Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03485

Experiment: AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03482 and MPMX20_03483 are separated by 51 nucleotidesMPMX20_03483 and MPMX20_03484 overlap by 8 nucleotidesMPMX20_03484 and MPMX20_03485 are separated by 22 nucleotidesMPMX20_03485 and MPMX20_03486 are separated by 85 nucleotides MPMX20_03482: MPMX20_03482 - hypothetical protein, at 3,671,333 to 3,672,574 _03482 MPMX20_03483: MPMX20_03483 - Protein GrpE, at 3,672,626 to 3,673,219 _03483 MPMX20_03484: MPMX20_03484 - hypothetical protein, at 3,673,212 to 3,673,319 _03484 MPMX20_03485: MPMX20_03485 - NAD kinase, at 3,673,342 to 3,674,220 _03485 MPMX20_03486: MPMX20_03486 - DNA repair protein RecN, at 3,674,306 to 3,675,967 _03486 Position (kb) 3673 3674 3675Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3672.375 kb on - strand, within MPMX20_03482at 3672.411 kb on + strand, within MPMX20_03482at 3672.411 kb on + strand, within MPMX20_03482at 3672.471 kb on + strandat 3672.526 kb on + strandat 3672.534 kb on - strandat 3672.561 kb on + strandat 3672.561 kb on + strandat 3672.566 kb on + strandat 3672.569 kb on - strandat 3672.569 kb on - strandat 3672.569 kb on - strandat 3672.571 kb on + strandat 3672.571 kb on + strandat 3672.579 kb on - strandat 3672.579 kb on - strandat 3672.579 kb on - strandat 3672.579 kb on - strandat 3672.579 kb on - strandat 3672.584 kb on - strandat 3673.308 kb on + strand, within MPMX20_03484at 3674.470 kb on + strandat 3674.476 kb on - strand, within MPMX20_03486at 3674.525 kb on - strand, within MPMX20_03486at 3674.541 kb on + strand, within MPMX20_03486at 3674.565 kb on - strand, within MPMX20_03486at 3674.774 kb on - strand, within MPMX20_03486at 3674.804 kb on + strand, within MPMX20_03486at 3674.804 kb on + strand, within MPMX20_03486at 3674.814 kb on + strand, within MPMX20_03486at 3674.851 kb on - strand, within MPMX20_03486at 3674.942 kb on + strand, within MPMX20_03486at 3674.950 kb on - strand, within MPMX20_03486at 3674.964 kb on - strand, within MPMX20_03486at 3674.964 kb on - strand, within MPMX20_03486at 3674.975 kb on + strand, within MPMX20_03486at 3674.979 kb on + strand, within MPMX20_03486at 3674.982 kb on - strand, within MPMX20_03486at 3675.015 kb on + strand, within MPMX20_03486at 3675.037 kb on - strand, within MPMX20_03486at 3675.051 kb on - strand, within MPMX20_03486at 3675.063 kb on + strand, within MPMX20_03486at 3675.071 kb on - strand, within MPMX20_03486

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001
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3,672,375 - MPMX20_03482 0.84 -0.2
3,672,411 + MPMX20_03482 0.87 -0.0
3,672,411 + MPMX20_03482 0.87 +2.4
3,672,471 + -3.5
3,672,526 + +1.6
3,672,534 - +1.2
3,672,561 + -0.8
3,672,561 + -1.5
3,672,566 + -3.6
3,672,569 - -0.7
3,672,569 - -1.1
3,672,569 - +0.3
3,672,571 + +1.6
3,672,571 + -0.3
3,672,579 - +1.9
3,672,579 - -1.9
3,672,579 - +0.4
3,672,579 - -0.8
3,672,579 - +0.2
3,672,584 - -2.2
3,673,308 + MPMX20_03484 0.89 +2.0
3,674,470 + +1.2
3,674,476 - MPMX20_03486 0.10 -0.7
3,674,525 - MPMX20_03486 0.13 -3.3
3,674,541 + MPMX20_03486 0.14 -1.4
3,674,565 - MPMX20_03486 0.16 +2.8
3,674,774 - MPMX20_03486 0.28 +1.7
3,674,804 + MPMX20_03486 0.30 -0.5
3,674,804 + MPMX20_03486 0.30 -3.3
3,674,814 + MPMX20_03486 0.31 +0.5
3,674,851 - MPMX20_03486 0.33 -1.1
3,674,942 + MPMX20_03486 0.38 -0.4
3,674,950 - MPMX20_03486 0.39 +1.7
3,674,964 - MPMX20_03486 0.40 +0.4
3,674,964 - MPMX20_03486 0.40 -3.3
3,674,975 + MPMX20_03486 0.40 -1.2
3,674,979 + MPMX20_03486 0.40 +1.2
3,674,982 - MPMX20_03486 0.41 -1.8
3,675,015 + MPMX20_03486 0.43 +1.7
3,675,037 - MPMX20_03486 0.44 -1.0
3,675,051 - MPMX20_03486 0.45 -3.7
3,675,063 + MPMX20_03486 0.46 +0.3
3,675,071 - MPMX20_03486 0.46 +0.1

Or see this region's nucleotide sequence