Experiment: AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01152 and MPMX20_01153 are separated by 73 nucleotides MPMX20_01153 and MPMX20_01154 are separated by 263 nucleotides MPMX20_01154 and MPMX20_01155 are separated by 23 nucleotides
MPMX20_01152: MPMX20_01152 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 1,213,646 to 1,214,479
_01152
MPMX20_01153: MPMX20_01153 - HTH-type transcriptional activator RhaS, at 1,214,553 to 1,214,972
_01153
MPMX20_01154: MPMX20_01154 - Multidrug resistance protein MdtE, at 1,215,236 to 1,216,411
_01154
MPMX20_01155: MPMX20_01155 - multidrug efflux RND transporter permease subunit OqxB3, at 1,216,435 to 1,219,587
_01155
Position (kb)
1215
1216
1217 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 1214.416 kb on - strand at 1214.461 kb on - strand at 1214.468 kb on + strand at 1214.521 kb on + strand at 1214.575 kb on + strand at 1214.584 kb on + strand at 1214.592 kb on - strand at 1214.697 kb on + strand, within MPMX20_01153 at 1214.702 kb on + strand, within MPMX20_01153 at 1214.712 kb on - strand, within MPMX20_01153 at 1214.827 kb on + strand, within MPMX20_01153 at 1214.835 kb on - strand, within MPMX20_01153 at 1214.844 kb on + strand, within MPMX20_01153 at 1214.909 kb on + strand, within MPMX20_01153 at 1215.029 kb on - strand at 1215.251 kb on - strand at 1215.443 kb on - strand, within MPMX20_01154 at 1215.572 kb on + strand, within MPMX20_01154 at 1215.572 kb on + strand, within MPMX20_01154 at 1215.573 kb on + strand, within MPMX20_01154 at 1215.580 kb on - strand, within MPMX20_01154 at 1215.618 kb on - strand, within MPMX20_01154 at 1215.657 kb on + strand, within MPMX20_01154 at 1215.666 kb on + strand, within MPMX20_01154 at 1215.666 kb on + strand, within MPMX20_01154 at 1215.671 kb on + strand, within MPMX20_01154 at 1215.671 kb on + strand, within MPMX20_01154 at 1215.679 kb on + strand, within MPMX20_01154 at 1215.679 kb on - strand, within MPMX20_01154 at 1215.705 kb on - strand, within MPMX20_01154 at 1215.813 kb on - strand, within MPMX20_01154 at 1215.826 kb on - strand, within MPMX20_01154 at 1215.828 kb on + strand, within MPMX20_01154 at 1215.848 kb on - strand, within MPMX20_01154 at 1215.857 kb on + strand, within MPMX20_01154 at 1215.877 kb on + strand, within MPMX20_01154 at 1215.886 kb on - strand, within MPMX20_01154 at 1215.929 kb on - strand, within MPMX20_01154 at 1215.989 kb on - strand, within MPMX20_01154 at 1215.989 kb on - strand, within MPMX20_01154 at 1216.003 kb on + strand, within MPMX20_01154 at 1216.011 kb on - strand, within MPMX20_01154 at 1216.011 kb on - strand, within MPMX20_01154 at 1216.067 kb on + strand, within MPMX20_01154 at 1216.084 kb on + strand, within MPMX20_01154 at 1216.095 kb on - strand, within MPMX20_01154 at 1216.095 kb on - strand, within MPMX20_01154 at 1216.095 kb on - strand, within MPMX20_01154 at 1216.110 kb on + strand, within MPMX20_01154 at 1216.110 kb on + strand, within MPMX20_01154 at 1216.110 kb on + strand, within MPMX20_01154 at 1216.110 kb on + strand, within MPMX20_01154 at 1216.118 kb on - strand, within MPMX20_01154 at 1216.118 kb on - strand, within MPMX20_01154 at 1216.231 kb on + strand, within MPMX20_01154 at 1216.277 kb on + strand, within MPMX20_01154 at 1216.298 kb on + strand at 1216.298 kb on + strand at 1216.300 kb on + strand at 1216.408 kb on - strand at 1216.565 kb on + strand at 1216.565 kb on + strand at 1216.584 kb on + strand at 1216.590 kb on - strand at 1216.592 kb on - strand at 1216.592 kb on - strand at 1216.650 kb on - strand at 1216.650 kb on - strand at 1216.687 kb on + strand at 1216.710 kb on - strand at 1216.710 kb on - strand at 1216.801 kb on + strand, within MPMX20_01155 at 1216.889 kb on + strand, within MPMX20_01155 at 1216.998 kb on + strand, within MPMX20_01155 at 1217.097 kb on + strand, within MPMX20_01155 at 1217.097 kb on + strand, within MPMX20_01155 at 1217.102 kb on + strand, within MPMX20_01155 at 1217.149 kb on + strand, within MPMX20_01155 at 1217.149 kb on + strand, within MPMX20_01155 at 1217.157 kb on - strand, within MPMX20_01155 at 1217.158 kb on + strand, within MPMX20_01155 at 1217.170 kb on + strand, within MPMX20_01155 at 1217.316 kb on + strand, within MPMX20_01155 at 1217.349 kb on + strand, within MPMX20_01155 at 1217.349 kb on + strand, within MPMX20_01155 at 1217.349 kb on + strand, within MPMX20_01155 at 1217.357 kb on - strand, within MPMX20_01155 at 1217.390 kb on - strand, within MPMX20_01155 at 1217.401 kb on + strand, within MPMX20_01155
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001 remove 1,214,416 - +2.4 1,214,461 - -1.4 1,214,468 + -1.1 1,214,521 + +1.2 1,214,575 + -3.1 1,214,584 + -1.7 1,214,592 - +0.0 1,214,697 + MPMX20_01153 0.34 -2.4 1,214,702 + MPMX20_01153 0.35 -2.2 1,214,712 - MPMX20_01153 0.38 +0.2 1,214,827 + MPMX20_01153 0.65 -3.1 1,214,835 - MPMX20_01153 0.67 -1.1 1,214,844 + MPMX20_01153 0.69 -0.9 1,214,909 + MPMX20_01153 0.85 +0.2 1,215,029 - -0.9 1,215,251 - +2.6 1,215,443 - MPMX20_01154 0.18 -2.0 1,215,572 + MPMX20_01154 0.29 -4.0 1,215,572 + MPMX20_01154 0.29 +0.6 1,215,573 + MPMX20_01154 0.29 +0.9 1,215,580 - MPMX20_01154 0.29 +1.6 1,215,618 - MPMX20_01154 0.32 +0.8 1,215,657 + MPMX20_01154 0.36 -0.2 1,215,666 + MPMX20_01154 0.37 +1.2 1,215,666 + MPMX20_01154 0.37 -3.5 1,215,671 + MPMX20_01154 0.37 -2.0 1,215,671 + MPMX20_01154 0.37 -1.1 1,215,679 + MPMX20_01154 0.38 -0.6 1,215,679 - MPMX20_01154 0.38 +1.2 1,215,705 - MPMX20_01154 0.40 +3.7 1,215,813 - MPMX20_01154 0.49 -0.2 1,215,826 - MPMX20_01154 0.50 -4.0 1,215,828 + MPMX20_01154 0.50 +0.6 1,215,848 - MPMX20_01154 0.52 +0.6 1,215,857 + MPMX20_01154 0.53 +0.1 1,215,877 + MPMX20_01154 0.55 -4.4 1,215,886 - MPMX20_01154 0.55 -1.9 1,215,929 - MPMX20_01154 0.59 -1.5 1,215,989 - MPMX20_01154 0.64 -1.7 1,215,989 - MPMX20_01154 0.64 -1.3 1,216,003 + MPMX20_01154 0.65 -3.3 1,216,011 - MPMX20_01154 0.66 -4.3 1,216,011 - MPMX20_01154 0.66 -3.0 1,216,067 + MPMX20_01154 0.71 -0.5 1,216,084 + MPMX20_01154 0.72 +0.5 1,216,095 - MPMX20_01154 0.73 -2.2 1,216,095 - MPMX20_01154 0.73 +0.5 1,216,095 - MPMX20_01154 0.73 -4.8 1,216,110 + MPMX20_01154 0.74 -2.6 1,216,110 + MPMX20_01154 0.74 +4.0 1,216,110 + MPMX20_01154 0.74 -2.6 1,216,110 + MPMX20_01154 0.74 +2.2 1,216,118 - MPMX20_01154 0.75 -2.3 1,216,118 - MPMX20_01154 0.75 +1.0 1,216,231 + MPMX20_01154 0.85 +2.3 1,216,277 + MPMX20_01154 0.89 -0.8 1,216,298 + +1.5 1,216,298 + +0.2 1,216,300 + -3.3 1,216,408 - +2.4 1,216,565 + +0.2 1,216,565 + -2.8 1,216,584 + +0.8 1,216,590 - +2.0 1,216,592 - -2.1 1,216,592 - -1.3 1,216,650 - -2.4 1,216,650 - +2.2 1,216,687 + -3.7 1,216,710 - -3.7 1,216,710 - -1.5 1,216,801 + MPMX20_01155 0.12 -0.2 1,216,889 + MPMX20_01155 0.14 +0.4 1,216,998 + MPMX20_01155 0.18 +1.2 1,217,097 + MPMX20_01155 0.21 +1.1 1,217,097 + MPMX20_01155 0.21 +0.4 1,217,102 + MPMX20_01155 0.21 -0.2 1,217,149 + MPMX20_01155 0.23 -2.2 1,217,149 + MPMX20_01155 0.23 -2.8 1,217,157 - MPMX20_01155 0.23 -2.7 1,217,158 + MPMX20_01155 0.23 -3.2 1,217,170 + MPMX20_01155 0.23 -0.6 1,217,316 + MPMX20_01155 0.28 -1.9 1,217,349 + MPMX20_01155 0.29 +1.5 1,217,349 + MPMX20_01155 0.29 +0.2 1,217,349 + MPMX20_01155 0.29 +1.0 1,217,357 - MPMX20_01155 0.29 +1.2 1,217,390 - MPMX20_01155 0.30 +1.7 1,217,401 + MPMX20_01155 0.31 +4.1
Or see this region's nucleotide sequence