Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02836

Experiment: AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02834 and MPMX20_02835 are separated by 11 nucleotidesMPMX20_02835 and MPMX20_02836 are separated by 46 nucleotidesMPMX20_02836 and MPMX20_02837 are separated by 152 nucleotidesMPMX20_02837 and MPMX20_02838 are separated by 56 nucleotides MPMX20_02834: MPMX20_02834 - tRNA-Leu, at 2,990,872 to 2,990,958 _02834 MPMX20_02835: MPMX20_02835 - tRNA-Cys, at 2,990,970 to 2,991,043 _02835 MPMX20_02836: MPMX20_02836 - tRNA-Gly, at 2,991,090 to 2,991,165 _02836 MPMX20_02837: MPMX20_02837 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,991,318 to 2,991,866 _02837 MPMX20_02838: MPMX20_02838 - UvrABC system protein C, at 2,991,923 to 2,993,755 _02838 Position (kb) 2991 2992Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2990.096 kb on - strandat 2990.122 kb on + strandat 2990.125 kb on + strandat 2990.138 kb on + strandat 2990.139 kb on + strandat 2990.146 kb on - strandat 2990.146 kb on - strandat 2990.153 kb on - strandat 2990.182 kb on - strandat 2990.184 kb on + strandat 2990.200 kb on - strandat 2990.207 kb on - strandat 2990.210 kb on - strandat 2990.210 kb on - strandat 2990.220 kb on + strandat 2990.220 kb on + strandat 2990.228 kb on - strandat 2990.263 kb on - strandat 2990.284 kb on + strandat 2990.293 kb on - strandat 2990.308 kb on + strandat 2990.345 kb on - strandat 2990.358 kb on - strandat 2990.362 kb on - strandat 2990.440 kb on + strandat 2990.440 kb on + strandat 2990.448 kb on - strandat 2990.499 kb on - strandat 2990.503 kb on + strandat 2990.503 kb on + strandat 2990.503 kb on + strandat 2990.540 kb on + strandat 2990.540 kb on + strandat 2990.540 kb on + strandat 2990.540 kb on + strandat 2990.540 kb on + strandat 2990.540 kb on + strandat 2990.548 kb on - strandat 2990.548 kb on - strandat 2990.548 kb on - strandat 2990.548 kb on - strandat 2990.548 kb on - strandat 2990.548 kb on - strandat 2990.548 kb on - strandat 2990.550 kb on + strandat 2990.550 kb on + strandat 2990.550 kb on + strandat 2990.550 kb on + strandat 2990.550 kb on + strandat 2990.550 kb on + strandat 2990.550 kb on + strandat 2990.550 kb on + strandat 2990.550 kb on + strandat 2990.558 kb on - strandat 2990.558 kb on - strandat 2990.558 kb on - strandat 2990.558 kb on - strandat 2990.558 kb on - strandat 2990.558 kb on - strandat 2990.558 kb on - strandat 2990.558 kb on - strandat 2990.558 kb on - strandat 2990.558 kb on - strandat 2990.558 kb on - strandat 2990.558 kb on - strandat 2990.558 kb on - strandat 2990.564 kb on + strandat 2990.569 kb on + strandat 2990.579 kb on + strandat 2990.656 kb on + strandat 2990.672 kb on + strandat 2990.715 kb on + strandat 2990.716 kb on + strandat 2990.754 kb on - strandat 2990.754 kb on - strandat 2990.767 kb on - strandat 2991.313 kb on + strandat 2991.927 kb on - strandat 2991.947 kb on - strandat 2992.007 kb on + strandat 2992.015 kb on - strandat 2992.068 kb on - strandat 2992.076 kb on + strandat 2992.084 kb on - strandat 2992.085 kb on - strandat 2992.086 kb on + strandat 2992.158 kb on - strand, within MPMX20_02838

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001
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2,990,096 - -1.8
2,990,122 + +0.8
2,990,125 + +0.2
2,990,138 + +0.7
2,990,139 + +0.4
2,990,146 - +2.8
2,990,146 - -1.8
2,990,153 - -2.4
2,990,182 - -1.9
2,990,184 + +0.7
2,990,200 - +1.6
2,990,207 - -1.9
2,990,210 - -0.8
2,990,210 - -2.2
2,990,220 + -1.4
2,990,220 + -2.1
2,990,228 - +2.7
2,990,263 - -1.7
2,990,284 + +0.6
2,990,293 - +0.2
2,990,308 + -1.5
2,990,345 - -3.4
2,990,358 - -2.8
2,990,362 - +2.4
2,990,440 + -0.5
2,990,440 + +2.6
2,990,448 - +1.4
2,990,499 - +2.5
2,990,503 + -2.9
2,990,503 + -0.0
2,990,503 + -1.4
2,990,540 + +2.9
2,990,540 + -3.3
2,990,540 + -1.9
2,990,540 + +0.2
2,990,540 + +0.5
2,990,540 + +0.3
2,990,548 - +1.3
2,990,548 - -0.6
2,990,548 - +0.3
2,990,548 - -0.6
2,990,548 - +1.2
2,990,548 - -1.8
2,990,548 - +1.7
2,990,550 + +2.6
2,990,550 + -1.2
2,990,550 + -3.4
2,990,550 + -3.0
2,990,550 + -1.5
2,990,550 + -0.8
2,990,550 + +1.2
2,990,550 + +1.8
2,990,550 + +1.5
2,990,558 - -2.6
2,990,558 - +0.3
2,990,558 - -2.3
2,990,558 - +3.7
2,990,558 - -2.2
2,990,558 - +0.5
2,990,558 - -0.4
2,990,558 - +1.5
2,990,558 - +2.1
2,990,558 - +2.6
2,990,558 - +1.2
2,990,558 - +1.8
2,990,558 - -1.0
2,990,564 + +0.0
2,990,569 + -2.5
2,990,579 + -1.2
2,990,656 + +1.9
2,990,672 + -3.4
2,990,715 + +0.0
2,990,716 + +0.3
2,990,754 - +0.6
2,990,754 - -2.2
2,990,767 - -1.8
2,991,313 + -3.9
2,991,927 - +1.3
2,991,947 - +1.0
2,992,007 + -2.6
2,992,015 - +0.6
2,992,068 - -1.5
2,992,076 + +1.0
2,992,084 - +0.7
2,992,085 - -4.2
2,992,086 + -3.3
2,992,158 - MPMX20_02838 0.13 +0.3

Or see this region's nucleotide sequence