandat 198.162 kb on - strandat 198.173 kb on + strandat 198.181 kb on - strandat 198.254 kb on - strandat 198.296 kb on + strandat 198.301 kb on + strandat 198.337 kb on + strandat 198.345 kb on - strandat 198.345 kb on - strandat 198.345 kb on - strandat 198.353 kb on - strandat 198.363 kb on + strandat 198.397 kb on + strandat 198.412 kb on + strandat 198.415 kb on - strandat 198.415 kb on - strandat 198.420 kb on - strandat 198.425 kb on - strandat 198.426 kb on - strandat 198.426 kb on - strandat 198.440 kb on - strandat 198.478 kb on + strandat 198.486 kb on - strandat 198.512 kb on + strandat 198.515 kb on + strandat 198.523 kb on - strandat 198.544 kb on + strand, within MPMX20_00190at 198.544 kb on + strand, within MPMX20_00190at 198.552 kb on - strand, within MPMX20_00190at 198.552 kb on - strand, within MPMX20_00190at 198.555 kb on + strand, within MPMX20_00190at 198.563 kb on - strand, within MPMX20_00190at 198.638 kb on + strand, within MPMX20_00190at 198.644 kb on + strand, within MPMX20_00190at 198.644 kb on + strand, within MPMX20_00190at 198.644 kb on + strand, within MPMX20_00190at 198.644 kb on + strand, within MPMX20_00190at 198.644 kb on + strand, within MPMX20_00190at 198.644 kb on + strand, within MPMX20_00190at 198.646 kb on - strand, within MPMX20_00190at 198.652 kb on + strand, within MPMX20_00190at 198.652 kb on - strand, within MPMX20_00190at 198.652 kb on - strand, within MPMX20_00190at 198.652 kb on - strand, within MPMX20_00190at 198.652 kb on - strand, within MPMX20_00190at 198.652 kb on - strand, within MPMX20_00190at 198.652 kb on - strand, within MPMX20_00190at 198.652 kb on - strand, within MPMX20_00190at 198.652 kb on - strand, within MPMX20_00190at 198.653 kb on - strand, within MPMX20_00190at 198.660 kb on - strand, within MPMX20_00190at 198.662 kb on + strand, within MPMX20_00190at 198.734 kb on + strand, within MPMX20_00190at 198.793 kb on + strand, within MPMX20_00190at 198.801 kb on - strand, within MPMX20_00190at 198.816 kb on + strand, within MPMX20_00190at 198.816 kb on + strand, within MPMX20_00190at 198.899 kb on - strand, within MPMX20_00190at 198.906 kb on + strand, within MPMX20_00190at 198.933 kb on - strand, within MPMX20_00190at 198.982 kb on + strand, within MPMX20_00190at 199.003 kb on + strand, within MPMX20_00190at 199.003 kb on + strand, within MPMX20_00190at 199.038 kb on - strand, within MPMX20_00190at 199.060 kb on - strand, within MPMX20_00190at 199.111 kb on - strand, within MPMX20_00190at 199.117 kb on + strand, within MPMX20_00190at 199.174 kb on - strand, within MPMX20_00190at 199.242 kb on + strand, within MPMX20_00190at 199.318 kb on + strand, within MPMX20_00190at 199.319 kb on - strand, within MPMX20_00190at 199.324 kb on - strand, within MPMX20_00190at 199.324 kb on - strand, within MPMX20_00190at 199.428 kb on - strand, within MPMX20_00190at 199.460 kb on - strand, within MPMX20_00190at 199.471 kb on + strand, within MPMX20_00190at 199.471 kb on - strand, within MPMX20_00190at 199.476 kb on + strand, within MPMX20_00190at 199.476 kb on + strand, within MPMX20_00190at 199.484 kb on - strand, within MPMX20_00190at 199.510 kb on - strand, within MPMX20_00190at 199.510 kb on - strand, within MPMX20_00190at 199.513 kb on + strand, within MPMX20_00190at 199.521 kb on - strand, within MPMX20_00190at 199.521 kb on - strand, within MPMX20_00190at 199.534 kb on + strand, within MPMX20_00190at 199.576 kb on - strand, within MPMX20_00190at 199.584 kb on - strand, within MPMX20_00190at 199.685 kb on + strand, within MPMX20_00190at 199.698 kb on + strand, within MPMX20_00190at 199.713 kb on + strand, within MPMX20_00190at 199.718 kb on + strand, within MPMX20_00190at 199.726 kb on - strand, within MPMX20_00190at 199.726 kb on - strand, within MPMX20_00190at 199.726 kb on - strand, within MPMX20_00190at 199.790 kb on - strand, within MPMX20_00190at 199.852 kb on - strandat 199.852 kb on - strandat 199.880 kb on + strandat 199.950 kb on + strandat 199.994 kb on + strandat 200.007 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.019 kb on + strandat 200.027 kb on - strandat 200.027 kb on - strandat 200.027 kb on - strandat 200.027 kb on - strandat 200.027 kb on - strandat 200.027 kb on - strandat 200.027 kb on - strandat 200.027 kb on - strandat 200.052 kb on + strandat 200.052 kb on + strandat 200.052 kb on + strandat 200.052 kb on + strandat 200.052 kb on + strandat 200.052 kb on + strandat 200.052 kb on + strandat 200.060 kb on - strandat 200.060 kb on - strandat 200.060 kb on - strandat 200.060 kb on - strandat 200.064 kb on + strandat 200.070 kb on - strandat 200.097 kb on + strandat 200.105 kb on - strandat 200.121 kb on - strandat 200.169 kb on + strandat 200.177 kb on - strandat 200.299 kb on + strand, within MPMX20_00191at 200.310 kb on + strand, within MPMX20_00191at 200.315 kb on + strand, within MPMX20_00191at 200.318 kb on - strand, within MPMX20_00191at 200.328 kb on - strand, within MPMX20_00191at 200.418 kb on + strand, within MPMX20_00191at 200.485 kb on + strand, within MPMX20_00191at 200.493 kb on - strand, within MPMX20_00191at 200.508 kb on - strand, within MPMX20_00191at 200.563 kb on + strand, within MPMX20_00191at 200.610 kb on - strand, within MPMX20_00191at 200.631 kb on - strand, within MPMX20_00191at 200.725 kb on - strand, within MPMX20_00191at 200.731 kb on + strand, within MPMX20_00191at 200.757 kb on + strand, within MPMX20_00191at 200.784 kb on + strand, within MPMX20_00191at 200.818 kb on - strand, within MPMX20_00191at 200.831 kb on - strand, within MPMX20_00191at 200.869 kb on + strand, within MPMX20_00191at 200.876 kb on + strand, within MPMX20_00191at 200.884 kb on - strand, within MPMX20_00191at 200.901 kb on - strand, within MPMX20_00191at 200.914 kb on + strand, within MPMX20_00191at 200.914 kb on + strand, within MPMX20_00191at 200.914 kb on + strand, within MPMX20_00191at 200.919 kb on + strand, within MPMX20_00191at 200.922 kb on - strand, within MPMX20_00191at 200.956 kb on + strand, within MPMX20_00191

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on RCH2 to a starting OD of 0.01
remove
197,421 + -1.1
197,422 + +2.1
197,423 + +0.5
197,471 + -0.2
197,476 - -0.4
197,479 - +0.6
197,481 + +2.0
197,491 + -0.6
197,499 - -0.2
197,505 + +0.7
197,505 + +1.6
197,505 + -1.1
197,506 + +0.6
197,513 - +0.0
197,514 - -0.4
197,514 - +0.8
197,514 - +0.1
197,514 - -1.5
197,579 - +0.6
197,579 - -0.7
197,597 + +1.0
197,652 + +0.5
197,660 - -1.2
197,843 + -2.0
197,929 + +0.1
197,984 + +0.1
197,989 + -0.4
198,028 + +0.9
198,150 - +0.5
198,154 + -1.4
198,154 + -0.3
198,154 + -0.2
198,154 + +0.3
198,154 + -1.8
198,154 + +0.7
198,162 - +1.0
198,173 + +1.0
198,181 - +0.2
198,254 - +0.1
198,296 + -0.9
198,301 + +0.9
198,337 + -1.7
198,345 - -0.0
198,345 - -0.4
198,345 - -2.2
198,353 - +0.6
198,363 + +0.4
198,397 + -1.4
198,412 + +0.1
198,415 - +1.2
198,415 - +1.6
198,420 - -0.7
198,425 - -3.0
198,426 - -0.6
198,426 - -0.7
198,440 - -0.2
198,478 + -0.8
198,486 - +1.3
198,512 + +1.2
198,515 + +0.5
198,523 - -2.7
198,544 + MPMX20_00190 0.10 -1.1
198,544 + MPMX20_00190 0.10 +0.9
198,552 - MPMX20_00190 0.11 +1.1
198,552 - MPMX20_00190 0.11 -0.0
198,555 + MPMX20_00190 0.11 +0.9
198,563 - MPMX20_00190 0.12 -1.1
198,638 + MPMX20_00190 0.16 +0.1
198,644 + MPMX20_00190 0.17 -2.3
198,644 + MPMX20_00190 0.17 +0.5
198,644 + MPMX20_00190 0.17 -1.1
198,644 + MPMX20_00190 0.17 +1.0
198,644 + MPMX20_00190 0.17 +0.5
198,644 + MPMX20_00190 0.17 +0.6
198,646 - MPMX20_00190 0.17 +1.9
198,652 + MPMX20_00190 0.17 +3.0
198,652 - MPMX20_00190 0.17 +0.3
198,652 - MPMX20_00190 0.17 +1.6
198,652 - MPMX20_00190 0.17 +1.4
198,652 - MPMX20_00190 0.17 -1.2
198,652 - MPMX20_00190 0.17 -0.8
198,652 - MPMX20_00190 0.17 +2.2
198,652 - MPMX20_00190 0.17 -0.8
198,652 - MPMX20_00190 0.17 -1.0
198,653 - MPMX20_00190 0.17 -0.4
198,660 - MPMX20_00190 0.18 +0.1
198,662 + MPMX20_00190 0.18 -0.6
198,734 + MPMX20_00190 0.22 +1.0
198,793 + MPMX20_00190 0.26 -0.7
198,801 - MPMX20_00190 0.26 -1.0
198,816 + MPMX20_00190 0.27 +0.8
198,816 + MPMX20_00190 0.27 -1.5
198,899 - MPMX20_00190 0.32 +0.8
198,906 + MPMX20_00190 0.33 -0.2
198,933 - MPMX20_00190 0.35 -1.0
198,982 + MPMX20_00190 0.38 +0.5
199,003 + MPMX20_00190 0.39 -2.1
199,003 + MPMX20_00190 0.39 -0.5
199,038 - MPMX20_00190 0.41 -0.0
199,060 - MPMX20_00190 0.42 -0.6
199,111 - MPMX20_00190 0.46 +1.1
199,117 + MPMX20_00190 0.46 -0.0
199,174 - MPMX20_00190 0.50 -0.7
199,242 + MPMX20_00190 0.54 -0.9
199,318 + MPMX20_00190 0.58 -0.3
199,319 - MPMX20_00190 0.59 -0.0
199,324 - MPMX20_00190 0.59 +0.3
199,324 - MPMX20_00190 0.59 +0.0
199,428 - MPMX20_00190 0.65 -0.8
199,460 - MPMX20_00190 0.67 -1.0
199,471 + MPMX20_00190 0.68 -2.6
199,471 - MPMX20_00190 0.68 -1.1
199,476 + MPMX20_00190 0.68 -2.8
199,476 + MPMX20_00190 0.68 +1.2
199,484 - MPMX20_00190 0.69 -0.5
199,510 - MPMX20_00190 0.70 +0.7
199,510 - MPMX20_00190 0.70 -1.6
199,513 + MPMX20_00190 0.71 +1.8
199,521 - MPMX20_00190 0.71 -0.6
199,521 - MPMX20_00190 0.71 -1.8
199,534 + MPMX20_00190 0.72 +0.6
199,576 - MPMX20_00190 0.75 -1.8
199,584 - MPMX20_00190 0.75 -0.5
199,685 + MPMX20_00190 0.81 -0.6
199,698 + MPMX20_00190 0.82 +0.5
199,713 + MPMX20_00190 0.83 -2.7
199,718 + MPMX20_00190 0.83 +0.8
199,726 - MPMX20_00190 0.84 -0.6
199,726 - MPMX20_00190 0.84 +0.1
199,726 - MPMX20_00190 0.84 -0.6
199,790 - MPMX20_00190 0.88 +0.6
199,852 - -0.5
199,852 - -2.1
199,880 + -0.0
199,950 + -0.4
199,994 + +0.6
200,007 + +0.5
200,019 + +0.8
200,019 + -1.0
200,019 + +0.2
200,019 + +0.2
200,019 + +0.1
200,019 + +0.9
200,019 + +0.5
200,019 + -0.4
200,019 + -2.3
200,019 + -1.7
200,019 + -0.7
200,019 + -0.6
200,019 + -0.4
200,019 + -0.2
200,019 + -0.8
200,019 + +0.5
200,019 + +0.2
200,027 - -1.8
200,027 - +0.8
200,027 - -0.4
200,027 - -0.3
200,027 - -0.1
200,027 - -1.4
200,027 - -1.2
200,027 - -0.2
200,052 + +0.2
200,052 + -1.5
200,052 + +0.2
200,052 + -0.1
200,052 + -0.1
200,052 + -1.2
200,052 + +0.0
200,060 - -2.1
200,060 - +1.1
200,060 - -0.1
200,060 - +0.1
200,064 + +0.5
200,070 - -0.2
200,097 + +0.6
200,105 - +0.8
200,121 - +1.4
200,169 + +0.9
200,177 - -0.6
200,299 + MPMX20_00191 0.15 -1.1
200,310 + MPMX20_00191 0.16 -1.4
200,315 + MPMX20_00191 0.16 +0.5
200,318 - MPMX20_00191 0.17 -0.9
200,328 - MPMX20_00191 0.18 -1.3
200,418 + MPMX20_00191 0.27 -0.6
200,485 + MPMX20_00191 0.33 +0.2
200,493 - MPMX20_00191 0.34 -1.3
200,508 - MPMX20_00191 0.35 -1.0
200,563 + MPMX20_00191 0.41 +0.8
200,610 - MPMX20_00191 0.45 -1.2
200,631 - MPMX20_00191 0.47 -1.0
200,725 - MPMX20_00191 0.57 +0.5
200,731 + MPMX20_00191 0.57 -0.6
200,757 + MPMX20_00191 0.60 +0.1
200,784 + MPMX20_00191 0.62 -1.8
200,818 - MPMX20_00191 0.66 -2.0
200,831 - MPMX20_00191 0.67 -0.0
200,869 + MPMX20_00191 0.71 +1.0
200,876 + MPMX20_00191 0.71 +1.0
200,884 - MPMX20_00191 0.72 +0.6
200,901 - MPMX20_00191 0.74 +2.2
200,914 + MPMX20_00191 0.75 +0.7
200,914 + MPMX20_00191 0.75 -0.1
200,914 + MPMX20_00191 0.75 -1.3
200,919 + MPMX20_00191 0.76 -2.6
200,922 - MPMX20_00191 0.76 -1.4
200,956 + MPMX20_00191 0.79 +0.9

Or see this region's nucleotide sequence