Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00615

Experiment: AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00614 and MPMX20_00615 are separated by 100 nucleotidesMPMX20_00615 and MPMX20_00616 are separated by 108 nucleotidesMPMX20_00616 and MPMX20_00617 overlap by 8 nucleotidesMPMX20_00617 and MPMX20_00618 overlap by 8 nucleotides MPMX20_00613: MPMX20_00613 - hypothetical protein, at 639,667 to 640,146 _00613 MPMX20_00614: MPMX20_00614 - HTH-type transcriptional regulator PgrR, at 640,133 to 641,035 _00614 MPMX20_00615: MPMX20_00615 - Putative aldehyde dehydrogenase, at 641,136 to 642,551 _00615 MPMX20_00616: MPMX20_00616 - putative protein YqjZ, at 642,660 to 642,983 _00616 MPMX20_00617: MPMX20_00617 - hypothetical protein, at 642,976 to 643,353 _00617 MPMX20_00618: MPMX20_00618 - hypothetical protein, at 643,346 to 644,041 _00618 Position (kb) 641 642 643Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 640.212 kb on - strandat 640.212 kb on - strandat 640.262 kb on + strand, within MPMX20_00614at 640.262 kb on + strand, within MPMX20_00614at 640.392 kb on - strand, within MPMX20_00614at 640.425 kb on - strand, within MPMX20_00614at 640.439 kb on - strand, within MPMX20_00614at 640.486 kb on - strand, within MPMX20_00614at 640.530 kb on + strand, within MPMX20_00614at 640.730 kb on - strand, within MPMX20_00614at 640.737 kb on - strand, within MPMX20_00614at 640.754 kb on + strand, within MPMX20_00614at 640.770 kb on + strand, within MPMX20_00614at 640.793 kb on + strand, within MPMX20_00614at 640.813 kb on + strand, within MPMX20_00614at 640.833 kb on + strand, within MPMX20_00614at 640.838 kb on + strand, within MPMX20_00614at 640.841 kb on - strand, within MPMX20_00614at 640.858 kb on + strand, within MPMX20_00614at 640.866 kb on - strand, within MPMX20_00614at 640.894 kb on + strand, within MPMX20_00614at 640.968 kb on - strandat 640.995 kb on + strandat 641.005 kb on + strandat 641.028 kb on - strandat 641.107 kb on - strandat 641.151 kb on - strandat 641.198 kb on - strandat 641.431 kb on + strand, within MPMX20_00615at 641.433 kb on + strand, within MPMX20_00615at 641.474 kb on - strand, within MPMX20_00615at 641.530 kb on + strand, within MPMX20_00615at 641.578 kb on + strand, within MPMX20_00615at 641.583 kb on + strand, within MPMX20_00615at 641.583 kb on + strand, within MPMX20_00615at 641.591 kb on - strand, within MPMX20_00615at 641.591 kb on - strand, within MPMX20_00615at 641.621 kb on + strand, within MPMX20_00615at 641.717 kb on + strand, within MPMX20_00615at 641.738 kb on + strand, within MPMX20_00615at 641.738 kb on + strand, within MPMX20_00615at 641.746 kb on - strand, within MPMX20_00615at 641.804 kb on + strand, within MPMX20_00615at 641.836 kb on - strand, within MPMX20_00615at 641.845 kb on + strand, within MPMX20_00615at 641.853 kb on - strand, within MPMX20_00615at 641.853 kb on - strand, within MPMX20_00615at 641.963 kb on + strand, within MPMX20_00615at 642.068 kb on + strand, within MPMX20_00615at 642.068 kb on + strand, within MPMX20_00615at 642.090 kb on - strand, within MPMX20_00615at 642.125 kb on + strand, within MPMX20_00615at 642.125 kb on + strand, within MPMX20_00615at 642.126 kb on + strand, within MPMX20_00615at 642.154 kb on + strand, within MPMX20_00615at 642.235 kb on - strand, within MPMX20_00615at 642.277 kb on + strand, within MPMX20_00615at 642.277 kb on + strand, within MPMX20_00615at 642.285 kb on - strand, within MPMX20_00615at 642.285 kb on - strand, within MPMX20_00615at 642.285 kb on - strand, within MPMX20_00615at 642.311 kb on + strand, within MPMX20_00615at 642.326 kb on - strand, within MPMX20_00615at 642.343 kb on + strand, within MPMX20_00615at 642.351 kb on - strand, within MPMX20_00615at 642.351 kb on - strand, within MPMX20_00615at 642.559 kb on - strandat 642.566 kb on + strandat 642.566 kb on + strandat 642.664 kb on + strandat 642.740 kb on - strand, within MPMX20_00616at 642.977 kb on + strandat 642.977 kb on + strandat 643.052 kb on + strand, within MPMX20_00617at 643.134 kb on + strand, within MPMX20_00617at 643.142 kb on - strand, within MPMX20_00617at 643.145 kb on + strand, within MPMX20_00617at 643.160 kb on - strand, within MPMX20_00617at 643.160 kb on - strand, within MPMX20_00617at 643.207 kb on - strand, within MPMX20_00617at 643.228 kb on + strand, within MPMX20_00617at 643.255 kb on - strand, within MPMX20_00617at 643.260 kb on - strand, within MPMX20_00617at 643.323 kb on + strandat 643.326 kb on - strandat 643.332 kb on + strandat 643.332 kb on + strandat 643.334 kb on - strandat 643.340 kb on - strandat 643.375 kb on - strandat 643.468 kb on + strand, within MPMX20_00618at 643.479 kb on + strand, within MPMX20_00618at 643.479 kb on + strand, within MPMX20_00618at 643.487 kb on - strand, within MPMX20_00618at 643.487 kb on - strand, within MPMX20_00618at 643.529 kb on + strand, within MPMX20_00618

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001
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640,212 - -0.3
640,212 - -3.0
640,262 + MPMX20_00614 0.14 -2.0
640,262 + MPMX20_00614 0.14 -1.0
640,392 - MPMX20_00614 0.29 -2.6
640,425 - MPMX20_00614 0.32 +0.8
640,439 - MPMX20_00614 0.34 -3.2
640,486 - MPMX20_00614 0.39 -0.5
640,530 + MPMX20_00614 0.44 +1.2
640,730 - MPMX20_00614 0.66 -2.2
640,737 - MPMX20_00614 0.67 -0.7
640,754 + MPMX20_00614 0.69 -0.3
640,770 + MPMX20_00614 0.71 -2.2
640,793 + MPMX20_00614 0.73 +1.0
640,813 + MPMX20_00614 0.75 +2.0
640,833 + MPMX20_00614 0.78 -1.1
640,838 + MPMX20_00614 0.78 -0.7
640,841 - MPMX20_00614 0.78 +0.9
640,858 + MPMX20_00614 0.80 -2.3
640,866 - MPMX20_00614 0.81 +0.4
640,894 + MPMX20_00614 0.84 -0.5
640,968 - -0.7
640,995 + -1.5
641,005 + +0.9
641,028 - -1.0
641,107 - -0.7
641,151 - -1.0
641,198 - +1.0
641,431 + MPMX20_00615 0.21 +1.5
641,433 + MPMX20_00615 0.21 -2.2
641,474 - MPMX20_00615 0.24 +0.5
641,530 + MPMX20_00615 0.28 -2.1
641,578 + MPMX20_00615 0.31 -0.9
641,583 + MPMX20_00615 0.32 -3.5
641,583 + MPMX20_00615 0.32 +0.1
641,591 - MPMX20_00615 0.32 -1.1
641,591 - MPMX20_00615 0.32 +1.6
641,621 + MPMX20_00615 0.34 +2.5
641,717 + MPMX20_00615 0.41 +1.4
641,738 + MPMX20_00615 0.43 -1.9
641,738 + MPMX20_00615 0.43 +0.2
641,746 - MPMX20_00615 0.43 -2.2
641,804 + MPMX20_00615 0.47 -0.1
641,836 - MPMX20_00615 0.49 -0.9
641,845 + MPMX20_00615 0.50 -3.5
641,853 - MPMX20_00615 0.51 +0.7
641,853 - MPMX20_00615 0.51 +3.7
641,963 + MPMX20_00615 0.58 -2.9
642,068 + MPMX20_00615 0.66 +1.9
642,068 + MPMX20_00615 0.66 -3.0
642,090 - MPMX20_00615 0.67 -2.5
642,125 + MPMX20_00615 0.70 +1.3
642,125 + MPMX20_00615 0.70 +0.5
642,126 + MPMX20_00615 0.70 -0.0
642,154 + MPMX20_00615 0.72 -2.2
642,235 - MPMX20_00615 0.78 +0.2
642,277 + MPMX20_00615 0.81 +3.5
642,277 + MPMX20_00615 0.81 -1.5
642,285 - MPMX20_00615 0.81 +0.0
642,285 - MPMX20_00615 0.81 +0.1
642,285 - MPMX20_00615 0.81 -0.9
642,311 + MPMX20_00615 0.83 -2.3
642,326 - MPMX20_00615 0.84 -3.7
642,343 + MPMX20_00615 0.85 -1.3
642,351 - MPMX20_00615 0.86 -3.3
642,351 - MPMX20_00615 0.86 +1.7
642,559 - -3.3
642,566 + +0.3
642,566 + +1.5
642,664 + -1.7
642,740 - MPMX20_00616 0.25 +0.1
642,977 + -1.9
642,977 + +2.1
643,052 + MPMX20_00617 0.20 +0.4
643,134 + MPMX20_00617 0.42 -0.1
643,142 - MPMX20_00617 0.44 -2.0
643,145 + MPMX20_00617 0.45 +1.4
643,160 - MPMX20_00617 0.49 -1.5
643,160 - MPMX20_00617 0.49 +1.5
643,207 - MPMX20_00617 0.61 -3.2
643,228 + MPMX20_00617 0.67 -2.6
643,255 - MPMX20_00617 0.74 -1.2
643,260 - MPMX20_00617 0.75 -2.3
643,323 + -1.0
643,326 - +0.2
643,332 + +0.0
643,332 + +1.5
643,334 - -2.0
643,340 - -1.5
643,375 - -2.1
643,468 + MPMX20_00618 0.18 +1.4
643,479 + MPMX20_00618 0.19 -0.4
643,479 + MPMX20_00618 0.19 -1.0
643,487 - MPMX20_00618 0.20 +0.5
643,487 - MPMX20_00618 0.20 -4.0
643,529 + MPMX20_00618 0.26 +2.7

Or see this region's nucleotide sequence