Experiment: AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03384 and MPMX20_03385 are separated by 0 nucleotides MPMX20_03385 and MPMX20_03386 overlap by 4 nucleotides MPMX20_03386 and MPMX20_03387 are separated by 52 nucleotides
MPMX20_03384: MPMX20_03384 - Protease PrtS, at 3,564,295 to 3,565,314
_03384
MPMX20_03385: MPMX20_03385 - hypothetical protein, at 3,565,315 to 3,565,665
_03385
MPMX20_03386: MPMX20_03386 - putative protein YfgJ, at 3,565,662 to 3,565,883
_03386
MPMX20_03387: MPMX20_03387 - hypothetical protein, at 3,565,936 to 3,566,970
_03387
Position (kb)
3565
3566 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3564.321 kb on + strand at 3564.353 kb on + strand at 3564.364 kb on + strand at 3564.379 kb on + strand at 3564.413 kb on + strand, within MPMX20_03384 at 3564.431 kb on - strand, within MPMX20_03384 at 3564.501 kb on + strand, within MPMX20_03384 at 3564.517 kb on - strand, within MPMX20_03384 at 3564.642 kb on + strand, within MPMX20_03384 at 3564.646 kb on - strand, within MPMX20_03384 at 3564.661 kb on - strand, within MPMX20_03384 at 3564.709 kb on - strand, within MPMX20_03384 at 3564.790 kb on - strand, within MPMX20_03384 at 3564.796 kb on - strand, within MPMX20_03384 at 3564.811 kb on - strand, within MPMX20_03384 at 3564.826 kb on - strand, within MPMX20_03384 at 3564.873 kb on + strand, within MPMX20_03384 at 3564.881 kb on - strand, within MPMX20_03384 at 3564.975 kb on - strand, within MPMX20_03384 at 3564.999 kb on - strand, within MPMX20_03384 at 3565.008 kb on + strand, within MPMX20_03384 at 3565.026 kb on + strand, within MPMX20_03384 at 3565.088 kb on - strand, within MPMX20_03384 at 3565.156 kb on + strand, within MPMX20_03384 at 3565.164 kb on - strand, within MPMX20_03384 at 3565.339 kb on + strand at 3565.414 kb on - strand, within MPMX20_03385 at 3565.414 kb on - strand, within MPMX20_03385 at 3565.500 kb on - strand, within MPMX20_03385 at 3565.513 kb on - strand, within MPMX20_03385 at 3565.560 kb on + strand, within MPMX20_03385 at 3565.570 kb on - strand, within MPMX20_03385 at 3565.618 kb on - strand, within MPMX20_03385 at 3565.650 kb on - strand at 3565.674 kb on - strand at 3565.813 kb on - strand, within MPMX20_03386 at 3565.908 kb on + strand at 3565.932 kb on + strand at 3565.945 kb on - strand at 3565.945 kb on - strand at 3565.961 kb on - strand at 3565.967 kb on - strand at 3566.038 kb on - strand at 3566.064 kb on + strand, within MPMX20_03387 at 3566.064 kb on + strand, within MPMX20_03387 at 3566.064 kb on + strand, within MPMX20_03387 at 3566.066 kb on + strand, within MPMX20_03387 at 3566.072 kb on - strand, within MPMX20_03387 at 3566.072 kb on - strand, within MPMX20_03387 at 3566.072 kb on - strand, within MPMX20_03387 at 3566.102 kb on - strand, within MPMX20_03387 at 3566.287 kb on + strand, within MPMX20_03387 at 3566.436 kb on - strand, within MPMX20_03387 at 3566.465 kb on - strand, within MPMX20_03387 at 3566.488 kb on + strand, within MPMX20_03387 at 3566.579 kb on + strand, within MPMX20_03387
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.01 remove 3,564,321 + -2.2 3,564,353 + +0.5 3,564,364 + +1.6 3,564,379 + -1.4 3,564,413 + MPMX20_03384 0.12 -1.0 3,564,431 - MPMX20_03384 0.13 -0.3 3,564,501 + MPMX20_03384 0.20 -0.3 3,564,517 - MPMX20_03384 0.22 -0.8 3,564,642 + MPMX20_03384 0.34 +0.9 3,564,646 - MPMX20_03384 0.34 -0.0 3,564,661 - MPMX20_03384 0.36 +0.6 3,564,709 - MPMX20_03384 0.41 +0.8 3,564,790 - MPMX20_03384 0.49 +0.8 3,564,796 - MPMX20_03384 0.49 +1.2 3,564,811 - MPMX20_03384 0.51 -0.2 3,564,826 - MPMX20_03384 0.52 -0.7 3,564,873 + MPMX20_03384 0.57 +0.1 3,564,881 - MPMX20_03384 0.57 +0.3 3,564,975 - MPMX20_03384 0.67 +0.8 3,564,999 - MPMX20_03384 0.69 +0.6 3,565,008 + MPMX20_03384 0.70 +0.7 3,565,026 + MPMX20_03384 0.72 +1.1 3,565,088 - MPMX20_03384 0.78 -1.7 3,565,156 + MPMX20_03384 0.84 -1.8 3,565,164 - MPMX20_03384 0.85 +1.1 3,565,339 + +0.1 3,565,414 - MPMX20_03385 0.28 +0.5 3,565,414 - MPMX20_03385 0.28 +0.7 3,565,500 - MPMX20_03385 0.53 +0.7 3,565,513 - MPMX20_03385 0.56 +1.3 3,565,560 + MPMX20_03385 0.70 +1.7 3,565,570 - MPMX20_03385 0.73 +0.6 3,565,618 - MPMX20_03385 0.86 +1.8 3,565,650 - +0.9 3,565,674 - +0.4 3,565,813 - MPMX20_03386 0.68 +0.4 3,565,908 + +0.1 3,565,932 + -0.8 3,565,945 - +1.0 3,565,945 - +0.2 3,565,961 - +0.0 3,565,967 - +0.5 3,566,038 - -0.0 3,566,064 + MPMX20_03387 0.12 +0.1 3,566,064 + MPMX20_03387 0.12 -0.5 3,566,064 + MPMX20_03387 0.12 +0.7 3,566,066 + MPMX20_03387 0.13 -0.2 3,566,072 - MPMX20_03387 0.13 -0.0 3,566,072 - MPMX20_03387 0.13 -1.9 3,566,072 - MPMX20_03387 0.13 -0.9 3,566,102 - MPMX20_03387 0.16 +0.2 3,566,287 + MPMX20_03387 0.34 +0.0 3,566,436 - MPMX20_03387 0.48 -0.2 3,566,465 - MPMX20_03387 0.51 +2.5 3,566,488 + MPMX20_03387 0.53 +1.5 3,566,579 + MPMX20_03387 0.62 +1.3
Or see this region's nucleotide sequence