Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03385

Experiment: AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03384 and MPMX20_03385 are separated by 0 nucleotidesMPMX20_03385 and MPMX20_03386 overlap by 4 nucleotidesMPMX20_03386 and MPMX20_03387 are separated by 52 nucleotides MPMX20_03384: MPMX20_03384 - Protease PrtS, at 3,564,295 to 3,565,314 _03384 MPMX20_03385: MPMX20_03385 - hypothetical protein, at 3,565,315 to 3,565,665 _03385 MPMX20_03386: MPMX20_03386 - putative protein YfgJ, at 3,565,662 to 3,565,883 _03386 MPMX20_03387: MPMX20_03387 - hypothetical protein, at 3,565,936 to 3,566,970 _03387 Position (kb) 3565 3566Strain fitness (log2 ratio) -2 -1 0 1 2at 3564.321 kb on + strandat 3564.353 kb on + strandat 3564.364 kb on + strandat 3564.379 kb on + strandat 3564.413 kb on + strand, within MPMX20_03384at 3564.431 kb on - strand, within MPMX20_03384at 3564.501 kb on + strand, within MPMX20_03384at 3564.517 kb on - strand, within MPMX20_03384at 3564.642 kb on + strand, within MPMX20_03384at 3564.646 kb on - strand, within MPMX20_03384at 3564.661 kb on - strand, within MPMX20_03384at 3564.709 kb on - strand, within MPMX20_03384at 3564.790 kb on - strand, within MPMX20_03384at 3564.796 kb on - strand, within MPMX20_03384at 3564.811 kb on - strand, within MPMX20_03384at 3564.826 kb on - strand, within MPMX20_03384at 3564.873 kb on + strand, within MPMX20_03384at 3564.881 kb on - strand, within MPMX20_03384at 3564.975 kb on - strand, within MPMX20_03384at 3564.999 kb on - strand, within MPMX20_03384at 3565.008 kb on + strand, within MPMX20_03384at 3565.026 kb on + strand, within MPMX20_03384at 3565.088 kb on - strand, within MPMX20_03384at 3565.156 kb on + strand, within MPMX20_03384at 3565.164 kb on - strand, within MPMX20_03384at 3565.339 kb on + strandat 3565.414 kb on - strand, within MPMX20_03385at 3565.414 kb on - strand, within MPMX20_03385at 3565.500 kb on - strand, within MPMX20_03385at 3565.513 kb on - strand, within MPMX20_03385at 3565.560 kb on + strand, within MPMX20_03385at 3565.570 kb on - strand, within MPMX20_03385at 3565.618 kb on - strand, within MPMX20_03385at 3565.650 kb on - strandat 3565.674 kb on - strandat 3565.813 kb on - strand, within MPMX20_03386at 3565.908 kb on + strandat 3565.932 kb on + strandat 3565.945 kb on - strandat 3565.945 kb on - strandat 3565.961 kb on - strandat 3565.967 kb on - strandat 3566.038 kb on - strandat 3566.064 kb on + strand, within MPMX20_03387at 3566.064 kb on + strand, within MPMX20_03387at 3566.064 kb on + strand, within MPMX20_03387at 3566.066 kb on + strand, within MPMX20_03387at 3566.072 kb on - strand, within MPMX20_03387at 3566.072 kb on - strand, within MPMX20_03387at 3566.072 kb on - strand, within MPMX20_03387at 3566.102 kb on - strand, within MPMX20_03387at 3566.287 kb on + strand, within MPMX20_03387at 3566.436 kb on - strand, within MPMX20_03387at 3566.465 kb on - strand, within MPMX20_03387at 3566.488 kb on + strand, within MPMX20_03387at 3566.579 kb on + strand, within MPMX20_03387

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.01
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3,564,321 + -2.2
3,564,353 + +0.5
3,564,364 + +1.6
3,564,379 + -1.4
3,564,413 + MPMX20_03384 0.12 -1.0
3,564,431 - MPMX20_03384 0.13 -0.3
3,564,501 + MPMX20_03384 0.20 -0.3
3,564,517 - MPMX20_03384 0.22 -0.8
3,564,642 + MPMX20_03384 0.34 +0.9
3,564,646 - MPMX20_03384 0.34 -0.0
3,564,661 - MPMX20_03384 0.36 +0.6
3,564,709 - MPMX20_03384 0.41 +0.8
3,564,790 - MPMX20_03384 0.49 +0.8
3,564,796 - MPMX20_03384 0.49 +1.2
3,564,811 - MPMX20_03384 0.51 -0.2
3,564,826 - MPMX20_03384 0.52 -0.7
3,564,873 + MPMX20_03384 0.57 +0.1
3,564,881 - MPMX20_03384 0.57 +0.3
3,564,975 - MPMX20_03384 0.67 +0.8
3,564,999 - MPMX20_03384 0.69 +0.6
3,565,008 + MPMX20_03384 0.70 +0.7
3,565,026 + MPMX20_03384 0.72 +1.1
3,565,088 - MPMX20_03384 0.78 -1.7
3,565,156 + MPMX20_03384 0.84 -1.8
3,565,164 - MPMX20_03384 0.85 +1.1
3,565,339 + +0.1
3,565,414 - MPMX20_03385 0.28 +0.5
3,565,414 - MPMX20_03385 0.28 +0.7
3,565,500 - MPMX20_03385 0.53 +0.7
3,565,513 - MPMX20_03385 0.56 +1.3
3,565,560 + MPMX20_03385 0.70 +1.7
3,565,570 - MPMX20_03385 0.73 +0.6
3,565,618 - MPMX20_03385 0.86 +1.8
3,565,650 - +0.9
3,565,674 - +0.4
3,565,813 - MPMX20_03386 0.68 +0.4
3,565,908 + +0.1
3,565,932 + -0.8
3,565,945 - +1.0
3,565,945 - +0.2
3,565,961 - +0.0
3,565,967 - +0.5
3,566,038 - -0.0
3,566,064 + MPMX20_03387 0.12 +0.1
3,566,064 + MPMX20_03387 0.12 -0.5
3,566,064 + MPMX20_03387 0.12 +0.7
3,566,066 + MPMX20_03387 0.13 -0.2
3,566,072 - MPMX20_03387 0.13 -0.0
3,566,072 - MPMX20_03387 0.13 -1.9
3,566,072 - MPMX20_03387 0.13 -0.9
3,566,102 - MPMX20_03387 0.16 +0.2
3,566,287 + MPMX20_03387 0.34 +0.0
3,566,436 - MPMX20_03387 0.48 -0.2
3,566,465 - MPMX20_03387 0.51 +2.5
3,566,488 + MPMX20_03387 0.53 +1.5
3,566,579 + MPMX20_03387 0.62 +1.3

Or see this region's nucleotide sequence