Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04495

Experiment: AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04494 and MPMX20_04495 are separated by 85 nucleotidesMPMX20_04495 and MPMX20_04496 are separated by 68 nucleotides MPMX20_04494: MPMX20_04494 - ATP-dependent DNA helicase Rep, at 4,699,694 to 4,701,718 _04494 MPMX20_04495: MPMX20_04495 - Peptidyl-prolyl cis-trans isomerase C, at 4,701,804 to 4,702,085 _04495 MPMX20_04496: MPMX20_04496 - Ketol-acid reductoisomerase (NADP(+)), at 4,702,154 to 4,703,629 _04496 Position (kb) 4701 4702 4703Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4701.748 kb on + strandat 4701.748 kb on + strandat 4701.756 kb on - strandat 4701.766 kb on - strandat 4701.775 kb on + strandat 4701.779 kb on + strandat 4701.782 kb on - strandat 4701.830 kb on - strandat 4701.855 kb on + strand, within MPMX20_04495at 4701.855 kb on + strand, within MPMX20_04495at 4701.933 kb on + strand, within MPMX20_04495at 4701.978 kb on - strand, within MPMX20_04495at 4701.999 kb on + strand, within MPMX20_04495at 4702.024 kb on - strand, within MPMX20_04495at 4702.025 kb on + strand, within MPMX20_04495at 4702.068 kb on + strandat 4702.092 kb on + strandat 4702.100 kb on - strandat 4702.103 kb on + strandat 4702.118 kb on + strandat 4702.128 kb on + strandat 4702.136 kb on - strandat 4702.158 kb on - strandat 4702.159 kb on - strandat 4702.353 kb on + strand, within MPMX20_04496at 4702.367 kb on - strand, within MPMX20_04496at 4702.571 kb on - strand, within MPMX20_04496at 4702.633 kb on + strand, within MPMX20_04496at 4702.633 kb on + strand, within MPMX20_04496at 4702.633 kb on + strand, within MPMX20_04496at 4702.633 kb on + strand, within MPMX20_04496at 4702.684 kb on + strand, within MPMX20_04496at 4702.886 kb on + strand, within MPMX20_04496at 4702.983 kb on + strand, within MPMX20_04496at 4702.991 kb on - strand, within MPMX20_04496at 4703.069 kb on + strand, within MPMX20_04496at 4703.071 kb on - strand, within MPMX20_04496

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001
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4,701,748 + +2.3
4,701,748 + +1.6
4,701,756 - -1.7
4,701,766 - +1.5
4,701,775 + -0.7
4,701,779 + +0.4
4,701,782 - +1.0
4,701,830 - -0.1
4,701,855 + MPMX20_04495 0.18 +0.0
4,701,855 + MPMX20_04495 0.18 -1.3
4,701,933 + MPMX20_04495 0.46 +2.4
4,701,978 - MPMX20_04495 0.62 +1.9
4,701,999 + MPMX20_04495 0.69 +1.2
4,702,024 - MPMX20_04495 0.78 +2.4
4,702,025 + MPMX20_04495 0.78 -1.7
4,702,068 + +0.2
4,702,092 + +1.9
4,702,100 - -3.2
4,702,103 + +2.8
4,702,118 + -1.8
4,702,128 + -2.7
4,702,136 - +0.8
4,702,158 - +1.2
4,702,159 - +0.3
4,702,353 + MPMX20_04496 0.13 -0.3
4,702,367 - MPMX20_04496 0.14 +0.7
4,702,571 - MPMX20_04496 0.28 -0.2
4,702,633 + MPMX20_04496 0.32 +1.5
4,702,633 + MPMX20_04496 0.32 -2.7
4,702,633 + MPMX20_04496 0.32 -1.8
4,702,633 + MPMX20_04496 0.32 +0.5
4,702,684 + MPMX20_04496 0.36 -1.5
4,702,886 + MPMX20_04496 0.50 -1.3
4,702,983 + MPMX20_04496 0.56 -0.3
4,702,991 - MPMX20_04496 0.57 -1.6
4,703,069 + MPMX20_04496 0.62 -1.7
4,703,071 - MPMX20_04496 0.62 +1.2

Or see this region's nucleotide sequence