Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00094

Experiment: AMD2036 coinoculated with AMD2587 on RCH2 to a starting OD of 0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00092 and MPMX20_00093 are separated by 68 nucleotidesMPMX20_00093 and MPMX20_00094 are separated by 39 nucleotidesMPMX20_00094 and MPMX20_00095 are separated by 120 nucleotidesMPMX20_00095 and MPMX20_00096 overlap by 23 nucleotides MPMX20_00092: MPMX20_00092 - Ribonuclease PH, at 95,672 to 96,388 _00092 MPMX20_00093: MPMX20_00093 - Orotate phosphoribosyltransferase, at 96,457 to 97,098 _00093 MPMX20_00094: MPMX20_00094 - Nucleoid occlusion factor SlmA, at 97,138 to 97,734 _00094 MPMX20_00095: MPMX20_00095 - Deoxyuridine 5'-triphosphate nucleotidohydrolase, at 97,855 to 98,313 _00095 MPMX20_00096: MPMX20_00096 - Coenzyme A biosynthesis bifunctional protein CoaBC, at 98,291 to 99,505 _00096 Position (kb) 97 98Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 96.217 kb on - strand, within MPMX20_00092at 96.218 kb on + strand, within MPMX20_00092at 96.227 kb on + strand, within MPMX20_00092at 96.274 kb on + strand, within MPMX20_00092at 96.274 kb on + strand, within MPMX20_00092at 96.276 kb on - strand, within MPMX20_00092at 96.287 kb on + strand, within MPMX20_00092at 96.300 kb on + strand, within MPMX20_00092at 96.406 kb on - strandat 96.446 kb on + strandat 96.479 kb on - strandat 96.561 kb on - strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.573 kb on + strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.581 kb on - strand, within MPMX20_00093at 96.627 kb on + strand, within MPMX20_00093at 96.633 kb on - strand, within MPMX20_00093at 96.723 kb on + strand, within MPMX20_00093at 96.726 kb on - strand, within MPMX20_00093at 96.738 kb on + strand, within MPMX20_00093at 96.741 kb on - strand, within MPMX20_00093at 96.751 kb on - strand, within MPMX20_00093at 96.767 kb on - strand, within MPMX20_00093at 96.810 kb on - strand, within MPMX20_00093at 96.810 kb on - strand, within MPMX20_00093at 96.830 kb on - strand, within MPMX20_00093at 96.887 kb on + strand, within MPMX20_00093at 96.895 kb on - strand, within MPMX20_00093at 96.895 kb on - strand, within MPMX20_00093at 96.980 kb on + strand, within MPMX20_00093at 96.980 kb on + strand, within MPMX20_00093at 96.988 kb on - strand, within MPMX20_00093at 97.115 kb on + strandat 97.151 kb on + strandat 97.218 kb on - strand, within MPMX20_00094at 97.233 kb on - strand, within MPMX20_00094at 97.266 kb on + strand, within MPMX20_00094at 97.287 kb on - strand, within MPMX20_00094at 97.319 kb on + strand, within MPMX20_00094at 97.325 kb on - strand, within MPMX20_00094at 97.334 kb on + strand, within MPMX20_00094at 97.356 kb on + strand, within MPMX20_00094at 97.356 kb on + strand, within MPMX20_00094at 97.356 kb on + strand, within MPMX20_00094at 97.364 kb on - strand, within MPMX20_00094at 97.364 kb on - strand, within MPMX20_00094at 97.364 kb on - strand, within MPMX20_00094at 97.390 kb on + strand, within MPMX20_00094at 97.403 kb on - strand, within MPMX20_00094at 97.410 kb on + strand, within MPMX20_00094at 97.418 kb on - strand, within MPMX20_00094at 97.432 kb on + strand, within MPMX20_00094at 97.447 kb on - strand, within MPMX20_00094at 97.626 kb on + strand, within MPMX20_00094at 97.629 kb on + strand, within MPMX20_00094at 97.634 kb on - strand, within MPMX20_00094at 97.713 kb on - strandat 97.802 kb on - strandat 97.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on RCH2 to a starting OD of 0.01
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96,217 - MPMX20_00092 0.76 -0.4
96,218 + MPMX20_00092 0.76 +0.8
96,227 + MPMX20_00092 0.77 +1.0
96,274 + MPMX20_00092 0.84 -0.1
96,274 + MPMX20_00092 0.84 -0.4
96,276 - MPMX20_00092 0.84 -1.3
96,287 + MPMX20_00092 0.86 -1.0
96,300 + MPMX20_00092 0.88 -1.2
96,406 - +0.2
96,446 + -1.7
96,479 - -3.2
96,561 - MPMX20_00093 0.16 -2.2
96,573 + MPMX20_00093 0.18 -2.9
96,573 + MPMX20_00093 0.18 -1.4
96,573 + MPMX20_00093 0.18 -2.4
96,573 + MPMX20_00093 0.18 -1.8
96,573 + MPMX20_00093 0.18 -2.8
96,573 + MPMX20_00093 0.18 -0.8
96,573 + MPMX20_00093 0.18 -0.9
96,573 + MPMX20_00093 0.18 -1.4
96,573 + MPMX20_00093 0.18 -3.9
96,573 + MPMX20_00093 0.18 -1.1
96,573 + MPMX20_00093 0.18 -3.6
96,581 - MPMX20_00093 0.19 -2.0
96,581 - MPMX20_00093 0.19 -2.1
96,581 - MPMX20_00093 0.19 -4.1
96,581 - MPMX20_00093 0.19 -2.4
96,581 - MPMX20_00093 0.19 -3.3
96,581 - MPMX20_00093 0.19 -3.5
96,581 - MPMX20_00093 0.19 -1.9
96,581 - MPMX20_00093 0.19 -2.9
96,581 - MPMX20_00093 0.19 -2.7
96,581 - MPMX20_00093 0.19 -1.6
96,581 - MPMX20_00093 0.19 -2.6
96,581 - MPMX20_00093 0.19 -1.0
96,581 - MPMX20_00093 0.19 -3.5
96,581 - MPMX20_00093 0.19 -3.8
96,627 + MPMX20_00093 0.26 -1.4
96,633 - MPMX20_00093 0.27 -2.4
96,723 + MPMX20_00093 0.41 -1.3
96,726 - MPMX20_00093 0.42 -3.6
96,738 + MPMX20_00093 0.44 -2.3
96,741 - MPMX20_00093 0.44 -1.4
96,751 - MPMX20_00093 0.46 -1.3
96,767 - MPMX20_00093 0.48 -2.7
96,810 - MPMX20_00093 0.55 -1.3
96,810 - MPMX20_00093 0.55 -1.2
96,830 - MPMX20_00093 0.58 -0.9
96,887 + MPMX20_00093 0.67 -1.3
96,895 - MPMX20_00093 0.68 -0.9
96,895 - MPMX20_00093 0.68 -2.3
96,980 + MPMX20_00093 0.81 +0.8
96,980 + MPMX20_00093 0.81 -1.2
96,988 - MPMX20_00093 0.83 -3.1
97,115 + +0.1
97,151 + -1.9
97,218 - MPMX20_00094 0.13 +0.1
97,233 - MPMX20_00094 0.16 -2.3
97,266 + MPMX20_00094 0.21 +0.0
97,287 - MPMX20_00094 0.25 -1.1
97,319 + MPMX20_00094 0.30 -0.7
97,325 - MPMX20_00094 0.31 -0.2
97,334 + MPMX20_00094 0.33 +0.3
97,356 + MPMX20_00094 0.37 +0.8
97,356 + MPMX20_00094 0.37 +1.0
97,356 + MPMX20_00094 0.37 +2.8
97,364 - MPMX20_00094 0.38 -1.2
97,364 - MPMX20_00094 0.38 +1.8
97,364 - MPMX20_00094 0.38 -0.8
97,390 + MPMX20_00094 0.42 +1.9
97,403 - MPMX20_00094 0.44 -0.7
97,410 + MPMX20_00094 0.46 +1.6
97,418 - MPMX20_00094 0.47 -1.6
97,432 + MPMX20_00094 0.49 +0.3
97,447 - MPMX20_00094 0.52 -2.6
97,626 + MPMX20_00094 0.82 +0.8
97,629 + MPMX20_00094 0.82 +0.1
97,634 - MPMX20_00094 0.83 -0.1
97,713 - -0.1
97,802 - +0.3
97,848 - +0.6

Or see this region's nucleotide sequence