Experiment: AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04494 and MPMX20_04495 are separated by 85 nucleotides MPMX20_04495 and MPMX20_04496 are separated by 68 nucleotides
MPMX20_04494: MPMX20_04494 - ATP-dependent DNA helicase Rep, at 4,699,694 to 4,701,718
_04494
MPMX20_04495: MPMX20_04495 - Peptidyl-prolyl cis-trans isomerase C, at 4,701,804 to 4,702,085
_04495
MPMX20_04496: MPMX20_04496 - Ketol-acid reductoisomerase (NADP(+)), at 4,702,154 to 4,703,629
_04496
Position (kb)
4701
4702
4703 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4701.748 kb on + strand at 4701.748 kb on + strand at 4701.756 kb on - strand at 4701.766 kb on - strand at 4701.775 kb on + strand at 4701.779 kb on + strand at 4701.782 kb on - strand at 4701.830 kb on - strand at 4701.855 kb on + strand, within MPMX20_04495 at 4701.855 kb on + strand, within MPMX20_04495 at 4701.933 kb on + strand, within MPMX20_04495 at 4701.978 kb on - strand, within MPMX20_04495 at 4701.999 kb on + strand, within MPMX20_04495 at 4702.024 kb on - strand, within MPMX20_04495 at 4702.025 kb on + strand, within MPMX20_04495 at 4702.068 kb on + strand at 4702.092 kb on + strand at 4702.100 kb on - strand at 4702.103 kb on + strand at 4702.118 kb on + strand at 4702.128 kb on + strand at 4702.136 kb on - strand at 4702.158 kb on - strand at 4702.159 kb on - strand at 4702.353 kb on + strand, within MPMX20_04496 at 4702.367 kb on - strand, within MPMX20_04496 at 4702.571 kb on - strand, within MPMX20_04496 at 4702.633 kb on + strand, within MPMX20_04496 at 4702.633 kb on + strand, within MPMX20_04496 at 4702.633 kb on + strand, within MPMX20_04496 at 4702.633 kb on + strand, within MPMX20_04496 at 4702.684 kb on + strand, within MPMX20_04496 at 4702.886 kb on + strand, within MPMX20_04496 at 4702.983 kb on + strand, within MPMX20_04496 at 4702.991 kb on - strand, within MPMX20_04496 at 4703.069 kb on + strand, within MPMX20_04496 at 4703.071 kb on - strand, within MPMX20_04496
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001 remove 4,701,748 + +2.3 4,701,748 + +1.6 4,701,756 - -1.7 4,701,766 - +1.5 4,701,775 + -0.7 4,701,779 + +0.4 4,701,782 - +1.0 4,701,830 - -0.1 4,701,855 + MPMX20_04495 0.18 +0.0 4,701,855 + MPMX20_04495 0.18 -1.3 4,701,933 + MPMX20_04495 0.46 +2.4 4,701,978 - MPMX20_04495 0.62 +1.9 4,701,999 + MPMX20_04495 0.69 +1.2 4,702,024 - MPMX20_04495 0.78 +2.4 4,702,025 + MPMX20_04495 0.78 -1.7 4,702,068 + +0.2 4,702,092 + +1.9 4,702,100 - -3.2 4,702,103 + +2.8 4,702,118 + -1.8 4,702,128 + -2.7 4,702,136 - +0.8 4,702,158 - +1.2 4,702,159 - +0.3 4,702,353 + MPMX20_04496 0.13 -0.3 4,702,367 - MPMX20_04496 0.14 +0.7 4,702,571 - MPMX20_04496 0.28 -0.2 4,702,633 + MPMX20_04496 0.32 +1.5 4,702,633 + MPMX20_04496 0.32 -2.7 4,702,633 + MPMX20_04496 0.32 -1.8 4,702,633 + MPMX20_04496 0.32 +0.5 4,702,684 + MPMX20_04496 0.36 -1.5 4,702,886 + MPMX20_04496 0.50 -1.3 4,702,983 + MPMX20_04496 0.56 -0.3 4,702,991 - MPMX20_04496 0.57 -1.6 4,703,069 + MPMX20_04496 0.62 -1.7 4,703,071 - MPMX20_04496 0.62 +1.2
Or see this region's nucleotide sequence