Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00437

Experiment: AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00435 and MPMX20_00436 are separated by 10 nucleotidesMPMX20_00436 and MPMX20_00437 overlap by 8 nucleotidesMPMX20_00437 and MPMX20_00438 are separated by 310 nucleotides MPMX20_00435: MPMX20_00435 - Fumarate reductase subunit C, at 447,919 to 448,314 _00435 MPMX20_00436: MPMX20_00436 - Fumarate reductase iron-sulfur subunit, at 448,325 to 449,059 _00436 MPMX20_00437: MPMX20_00437 - Fumarate reductase flavoprotein subunit, at 449,052 to 450,842 _00437 MPMX20_00438: MPMX20_00438 - Elongation factor P--(R)-beta-lysine ligase, at 451,153 to 452,130 _00438 Position (kb) 449 450 451Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 448.137 kb on + strand, within MPMX20_00435at 448.186 kb on - strand, within MPMX20_00435at 448.194 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.241 kb on - strand, within MPMX20_00435at 448.241 kb on - strand, within MPMX20_00435at 448.241 kb on - strand, within MPMX20_00435at 448.278 kb on - strandat 448.296 kb on - strandat 448.333 kb on + strandat 448.333 kb on + strandat 448.379 kb on - strandat 448.379 kb on - strandat 448.389 kb on - strandat 448.420 kb on + strand, within MPMX20_00436at 448.428 kb on - strand, within MPMX20_00436at 448.468 kb on - strand, within MPMX20_00436at 448.501 kb on + strand, within MPMX20_00436at 448.511 kb on + strand, within MPMX20_00436at 448.516 kb on + strand, within MPMX20_00436at 448.526 kb on - strand, within MPMX20_00436at 448.558 kb on + strand, within MPMX20_00436at 448.598 kb on - strand, within MPMX20_00436at 448.600 kb on + strand, within MPMX20_00436at 448.603 kb on - strand, within MPMX20_00436at 448.603 kb on - strand, within MPMX20_00436at 448.608 kb on - strand, within MPMX20_00436at 448.651 kb on + strand, within MPMX20_00436at 448.659 kb on + strand, within MPMX20_00436at 448.772 kb on - strand, within MPMX20_00436at 448.788 kb on + strand, within MPMX20_00436at 448.805 kb on - strand, within MPMX20_00436at 448.912 kb on + strand, within MPMX20_00436at 448.999 kb on - strandat 449.011 kb on - strandat 449.146 kb on - strandat 449.176 kb on + strandat 449.180 kb on + strandat 449.226 kb on + strandat 449.226 kb on + strandat 449.285 kb on + strand, within MPMX20_00437at 449.290 kb on - strand, within MPMX20_00437at 449.308 kb on - strand, within MPMX20_00437at 449.326 kb on + strand, within MPMX20_00437at 449.326 kb on + strand, within MPMX20_00437at 449.326 kb on + strand, within MPMX20_00437at 449.326 kb on + strand, within MPMX20_00437at 449.326 kb on + strand, within MPMX20_00437at 449.326 kb on + strand, within MPMX20_00437at 449.331 kb on + strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.336 kb on + strand, within MPMX20_00437at 449.336 kb on + strand, within MPMX20_00437at 449.339 kb on - strand, within MPMX20_00437at 449.344 kb on - strand, within MPMX20_00437at 449.344 kb on - strand, within MPMX20_00437at 449.349 kb on - strand, within MPMX20_00437at 449.429 kb on + strand, within MPMX20_00437at 449.429 kb on + strand, within MPMX20_00437at 449.429 kb on + strand, within MPMX20_00437at 449.437 kb on - strand, within MPMX20_00437at 449.437 kb on - strand, within MPMX20_00437at 449.437 kb on - strand, within MPMX20_00437at 449.507 kb on - strand, within MPMX20_00437at 449.528 kb on - strand, within MPMX20_00437at 449.593 kb on - strand, within MPMX20_00437at 449.677 kb on + strand, within MPMX20_00437at 449.682 kb on + strand, within MPMX20_00437at 449.744 kb on + strand, within MPMX20_00437at 449.755 kb on - strand, within MPMX20_00437at 449.824 kb on + strand, within MPMX20_00437at 449.894 kb on + strand, within MPMX20_00437at 449.894 kb on + strand, within MPMX20_00437at 449.894 kb on + strand, within MPMX20_00437at 449.894 kb on + strand, within MPMX20_00437at 449.894 kb on + strand, within MPMX20_00437at 449.902 kb on - strand, within MPMX20_00437at 449.902 kb on - strand, within MPMX20_00437at 449.902 kb on - strand, within MPMX20_00437at 449.902 kb on - strand, within MPMX20_00437at 449.902 kb on - strand, within MPMX20_00437at 449.902 kb on - strand, within MPMX20_00437at 449.914 kb on - strand, within MPMX20_00437at 449.931 kb on + strand, within MPMX20_00437at 449.937 kb on + strand, within MPMX20_00437at 449.939 kb on - strand, within MPMX20_00437at 449.993 kb on - strand, within MPMX20_00437at 450.023 kb on + strand, within MPMX20_00437at 450.102 kb on + strand, within MPMX20_00437at 450.142 kb on + strand, within MPMX20_00437at 450.161 kb on + strand, within MPMX20_00437at 450.268 kb on + strand, within MPMX20_00437at 450.268 kb on + strand, within MPMX20_00437at 450.270 kb on + strand, within MPMX20_00437at 450.334 kb on - strand, within MPMX20_00437at 450.414 kb on + strand, within MPMX20_00437at 450.415 kb on + strand, within MPMX20_00437at 450.415 kb on + strand, within MPMX20_00437at 450.423 kb on - strand, within MPMX20_00437at 450.423 kb on - strand, within MPMX20_00437at 450.423 kb on - strand, within MPMX20_00437at 450.463 kb on + strand, within MPMX20_00437at 450.531 kb on + strand, within MPMX20_00437at 450.538 kb on + strand, within MPMX20_00437at 450.538 kb on + strand, within MPMX20_00437at 450.546 kb on - strand, within MPMX20_00437at 450.548 kb on + strand, within MPMX20_00437at 450.548 kb on + strand, within MPMX20_00437at 450.556 kb on - strand, within MPMX20_00437at 450.556 kb on - strand, within MPMX20_00437at 450.571 kb on + strand, within MPMX20_00437at 450.579 kb on - strand, within MPMX20_00437at 450.579 kb on - strand, within MPMX20_00437at 450.579 kb on - strand, within MPMX20_00437at 450.660 kb on + strand, within MPMX20_00437at 450.674 kb on - strandat 450.704 kb on + strandat 450.729 kb on - strandat 450.786 kb on + strandat 450.884 kb on - strandat 451.056 kb on - strandat 451.111 kb on + strandat 451.119 kb on - strandat 451.121 kb on - strandat 451.829 kb on + strand, within MPMX20_00438

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001
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448,137 + MPMX20_00435 0.55 +2.3
448,186 - MPMX20_00435 0.67 -0.2
448,194 + MPMX20_00435 0.69 -2.8
448,233 + MPMX20_00435 0.79 -3.2
448,233 + MPMX20_00435 0.79 -3.1
448,233 + MPMX20_00435 0.79 +1.7
448,233 + MPMX20_00435 0.79 -1.1
448,233 + MPMX20_00435 0.79 +2.3
448,241 - MPMX20_00435 0.81 +2.2
448,241 - MPMX20_00435 0.81 +1.5
448,241 - MPMX20_00435 0.81 +2.3
448,278 - -1.4
448,296 - +1.9
448,333 + -3.9
448,333 + +1.6
448,379 - -0.1
448,379 - -2.7
448,389 - +3.6
448,420 + MPMX20_00436 0.13 -3.8
448,428 - MPMX20_00436 0.14 +0.3
448,468 - MPMX20_00436 0.19 +0.1
448,501 + MPMX20_00436 0.24 +0.3
448,511 + MPMX20_00436 0.25 +1.2
448,516 + MPMX20_00436 0.26 +2.5
448,526 - MPMX20_00436 0.27 +1.5
448,558 + MPMX20_00436 0.32 +4.0
448,598 - MPMX20_00436 0.37 +1.2
448,600 + MPMX20_00436 0.37 +0.8
448,603 - MPMX20_00436 0.38 +0.2
448,603 - MPMX20_00436 0.38 +1.8
448,608 - MPMX20_00436 0.39 +1.8
448,651 + MPMX20_00436 0.44 -1.3
448,659 + MPMX20_00436 0.45 -2.3
448,772 - MPMX20_00436 0.61 -1.0
448,788 + MPMX20_00436 0.63 -2.2
448,805 - MPMX20_00436 0.65 -1.4
448,912 + MPMX20_00436 0.80 +0.9
448,999 - +2.2
449,011 - -2.4
449,146 - +0.5
449,176 + -0.6
449,180 + -2.2
449,226 + -1.6
449,226 + +0.7
449,285 + MPMX20_00437 0.13 -2.2
449,290 - MPMX20_00437 0.13 -2.9
449,308 - MPMX20_00437 0.14 +0.9
449,326 + MPMX20_00437 0.15 -1.4
449,326 + MPMX20_00437 0.15 +1.9
449,326 + MPMX20_00437 0.15 +2.4
449,326 + MPMX20_00437 0.15 -2.3
449,326 + MPMX20_00437 0.15 +1.0
449,326 + MPMX20_00437 0.15 -1.1
449,331 + MPMX20_00437 0.16 -1.7
449,334 - MPMX20_00437 0.16 -4.1
449,334 - MPMX20_00437 0.16 +2.1
449,334 - MPMX20_00437 0.16 +0.5
449,334 - MPMX20_00437 0.16 +0.7
449,334 - MPMX20_00437 0.16 +1.2
449,334 - MPMX20_00437 0.16 +1.5
449,334 - MPMX20_00437 0.16 +1.2
449,334 - MPMX20_00437 0.16 +0.7
449,334 - MPMX20_00437 0.16 +1.5
449,336 + MPMX20_00437 0.16 -2.7
449,336 + MPMX20_00437 0.16 +1.8
449,339 - MPMX20_00437 0.16 +0.1
449,344 - MPMX20_00437 0.16 -1.6
449,344 - MPMX20_00437 0.16 +1.9
449,349 - MPMX20_00437 0.17 +0.2
449,429 + MPMX20_00437 0.21 -1.8
449,429 + MPMX20_00437 0.21 -1.2
449,429 + MPMX20_00437 0.21 +2.6
449,437 - MPMX20_00437 0.21 -2.4
449,437 - MPMX20_00437 0.21 -0.1
449,437 - MPMX20_00437 0.21 +1.4
449,507 - MPMX20_00437 0.25 +0.6
449,528 - MPMX20_00437 0.27 -2.5
449,593 - MPMX20_00437 0.30 +1.5
449,677 + MPMX20_00437 0.35 -0.0
449,682 + MPMX20_00437 0.35 +0.3
449,744 + MPMX20_00437 0.39 +2.7
449,755 - MPMX20_00437 0.39 -2.2
449,824 + MPMX20_00437 0.43 +2.1
449,894 + MPMX20_00437 0.47 +1.0
449,894 + MPMX20_00437 0.47 -2.9
449,894 + MPMX20_00437 0.47 +0.8
449,894 + MPMX20_00437 0.47 -2.4
449,894 + MPMX20_00437 0.47 +0.5
449,902 - MPMX20_00437 0.47 +0.8
449,902 - MPMX20_00437 0.47 +2.4
449,902 - MPMX20_00437 0.47 -0.0
449,902 - MPMX20_00437 0.47 -2.1
449,902 - MPMX20_00437 0.47 -3.1
449,902 - MPMX20_00437 0.47 +0.6
449,914 - MPMX20_00437 0.48 -0.8
449,931 + MPMX20_00437 0.49 -1.0
449,937 + MPMX20_00437 0.49 -3.9
449,939 - MPMX20_00437 0.50 -0.3
449,993 - MPMX20_00437 0.53 -0.7
450,023 + MPMX20_00437 0.54 -4.7
450,102 + MPMX20_00437 0.59 +2.3
450,142 + MPMX20_00437 0.61 +1.9
450,161 + MPMX20_00437 0.62 -2.2
450,268 + MPMX20_00437 0.68 +1.4
450,268 + MPMX20_00437 0.68 -2.7
450,270 + MPMX20_00437 0.68 +1.6
450,334 - MPMX20_00437 0.72 -0.8
450,414 + MPMX20_00437 0.76 +0.8
450,415 + MPMX20_00437 0.76 -0.6
450,415 + MPMX20_00437 0.76 +0.6
450,423 - MPMX20_00437 0.77 -1.2
450,423 - MPMX20_00437 0.77 +2.5
450,423 - MPMX20_00437 0.77 -2.1
450,463 + MPMX20_00437 0.79 -3.4
450,531 + MPMX20_00437 0.83 +1.3
450,538 + MPMX20_00437 0.83 -1.0
450,538 + MPMX20_00437 0.83 +2.1
450,546 - MPMX20_00437 0.83 -0.2
450,548 + MPMX20_00437 0.84 +0.1
450,548 + MPMX20_00437 0.84 +0.2
450,556 - MPMX20_00437 0.84 +1.5
450,556 - MPMX20_00437 0.84 -2.7
450,571 + MPMX20_00437 0.85 -2.1
450,579 - MPMX20_00437 0.85 -1.4
450,579 - MPMX20_00437 0.85 +1.5
450,579 - MPMX20_00437 0.85 -2.5
450,660 + MPMX20_00437 0.90 -2.6
450,674 - -3.0
450,704 + +0.2
450,729 - +0.5
450,786 + +0.9
450,884 - -2.5
451,056 - -1.9
451,111 + -1.6
451,119 - +1.4
451,121 - -0.7
451,829 + MPMX20_00438 0.69 -0.3

Or see this region's nucleotide sequence