Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03805

Experiment: AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03803 and MPMX20_03804 are separated by 52 nucleotidesMPMX20_03804 and MPMX20_03805 are separated by 39 nucleotidesMPMX20_03805 and MPMX20_03806 are separated by 86 nucleotidesMPMX20_03806 and MPMX20_03807 overlap by 1 nucleotides MPMX20_03803: MPMX20_03803 - Endonuclease-1, at 4,009,950 to 4,010,657 _03803 MPMX20_03804: MPMX20_03804 - Ribosomal RNA small subunit methyltransferase E, at 4,010,710 to 4,011,441 _03804 MPMX20_03805: MPMX20_03805 - Glutathione synthetase, at 4,011,481 to 4,012,428 _03805 MPMX20_03806: MPMX20_03806 - hypothetical protein, at 4,012,515 to 4,013,075 _03806 MPMX20_03807: MPMX20_03807 - Putative pre-16S rRNA nuclease, at 4,013,075 to 4,013,491 _03807 Position (kb) 4011 4012 4013Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4010.494 kb on + strand, within MPMX20_03803at 4010.500 kb on + strand, within MPMX20_03803at 4010.501 kb on + strand, within MPMX20_03803at 4010.531 kb on + strand, within MPMX20_03803at 4010.531 kb on + strand, within MPMX20_03803at 4010.531 kb on + strand, within MPMX20_03803at 4010.606 kb on + strandat 4010.610 kb on + strandat 4010.612 kb on + strandat 4010.618 kb on + strandat 4010.656 kb on + strandat 4010.664 kb on - strandat 4010.727 kb on + strandat 4010.732 kb on + strandat 4010.735 kb on - strandat 4010.740 kb on - strandat 4010.740 kb on - strandat 4010.740 kb on - strandat 4010.740 kb on - strandat 4010.767 kb on - strandat 4010.767 kb on - strandat 4010.824 kb on + strand, within MPMX20_03804at 4010.851 kb on - strand, within MPMX20_03804at 4010.945 kb on + strand, within MPMX20_03804at 4010.960 kb on + strand, within MPMX20_03804at 4011.015 kb on + strand, within MPMX20_03804at 4011.017 kb on + strand, within MPMX20_03804at 4011.122 kb on + strand, within MPMX20_03804at 4011.130 kb on - strand, within MPMX20_03804at 4011.135 kb on - strand, within MPMX20_03804at 4011.218 kb on + strand, within MPMX20_03804at 4011.221 kb on - strand, within MPMX20_03804at 4011.221 kb on - strand, within MPMX20_03804at 4011.442 kb on + strandat 4011.450 kb on - strandat 4011.450 kb on - strandat 4011.489 kb on + strandat 4011.499 kb on + strandat 4011.519 kb on + strandat 4011.527 kb on - strandat 4011.527 kb on - strandat 4011.555 kb on + strandat 4011.563 kb on - strandat 4011.563 kb on - strandat 4011.575 kb on + strandat 4011.590 kb on + strand, within MPMX20_03805at 4011.590 kb on + strand, within MPMX20_03805at 4011.590 kb on + strand, within MPMX20_03805at 4011.613 kb on - strand, within MPMX20_03805at 4011.613 kb on - strand, within MPMX20_03805at 4011.702 kb on - strand, within MPMX20_03805at 4011.702 kb on - strand, within MPMX20_03805at 4011.709 kb on - strand, within MPMX20_03805at 4011.717 kb on + strand, within MPMX20_03805at 4011.765 kb on + strand, within MPMX20_03805at 4011.783 kb on - strand, within MPMX20_03805at 4011.789 kb on - strand, within MPMX20_03805at 4011.834 kb on - strand, within MPMX20_03805at 4011.842 kb on + strand, within MPMX20_03805at 4011.855 kb on + strand, within MPMX20_03805at 4011.855 kb on + strand, within MPMX20_03805at 4011.855 kb on + strand, within MPMX20_03805at 4011.855 kb on + strand, within MPMX20_03805at 4011.855 kb on + strand, within MPMX20_03805at 4011.855 kb on + strand, within MPMX20_03805at 4011.855 kb on + strand, within MPMX20_03805at 4011.855 kb on + strand, within MPMX20_03805at 4011.855 kb on + strand, within MPMX20_03805at 4011.855 kb on + strand, within MPMX20_03805at 4011.863 kb on - strand, within MPMX20_03805at 4011.863 kb on - strand, within MPMX20_03805at 4011.863 kb on - strand, within MPMX20_03805at 4011.863 kb on - strand, within MPMX20_03805at 4011.863 kb on - strand, within MPMX20_03805at 4011.863 kb on - strand, within MPMX20_03805at 4011.863 kb on - strand, within MPMX20_03805at 4011.863 kb on - strand, within MPMX20_03805at 4011.863 kb on - strand, within MPMX20_03805at 4011.863 kb on - strand, within MPMX20_03805at 4011.863 kb on - strand, within MPMX20_03805at 4011.863 kb on - strand, within MPMX20_03805at 4011.863 kb on - strand, within MPMX20_03805at 4011.863 kb on - strand, within MPMX20_03805at 4011.872 kb on + strand, within MPMX20_03805at 4011.872 kb on + strand, within MPMX20_03805at 4011.873 kb on - strand, within MPMX20_03805at 4011.926 kb on - strand, within MPMX20_03805at 4011.926 kb on - strand, within MPMX20_03805at 4011.932 kb on + strand, within MPMX20_03805at 4012.058 kb on - strand, within MPMX20_03805at 4012.065 kb on - strand, within MPMX20_03805at 4012.069 kb on + strand, within MPMX20_03805at 4012.069 kb on + strand, within MPMX20_03805at 4012.069 kb on + strand, within MPMX20_03805at 4012.069 kb on + strand, within MPMX20_03805at 4012.300 kb on - strand, within MPMX20_03805at 4012.300 kb on - strand, within MPMX20_03805at 4012.307 kb on + strand, within MPMX20_03805at 4012.312 kb on + strand, within MPMX20_03805at 4012.322 kb on + strand, within MPMX20_03805at 4012.322 kb on + strand, within MPMX20_03805at 4012.346 kb on + strandat 4012.385 kb on + strandat 4012.393 kb on - strandat 4012.395 kb on + strandat 4012.439 kb on - strandat 4012.478 kb on - strandat 4012.584 kb on + strand, within MPMX20_03806at 4012.890 kb on + strand, within MPMX20_03806at 4012.895 kb on + strand, within MPMX20_03806at 4012.945 kb on + strand, within MPMX20_03806at 4012.976 kb on - strand, within MPMX20_03806at 4012.978 kb on - strand, within MPMX20_03806at 4013.032 kb on + strandat 4013.069 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001
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4,010,494 + MPMX20_03803 0.77 +2.9
4,010,500 + MPMX20_03803 0.78 -1.4
4,010,501 + MPMX20_03803 0.78 +1.8
4,010,531 + MPMX20_03803 0.82 +1.4
4,010,531 + MPMX20_03803 0.82 -0.2
4,010,531 + MPMX20_03803 0.82 +2.0
4,010,606 + +2.0
4,010,610 + -2.1
4,010,612 + +1.1
4,010,618 + -2.5
4,010,656 + -1.0
4,010,664 - +0.3
4,010,727 + -1.3
4,010,732 + -3.3
4,010,735 - +4.4
4,010,740 - +1.6
4,010,740 - +0.7
4,010,740 - -0.3
4,010,740 - -3.3
4,010,767 - -0.9
4,010,767 - +0.3
4,010,824 + MPMX20_03804 0.16 +0.9
4,010,851 - MPMX20_03804 0.19 -2.1
4,010,945 + MPMX20_03804 0.32 -2.3
4,010,960 + MPMX20_03804 0.34 -1.9
4,011,015 + MPMX20_03804 0.42 +3.4
4,011,017 + MPMX20_03804 0.42 -3.6
4,011,122 + MPMX20_03804 0.56 -0.4
4,011,130 - MPMX20_03804 0.57 +1.3
4,011,135 - MPMX20_03804 0.58 +0.9
4,011,218 + MPMX20_03804 0.69 +1.6
4,011,221 - MPMX20_03804 0.70 +1.2
4,011,221 - MPMX20_03804 0.70 -0.8
4,011,442 + +3.7
4,011,450 - -2.3
4,011,450 - +1.1
4,011,489 + -1.1
4,011,499 + -2.9
4,011,519 + -2.6
4,011,527 - -0.5
4,011,527 - -3.4
4,011,555 + +3.4
4,011,563 - -1.5
4,011,563 - +0.1
4,011,575 + -4.1
4,011,590 + MPMX20_03805 0.11 -1.7
4,011,590 + MPMX20_03805 0.11 -2.0
4,011,590 + MPMX20_03805 0.11 -4.1
4,011,613 - MPMX20_03805 0.14 -3.2
4,011,613 - MPMX20_03805 0.14 -3.8
4,011,702 - MPMX20_03805 0.23 -2.7
4,011,702 - MPMX20_03805 0.23 +0.9
4,011,709 - MPMX20_03805 0.24 -1.1
4,011,717 + MPMX20_03805 0.25 -1.8
4,011,765 + MPMX20_03805 0.30 -3.5
4,011,783 - MPMX20_03805 0.32 -1.9
4,011,789 - MPMX20_03805 0.32 -2.3
4,011,834 - MPMX20_03805 0.37 -2.1
4,011,842 + MPMX20_03805 0.38 -1.6
4,011,855 + MPMX20_03805 0.39 -0.8
4,011,855 + MPMX20_03805 0.39 -3.2
4,011,855 + MPMX20_03805 0.39 -0.3
4,011,855 + MPMX20_03805 0.39 -1.5
4,011,855 + MPMX20_03805 0.39 -1.8
4,011,855 + MPMX20_03805 0.39 -1.0
4,011,855 + MPMX20_03805 0.39 -1.6
4,011,855 + MPMX20_03805 0.39 -4.0
4,011,855 + MPMX20_03805 0.39 -1.9
4,011,855 + MPMX20_03805 0.39 -2.8
4,011,863 - MPMX20_03805 0.40 +0.9
4,011,863 - MPMX20_03805 0.40 +0.5
4,011,863 - MPMX20_03805 0.40 -3.1
4,011,863 - MPMX20_03805 0.40 -0.1
4,011,863 - MPMX20_03805 0.40 -4.5
4,011,863 - MPMX20_03805 0.40 -0.2
4,011,863 - MPMX20_03805 0.40 -0.5
4,011,863 - MPMX20_03805 0.40 -0.6
4,011,863 - MPMX20_03805 0.40 -4.6
4,011,863 - MPMX20_03805 0.40 -0.7
4,011,863 - MPMX20_03805 0.40 +0.3
4,011,863 - MPMX20_03805 0.40 -0.5
4,011,863 - MPMX20_03805 0.40 -0.1
4,011,863 - MPMX20_03805 0.40 +1.4
4,011,872 + MPMX20_03805 0.41 -0.2
4,011,872 + MPMX20_03805 0.41 -3.3
4,011,873 - MPMX20_03805 0.41 -2.5
4,011,926 - MPMX20_03805 0.47 +1.2
4,011,926 - MPMX20_03805 0.47 -2.9
4,011,932 + MPMX20_03805 0.48 -4.6
4,012,058 - MPMX20_03805 0.61 -2.5
4,012,065 - MPMX20_03805 0.62 -2.1
4,012,069 + MPMX20_03805 0.62 -3.1
4,012,069 + MPMX20_03805 0.62 -3.7
4,012,069 + MPMX20_03805 0.62 -3.2
4,012,069 + MPMX20_03805 0.62 +0.4
4,012,300 - MPMX20_03805 0.86 +0.6
4,012,300 - MPMX20_03805 0.86 -0.5
4,012,307 + MPMX20_03805 0.87 -0.8
4,012,312 + MPMX20_03805 0.88 -1.8
4,012,322 + MPMX20_03805 0.89 -2.9
4,012,322 + MPMX20_03805 0.89 +2.3
4,012,346 + -1.8
4,012,385 + +1.0
4,012,393 - -2.8
4,012,395 + -0.2
4,012,439 - +1.3
4,012,478 - +2.2
4,012,584 + MPMX20_03806 0.12 -0.6
4,012,890 + MPMX20_03806 0.67 -2.7
4,012,895 + MPMX20_03806 0.68 +1.5
4,012,945 + MPMX20_03806 0.77 -0.4
4,012,976 - MPMX20_03806 0.82 +2.4
4,012,978 - MPMX20_03806 0.83 +0.9
4,013,032 + -2.4
4,013,069 + -0.0

Or see this region's nucleotide sequence