Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00749

Experiment: AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00747 and MPMX20_00748 overlap by 4 nucleotidesMPMX20_00748 and MPMX20_00749 overlap by 1 nucleotidesMPMX20_00749 and MPMX20_00750 are separated by 53 nucleotides MPMX20_00747: MPMX20_00747 - Ribosomal RNA small subunit methyltransferase A, at 772,270 to 773,091 _00747 MPMX20_00748: MPMX20_00748 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 773,088 to 774,074 _00748 MPMX20_00749: MPMX20_00749 - Chaperone SurA, at 774,074 to 775,360 _00749 MPMX20_00750: MPMX20_00750 - LPS-assembly protein LptD, at 775,414 to 777,765 _00750 Position (kb) 774 775 776Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 773.076 kb on - strandat 773.152 kb on + strandat 773.155 kb on - strandat 773.157 kb on + strandat 773.157 kb on + strandat 773.157 kb on + strandat 773.157 kb on + strandat 773.177 kb on + strandat 773.180 kb on - strandat 773.182 kb on + strandat 773.249 kb on - strand, within MPMX20_00748at 773.249 kb on - strand, within MPMX20_00748at 773.255 kb on - strand, within MPMX20_00748at 773.335 kb on - strand, within MPMX20_00748at 773.360 kb on + strand, within MPMX20_00748at 773.369 kb on - strand, within MPMX20_00748at 773.450 kb on + strand, within MPMX20_00748at 773.463 kb on + strand, within MPMX20_00748at 773.546 kb on + strand, within MPMX20_00748at 773.554 kb on - strand, within MPMX20_00748at 773.561 kb on + strand, within MPMX20_00748at 773.633 kb on + strand, within MPMX20_00748at 773.641 kb on - strand, within MPMX20_00748at 773.694 kb on - strand, within MPMX20_00748at 773.806 kb on + strand, within MPMX20_00748at 773.855 kb on + strand, within MPMX20_00748at 773.855 kb on + strand, within MPMX20_00748at 773.899 kb on - strand, within MPMX20_00748at 773.907 kb on - strand, within MPMX20_00748at 773.914 kb on + strand, within MPMX20_00748at 773.933 kb on + strand, within MPMX20_00748at 774.061 kb on - strandat 774.273 kb on - strand, within MPMX20_00749at 774.360 kb on - strand, within MPMX20_00749at 774.474 kb on + strand, within MPMX20_00749at 774.480 kb on + strand, within MPMX20_00749at 774.483 kb on - strand, within MPMX20_00749at 774.524 kb on - strand, within MPMX20_00749at 774.574 kb on + strand, within MPMX20_00749at 774.746 kb on - strand, within MPMX20_00749at 774.790 kb on + strand, within MPMX20_00749at 774.904 kb on + strand, within MPMX20_00749at 775.024 kb on + strand, within MPMX20_00749at 775.030 kb on + strand, within MPMX20_00749at 775.032 kb on - strand, within MPMX20_00749at 775.055 kb on + strand, within MPMX20_00749at 775.165 kb on + strand, within MPMX20_00749at 775.168 kb on - strand, within MPMX20_00749at 775.298 kb on - strandat 775.329 kb on + strandat 775.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001
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773,076 - +0.9
773,152 + -0.7
773,155 - +1.7
773,157 + +0.5
773,157 + +1.2
773,157 + -2.0
773,157 + -0.3
773,177 + +0.1
773,180 - +1.1
773,182 + -0.7
773,249 - MPMX20_00748 0.16 +3.6
773,249 - MPMX20_00748 0.16 +2.2
773,255 - MPMX20_00748 0.17 +0.9
773,335 - MPMX20_00748 0.25 +0.9
773,360 + MPMX20_00748 0.28 -2.7
773,369 - MPMX20_00748 0.28 -0.2
773,450 + MPMX20_00748 0.37 +1.8
773,463 + MPMX20_00748 0.38 +0.5
773,546 + MPMX20_00748 0.46 -1.9
773,554 - MPMX20_00748 0.47 +3.6
773,561 + MPMX20_00748 0.48 -2.5
773,633 + MPMX20_00748 0.55 -2.1
773,641 - MPMX20_00748 0.56 -0.2
773,694 - MPMX20_00748 0.61 +0.4
773,806 + MPMX20_00748 0.73 -0.1
773,855 + MPMX20_00748 0.78 +0.7
773,855 + MPMX20_00748 0.78 -2.3
773,899 - MPMX20_00748 0.82 +1.3
773,907 - MPMX20_00748 0.83 -2.1
773,914 + MPMX20_00748 0.84 +2.9
773,933 + MPMX20_00748 0.86 +0.0
774,061 - -3.2
774,273 - MPMX20_00749 0.15 +2.5
774,360 - MPMX20_00749 0.22 -1.8
774,474 + MPMX20_00749 0.31 -1.3
774,480 + MPMX20_00749 0.32 -1.1
774,483 - MPMX20_00749 0.32 -2.2
774,524 - MPMX20_00749 0.35 -4.6
774,574 + MPMX20_00749 0.39 -2.2
774,746 - MPMX20_00749 0.52 +2.4
774,790 + MPMX20_00749 0.56 -3.1
774,904 + MPMX20_00749 0.64 -0.2
775,024 + MPMX20_00749 0.74 -1.3
775,030 + MPMX20_00749 0.74 -0.7
775,032 - MPMX20_00749 0.74 -2.6
775,055 + MPMX20_00749 0.76 -3.4
775,165 + MPMX20_00749 0.85 -2.1
775,168 - MPMX20_00749 0.85 -2.5
775,298 - -2.3
775,329 + -1.2
775,396 - +4.0

Or see this region's nucleotide sequence