Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01154

Experiment: AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01152 and MPMX20_01153 are separated by 73 nucleotidesMPMX20_01153 and MPMX20_01154 are separated by 263 nucleotidesMPMX20_01154 and MPMX20_01155 are separated by 23 nucleotides MPMX20_01152: MPMX20_01152 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 1,213,646 to 1,214,479 _01152 MPMX20_01153: MPMX20_01153 - HTH-type transcriptional activator RhaS, at 1,214,553 to 1,214,972 _01153 MPMX20_01154: MPMX20_01154 - Multidrug resistance protein MdtE, at 1,215,236 to 1,216,411 _01154 MPMX20_01155: MPMX20_01155 - multidrug efflux RND transporter permease subunit OqxB3, at 1,216,435 to 1,219,587 _01155 Position (kb) 1215 1216 1217Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1214.416 kb on - strandat 1214.461 kb on - strandat 1214.468 kb on + strandat 1214.521 kb on + strandat 1214.575 kb on + strandat 1214.584 kb on + strandat 1214.592 kb on - strandat 1214.697 kb on + strand, within MPMX20_01153at 1214.702 kb on + strand, within MPMX20_01153at 1214.712 kb on - strand, within MPMX20_01153at 1214.827 kb on + strand, within MPMX20_01153at 1214.835 kb on - strand, within MPMX20_01153at 1214.844 kb on + strand, within MPMX20_01153at 1214.909 kb on + strand, within MPMX20_01153at 1215.029 kb on - strandat 1215.251 kb on - strandat 1215.443 kb on - strand, within MPMX20_01154at 1215.572 kb on + strand, within MPMX20_01154at 1215.572 kb on + strand, within MPMX20_01154at 1215.573 kb on + strand, within MPMX20_01154at 1215.580 kb on - strand, within MPMX20_01154at 1215.618 kb on - strand, within MPMX20_01154at 1215.657 kb on + strand, within MPMX20_01154at 1215.666 kb on + strand, within MPMX20_01154at 1215.666 kb on + strand, within MPMX20_01154at 1215.671 kb on + strand, within MPMX20_01154at 1215.671 kb on + strand, within MPMX20_01154at 1215.679 kb on + strand, within MPMX20_01154at 1215.679 kb on - strand, within MPMX20_01154at 1215.705 kb on - strand, within MPMX20_01154at 1215.813 kb on - strand, within MPMX20_01154at 1215.826 kb on - strand, within MPMX20_01154at 1215.828 kb on + strand, within MPMX20_01154at 1215.848 kb on - strand, within MPMX20_01154at 1215.857 kb on + strand, within MPMX20_01154at 1215.877 kb on + strand, within MPMX20_01154at 1215.886 kb on - strand, within MPMX20_01154at 1215.929 kb on - strand, within MPMX20_01154at 1215.989 kb on - strand, within MPMX20_01154at 1215.989 kb on - strand, within MPMX20_01154at 1216.003 kb on + strand, within MPMX20_01154at 1216.011 kb on - strand, within MPMX20_01154at 1216.011 kb on - strand, within MPMX20_01154at 1216.067 kb on + strand, within MPMX20_01154at 1216.084 kb on + strand, within MPMX20_01154at 1216.095 kb on - strand, within MPMX20_01154at 1216.095 kb on - strand, within MPMX20_01154at 1216.095 kb on - strand, within MPMX20_01154at 1216.110 kb on + strand, within MPMX20_01154at 1216.110 kb on + strand, within MPMX20_01154at 1216.110 kb on + strand, within MPMX20_01154at 1216.110 kb on + strand, within MPMX20_01154at 1216.118 kb on - strand, within MPMX20_01154at 1216.118 kb on - strand, within MPMX20_01154at 1216.231 kb on + strand, within MPMX20_01154at 1216.277 kb on + strand, within MPMX20_01154at 1216.298 kb on + strandat 1216.298 kb on + strandat 1216.300 kb on + strandat 1216.408 kb on - strandat 1216.565 kb on + strandat 1216.565 kb on + strandat 1216.584 kb on + strandat 1216.590 kb on - strandat 1216.592 kb on - strandat 1216.592 kb on - strandat 1216.650 kb on - strandat 1216.650 kb on - strandat 1216.687 kb on + strandat 1216.710 kb on - strandat 1216.710 kb on - strandat 1216.801 kb on + strand, within MPMX20_01155at 1216.889 kb on + strand, within MPMX20_01155at 1216.998 kb on + strand, within MPMX20_01155at 1217.097 kb on + strand, within MPMX20_01155at 1217.097 kb on + strand, within MPMX20_01155at 1217.102 kb on + strand, within MPMX20_01155at 1217.149 kb on + strand, within MPMX20_01155at 1217.149 kb on + strand, within MPMX20_01155at 1217.157 kb on - strand, within MPMX20_01155at 1217.158 kb on + strand, within MPMX20_01155at 1217.170 kb on + strand, within MPMX20_01155at 1217.316 kb on + strand, within MPMX20_01155at 1217.349 kb on + strand, within MPMX20_01155at 1217.349 kb on + strand, within MPMX20_01155at 1217.349 kb on + strand, within MPMX20_01155at 1217.357 kb on - strand, within MPMX20_01155at 1217.390 kb on - strand, within MPMX20_01155at 1217.401 kb on + strand, within MPMX20_01155

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001
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1,214,416 - +2.4
1,214,461 - -1.4
1,214,468 + -1.1
1,214,521 + +1.2
1,214,575 + -3.1
1,214,584 + -1.7
1,214,592 - +0.0
1,214,697 + MPMX20_01153 0.34 -2.4
1,214,702 + MPMX20_01153 0.35 -2.2
1,214,712 - MPMX20_01153 0.38 +0.2
1,214,827 + MPMX20_01153 0.65 -3.1
1,214,835 - MPMX20_01153 0.67 -1.1
1,214,844 + MPMX20_01153 0.69 -0.9
1,214,909 + MPMX20_01153 0.85 +0.2
1,215,029 - -0.9
1,215,251 - +2.6
1,215,443 - MPMX20_01154 0.18 -2.0
1,215,572 + MPMX20_01154 0.29 -4.0
1,215,572 + MPMX20_01154 0.29 +0.6
1,215,573 + MPMX20_01154 0.29 +0.9
1,215,580 - MPMX20_01154 0.29 +1.6
1,215,618 - MPMX20_01154 0.32 +0.8
1,215,657 + MPMX20_01154 0.36 -0.2
1,215,666 + MPMX20_01154 0.37 +1.2
1,215,666 + MPMX20_01154 0.37 -3.5
1,215,671 + MPMX20_01154 0.37 -2.0
1,215,671 + MPMX20_01154 0.37 -1.1
1,215,679 + MPMX20_01154 0.38 -0.6
1,215,679 - MPMX20_01154 0.38 +1.2
1,215,705 - MPMX20_01154 0.40 +3.7
1,215,813 - MPMX20_01154 0.49 -0.2
1,215,826 - MPMX20_01154 0.50 -4.0
1,215,828 + MPMX20_01154 0.50 +0.6
1,215,848 - MPMX20_01154 0.52 +0.6
1,215,857 + MPMX20_01154 0.53 +0.1
1,215,877 + MPMX20_01154 0.55 -4.4
1,215,886 - MPMX20_01154 0.55 -1.9
1,215,929 - MPMX20_01154 0.59 -1.5
1,215,989 - MPMX20_01154 0.64 -1.7
1,215,989 - MPMX20_01154 0.64 -1.3
1,216,003 + MPMX20_01154 0.65 -3.3
1,216,011 - MPMX20_01154 0.66 -4.3
1,216,011 - MPMX20_01154 0.66 -3.0
1,216,067 + MPMX20_01154 0.71 -0.5
1,216,084 + MPMX20_01154 0.72 +0.5
1,216,095 - MPMX20_01154 0.73 -2.2
1,216,095 - MPMX20_01154 0.73 +0.5
1,216,095 - MPMX20_01154 0.73 -4.8
1,216,110 + MPMX20_01154 0.74 -2.6
1,216,110 + MPMX20_01154 0.74 +4.0
1,216,110 + MPMX20_01154 0.74 -2.6
1,216,110 + MPMX20_01154 0.74 +2.2
1,216,118 - MPMX20_01154 0.75 -2.3
1,216,118 - MPMX20_01154 0.75 +1.0
1,216,231 + MPMX20_01154 0.85 +2.3
1,216,277 + MPMX20_01154 0.89 -0.8
1,216,298 + +1.5
1,216,298 + +0.2
1,216,300 + -3.3
1,216,408 - +2.4
1,216,565 + +0.2
1,216,565 + -2.8
1,216,584 + +0.8
1,216,590 - +2.0
1,216,592 - -2.1
1,216,592 - -1.3
1,216,650 - -2.4
1,216,650 - +2.2
1,216,687 + -3.7
1,216,710 - -3.7
1,216,710 - -1.5
1,216,801 + MPMX20_01155 0.12 -0.2
1,216,889 + MPMX20_01155 0.14 +0.4
1,216,998 + MPMX20_01155 0.18 +1.2
1,217,097 + MPMX20_01155 0.21 +1.1
1,217,097 + MPMX20_01155 0.21 +0.4
1,217,102 + MPMX20_01155 0.21 -0.2
1,217,149 + MPMX20_01155 0.23 -2.2
1,217,149 + MPMX20_01155 0.23 -2.8
1,217,157 - MPMX20_01155 0.23 -2.7
1,217,158 + MPMX20_01155 0.23 -3.2
1,217,170 + MPMX20_01155 0.23 -0.6
1,217,316 + MPMX20_01155 0.28 -1.9
1,217,349 + MPMX20_01155 0.29 +1.5
1,217,349 + MPMX20_01155 0.29 +0.2
1,217,349 + MPMX20_01155 0.29 +1.0
1,217,357 - MPMX20_01155 0.29 +1.2
1,217,390 - MPMX20_01155 0.30 +1.7
1,217,401 + MPMX20_01155 0.31 +4.1

Or see this region's nucleotide sequence