Experiment: AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02834 and MPMX20_02835 are separated by 11 nucleotides MPMX20_02835 and MPMX20_02836 are separated by 46 nucleotides MPMX20_02836 and MPMX20_02837 are separated by 152 nucleotides MPMX20_02837 and MPMX20_02838 are separated by 56 nucleotides
MPMX20_02834: MPMX20_02834 - tRNA-Leu, at 2,990,872 to 2,990,958
_02834
MPMX20_02835: MPMX20_02835 - tRNA-Cys, at 2,990,970 to 2,991,043
_02835
MPMX20_02836: MPMX20_02836 - tRNA-Gly, at 2,991,090 to 2,991,165
_02836
MPMX20_02837: MPMX20_02837 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,991,318 to 2,991,866
_02837
MPMX20_02838: MPMX20_02838 - UvrABC system protein C, at 2,991,923 to 2,993,755
_02838
Position (kb)
2991
2992 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2990.096 kb on - strand at 2990.122 kb on + strand at 2990.125 kb on + strand at 2990.138 kb on + strand at 2990.139 kb on + strand at 2990.146 kb on - strand at 2990.146 kb on - strand at 2990.153 kb on - strand at 2990.182 kb on - strand at 2990.184 kb on + strand at 2990.200 kb on - strand at 2990.207 kb on - strand at 2990.210 kb on - strand at 2990.210 kb on - strand at 2990.220 kb on + strand at 2990.220 kb on + strand at 2990.228 kb on - strand at 2990.263 kb on - strand at 2990.284 kb on + strand at 2990.293 kb on - strand at 2990.308 kb on + strand at 2990.345 kb on - strand at 2990.358 kb on - strand at 2990.362 kb on - strand at 2990.440 kb on + strand at 2990.440 kb on + strand at 2990.448 kb on - strand at 2990.499 kb on - strand at 2990.503 kb on + strand at 2990.503 kb on + strand at 2990.503 kb on + strand at 2990.540 kb on + strand at 2990.540 kb on + strand at 2990.540 kb on + strand at 2990.540 kb on + strand at 2990.540 kb on + strand at 2990.540 kb on + strand at 2990.548 kb on - strand at 2990.548 kb on - strand at 2990.548 kb on - strand at 2990.548 kb on - strand at 2990.548 kb on - strand at 2990.548 kb on - strand at 2990.548 kb on - strand at 2990.550 kb on + strand at 2990.550 kb on + strand at 2990.550 kb on + strand at 2990.550 kb on + strand at 2990.550 kb on + strand at 2990.550 kb on + strand at 2990.550 kb on + strand at 2990.550 kb on + strand at 2990.550 kb on + strand at 2990.558 kb on - strand at 2990.558 kb on - strand at 2990.558 kb on - strand at 2990.558 kb on - strand at 2990.558 kb on - strand at 2990.558 kb on - strand at 2990.558 kb on - strand at 2990.558 kb on - strand at 2990.558 kb on - strand at 2990.558 kb on - strand at 2990.558 kb on - strand at 2990.558 kb on - strand at 2990.558 kb on - strand at 2990.564 kb on + strand at 2990.569 kb on + strand at 2990.579 kb on + strand at 2990.656 kb on + strand at 2990.672 kb on + strand at 2990.715 kb on + strand at 2990.716 kb on + strand at 2990.754 kb on - strand at 2990.754 kb on - strand at 2990.767 kb on - strand at 2991.313 kb on + strand at 2991.927 kb on - strand at 2991.947 kb on - strand at 2992.007 kb on + strand at 2992.015 kb on - strand at 2992.068 kb on - strand at 2992.076 kb on + strand at 2992.084 kb on - strand at 2992.085 kb on - strand at 2992.086 kb on + strand at 2992.158 kb on - strand, within MPMX20_02838
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001 remove 2,990,096 - -1.8 2,990,122 + +0.8 2,990,125 + +0.2 2,990,138 + +0.7 2,990,139 + +0.4 2,990,146 - +2.8 2,990,146 - -1.8 2,990,153 - -2.4 2,990,182 - -1.9 2,990,184 + +0.7 2,990,200 - +1.6 2,990,207 - -1.9 2,990,210 - -0.8 2,990,210 - -2.2 2,990,220 + -1.4 2,990,220 + -2.1 2,990,228 - +2.7 2,990,263 - -1.7 2,990,284 + +0.6 2,990,293 - +0.2 2,990,308 + -1.5 2,990,345 - -3.4 2,990,358 - -2.8 2,990,362 - +2.4 2,990,440 + -0.5 2,990,440 + +2.6 2,990,448 - +1.4 2,990,499 - +2.5 2,990,503 + -2.9 2,990,503 + -0.0 2,990,503 + -1.4 2,990,540 + +2.9 2,990,540 + -3.3 2,990,540 + -1.9 2,990,540 + +0.2 2,990,540 + +0.5 2,990,540 + +0.3 2,990,548 - +1.3 2,990,548 - -0.6 2,990,548 - +0.3 2,990,548 - -0.6 2,990,548 - +1.2 2,990,548 - -1.8 2,990,548 - +1.7 2,990,550 + +2.6 2,990,550 + -1.2 2,990,550 + -3.4 2,990,550 + -3.0 2,990,550 + -1.5 2,990,550 + -0.8 2,990,550 + +1.2 2,990,550 + +1.8 2,990,550 + +1.5 2,990,558 - -2.6 2,990,558 - +0.3 2,990,558 - -2.3 2,990,558 - +3.7 2,990,558 - -2.2 2,990,558 - +0.5 2,990,558 - -0.4 2,990,558 - +1.5 2,990,558 - +2.1 2,990,558 - +2.6 2,990,558 - +1.2 2,990,558 - +1.8 2,990,558 - -1.0 2,990,564 + +0.0 2,990,569 + -2.5 2,990,579 + -1.2 2,990,656 + +1.9 2,990,672 + -3.4 2,990,715 + +0.0 2,990,716 + +0.3 2,990,754 - +0.6 2,990,754 - -2.2 2,990,767 - -1.8 2,991,313 + -3.9 2,991,927 - +1.3 2,991,947 - +1.0 2,992,007 + -2.6 2,992,015 - +0.6 2,992,068 - -1.5 2,992,076 + +1.0 2,992,084 - +0.7 2,992,085 - -4.2 2,992,086 + -3.3 2,992,158 - MPMX20_02838 0.13 +0.3
Or see this region's nucleotide sequence