Experiment: AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03482 and MPMX20_03483 are separated by 51 nucleotides MPMX20_03483 and MPMX20_03484 overlap by 8 nucleotides MPMX20_03484 and MPMX20_03485 are separated by 22 nucleotides MPMX20_03485 and MPMX20_03486 are separated by 85 nucleotides
MPMX20_03482: MPMX20_03482 - hypothetical protein, at 3,671,333 to 3,672,574
_03482
MPMX20_03483: MPMX20_03483 - Protein GrpE, at 3,672,626 to 3,673,219
_03483
MPMX20_03484: MPMX20_03484 - hypothetical protein, at 3,673,212 to 3,673,319
_03484
MPMX20_03485: MPMX20_03485 - NAD kinase, at 3,673,342 to 3,674,220
_03485
MPMX20_03486: MPMX20_03486 - DNA repair protein RecN, at 3,674,306 to 3,675,967
_03486
Position (kb)
3673
3674
3675 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3672.375 kb on - strand, within MPMX20_03482 at 3672.411 kb on + strand, within MPMX20_03482 at 3672.411 kb on + strand, within MPMX20_03482 at 3672.471 kb on + strand at 3672.526 kb on + strand at 3672.534 kb on - strand at 3672.561 kb on + strand at 3672.561 kb on + strand at 3672.566 kb on + strand at 3672.569 kb on - strand at 3672.569 kb on - strand at 3672.569 kb on - strand at 3672.571 kb on + strand at 3672.571 kb on + strand at 3672.579 kb on - strand at 3672.579 kb on - strand at 3672.579 kb on - strand at 3672.579 kb on - strand at 3672.579 kb on - strand at 3672.584 kb on - strand at 3673.308 kb on + strand, within MPMX20_03484 at 3674.470 kb on + strand at 3674.476 kb on - strand, within MPMX20_03486 at 3674.525 kb on - strand, within MPMX20_03486 at 3674.541 kb on + strand, within MPMX20_03486 at 3674.565 kb on - strand, within MPMX20_03486 at 3674.774 kb on - strand, within MPMX20_03486 at 3674.804 kb on + strand, within MPMX20_03486 at 3674.804 kb on + strand, within MPMX20_03486 at 3674.814 kb on + strand, within MPMX20_03486 at 3674.851 kb on - strand, within MPMX20_03486 at 3674.942 kb on + strand, within MPMX20_03486 at 3674.950 kb on - strand, within MPMX20_03486 at 3674.964 kb on - strand, within MPMX20_03486 at 3674.964 kb on - strand, within MPMX20_03486 at 3674.975 kb on + strand, within MPMX20_03486 at 3674.979 kb on + strand, within MPMX20_03486 at 3674.982 kb on - strand, within MPMX20_03486 at 3675.015 kb on + strand, within MPMX20_03486 at 3675.037 kb on - strand, within MPMX20_03486 at 3675.051 kb on - strand, within MPMX20_03486 at 3675.063 kb on + strand, within MPMX20_03486 at 3675.071 kb on - strand, within MPMX20_03486
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001 remove 3,672,375 - MPMX20_03482 0.84 -0.2 3,672,411 + MPMX20_03482 0.87 -0.0 3,672,411 + MPMX20_03482 0.87 +2.4 3,672,471 + -3.5 3,672,526 + +1.6 3,672,534 - +1.2 3,672,561 + -0.8 3,672,561 + -1.5 3,672,566 + -3.6 3,672,569 - -0.7 3,672,569 - -1.1 3,672,569 - +0.3 3,672,571 + +1.6 3,672,571 + -0.3 3,672,579 - +1.9 3,672,579 - -1.9 3,672,579 - +0.4 3,672,579 - -0.8 3,672,579 - +0.2 3,672,584 - -2.2 3,673,308 + MPMX20_03484 0.89 +2.0 3,674,470 + +1.2 3,674,476 - MPMX20_03486 0.10 -0.7 3,674,525 - MPMX20_03486 0.13 -3.3 3,674,541 + MPMX20_03486 0.14 -1.4 3,674,565 - MPMX20_03486 0.16 +2.8 3,674,774 - MPMX20_03486 0.28 +1.7 3,674,804 + MPMX20_03486 0.30 -0.5 3,674,804 + MPMX20_03486 0.30 -3.3 3,674,814 + MPMX20_03486 0.31 +0.5 3,674,851 - MPMX20_03486 0.33 -1.1 3,674,942 + MPMX20_03486 0.38 -0.4 3,674,950 - MPMX20_03486 0.39 +1.7 3,674,964 - MPMX20_03486 0.40 +0.4 3,674,964 - MPMX20_03486 0.40 -3.3 3,674,975 + MPMX20_03486 0.40 -1.2 3,674,979 + MPMX20_03486 0.40 +1.2 3,674,982 - MPMX20_03486 0.41 -1.8 3,675,015 + MPMX20_03486 0.43 +1.7 3,675,037 - MPMX20_03486 0.44 -1.0 3,675,051 - MPMX20_03486 0.45 -3.7 3,675,063 + MPMX20_03486 0.46 +0.3 3,675,071 - MPMX20_03486 0.46 +0.1
Or see this region's nucleotide sequence