Experiment: AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01310 and MPMX20_01311 are separated by 164 nucleotides MPMX20_01311 and MPMX20_01312 are separated by 136 nucleotides
MPMX20_01310: MPMX20_01310 - PhoH-like protein, at 1,371,124 to 1,372,170
_01310
MPMX20_01311: MPMX20_01311 - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase, at 1,372,335 to 1,373,759
_01311
MPMX20_01312: MPMX20_01312 - 3-demethoxyubiquinol 3-hydroxylase, at 1,373,896 to 1,375,071
_01312
Position (kb)
1372
1373
1374 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1371.345 kb on + strand, within MPMX20_01310 at 1371.479 kb on - strand, within MPMX20_01310 at 1371.479 kb on - strand, within MPMX20_01310 at 1371.564 kb on - strand, within MPMX20_01310 at 1371.598 kb on - strand, within MPMX20_01310 at 1371.599 kb on - strand, within MPMX20_01310 at 1371.639 kb on - strand, within MPMX20_01310 at 1371.656 kb on - strand, within MPMX20_01310 at 1371.666 kb on - strand, within MPMX20_01310 at 1371.867 kb on - strand, within MPMX20_01310 at 1371.890 kb on - strand, within MPMX20_01310 at 1371.977 kb on - strand, within MPMX20_01310 at 1372.172 kb on + strand at 1372.174 kb on + strand at 1372.252 kb on + strand at 1372.252 kb on + strand at 1372.252 kb on + strand at 1372.260 kb on - strand at 1372.267 kb on - strand at 1372.288 kb on - strand at 1372.288 kb on - strand at 1372.332 kb on + strand at 1372.340 kb on - strand at 1372.428 kb on - strand at 1372.459 kb on + strand at 1372.459 kb on + strand at 1372.467 kb on - strand at 1372.508 kb on + strand, within MPMX20_01311 at 1372.508 kb on + strand, within MPMX20_01311 at 1372.516 kb on - strand, within MPMX20_01311 at 1372.552 kb on + strand, within MPMX20_01311 at 1372.570 kb on - strand, within MPMX20_01311 at 1372.612 kb on + strand, within MPMX20_01311 at 1372.620 kb on - strand, within MPMX20_01311 at 1372.620 kb on - strand, within MPMX20_01311 at 1372.638 kb on - strand, within MPMX20_01311 at 1372.644 kb on - strand, within MPMX20_01311 at 1372.654 kb on + strand, within MPMX20_01311 at 1372.658 kb on - strand, within MPMX20_01311 at 1372.726 kb on + strand, within MPMX20_01311 at 1372.727 kb on - strand, within MPMX20_01311 at 1372.730 kb on + strand, within MPMX20_01311 at 1372.739 kb on - strand, within MPMX20_01311 at 1372.756 kb on - strand, within MPMX20_01311 at 1372.798 kb on - strand, within MPMX20_01311 at 1372.810 kb on - strand, within MPMX20_01311 at 1372.873 kb on + strand, within MPMX20_01311 at 1372.988 kb on + strand, within MPMX20_01311 at 1372.988 kb on + strand, within MPMX20_01311 at 1372.996 kb on - strand, within MPMX20_01311 at 1373.125 kb on + strand, within MPMX20_01311 at 1373.152 kb on - strand, within MPMX20_01311 at 1373.206 kb on + strand, within MPMX20_01311 at 1373.214 kb on - strand, within MPMX20_01311 at 1373.235 kb on + strand, within MPMX20_01311 at 1373.235 kb on + strand, within MPMX20_01311 at 1373.235 kb on + strand, within MPMX20_01311 at 1373.275 kb on + strand, within MPMX20_01311 at 1373.283 kb on - strand, within MPMX20_01311 at 1373.315 kb on - strand, within MPMX20_01311 at 1373.415 kb on + strand, within MPMX20_01311 at 1373.633 kb on + strand at 1373.668 kb on - strand at 1373.668 kb on - strand at 1373.668 kb on - strand at 1373.668 kb on - strand at 1373.668 kb on - strand at 1373.794 kb on + strand at 1373.820 kb on - strand at 1373.822 kb on + strand at 1373.822 kb on + strand at 1373.822 kb on + strand at 1373.822 kb on + strand at 1373.822 kb on + strand at 1373.822 kb on + strand at 1373.822 kb on + strand at 1373.822 kb on + strand at 1373.822 kb on + strand at 1373.822 kb on + strand at 1373.830 kb on - strand at 1373.830 kb on - strand at 1373.830 kb on - strand at 1373.830 kb on - strand at 1373.830 kb on - strand at 1373.838 kb on + strand at 1373.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001 remove 1,371,345 + MPMX20_01310 0.21 -0.6 1,371,479 - MPMX20_01310 0.34 +0.2 1,371,479 - MPMX20_01310 0.34 -1.0 1,371,564 - MPMX20_01310 0.42 -1.3 1,371,598 - MPMX20_01310 0.45 -3.0 1,371,599 - MPMX20_01310 0.45 -0.9 1,371,639 - MPMX20_01310 0.49 +0.2 1,371,656 - MPMX20_01310 0.51 -0.5 1,371,666 - MPMX20_01310 0.52 +0.1 1,371,867 - MPMX20_01310 0.71 -0.3 1,371,890 - MPMX20_01310 0.73 +0.4 1,371,977 - MPMX20_01310 0.81 -2.2 1,372,172 + -2.8 1,372,174 + -3.4 1,372,252 + -0.4 1,372,252 + -3.3 1,372,252 + -3.1 1,372,260 - -4.2 1,372,267 - -0.3 1,372,288 - -1.0 1,372,288 - +1.2 1,372,332 + +1.7 1,372,340 - +1.1 1,372,428 - -4.0 1,372,459 + -2.0 1,372,459 + -1.4 1,372,467 - +1.1 1,372,508 + MPMX20_01311 0.12 +0.0 1,372,508 + MPMX20_01311 0.12 +1.7 1,372,516 - MPMX20_01311 0.13 -0.1 1,372,552 + MPMX20_01311 0.15 -2.6 1,372,570 - MPMX20_01311 0.16 -0.9 1,372,612 + MPMX20_01311 0.19 -2.6 1,372,620 - MPMX20_01311 0.20 -2.4 1,372,620 - MPMX20_01311 0.20 +1.0 1,372,638 - MPMX20_01311 0.21 -1.1 1,372,644 - MPMX20_01311 0.22 +1.6 1,372,654 + MPMX20_01311 0.22 +2.0 1,372,658 - MPMX20_01311 0.23 +1.0 1,372,726 + MPMX20_01311 0.27 +0.1 1,372,727 - MPMX20_01311 0.28 -2.3 1,372,730 + MPMX20_01311 0.28 +1.7 1,372,739 - MPMX20_01311 0.28 -4.0 1,372,756 - MPMX20_01311 0.30 +0.9 1,372,798 - MPMX20_01311 0.32 +2.4 1,372,810 - MPMX20_01311 0.33 -3.6 1,372,873 + MPMX20_01311 0.38 -0.1 1,372,988 + MPMX20_01311 0.46 +1.2 1,372,988 + MPMX20_01311 0.46 -0.1 1,372,996 - MPMX20_01311 0.46 -2.5 1,373,125 + MPMX20_01311 0.55 +1.3 1,373,152 - MPMX20_01311 0.57 -1.9 1,373,206 + MPMX20_01311 0.61 +1.8 1,373,214 - MPMX20_01311 0.62 -2.5 1,373,235 + MPMX20_01311 0.63 -4.6 1,373,235 + MPMX20_01311 0.63 +0.6 1,373,235 + MPMX20_01311 0.63 +0.1 1,373,275 + MPMX20_01311 0.66 +0.6 1,373,283 - MPMX20_01311 0.67 +1.5 1,373,315 - MPMX20_01311 0.69 -0.1 1,373,415 + MPMX20_01311 0.76 +0.4 1,373,633 + +0.3 1,373,668 - -1.5 1,373,668 - +0.8 1,373,668 - -1.4 1,373,668 - +0.7 1,373,668 - -1.1 1,373,794 + +0.5 1,373,820 - +0.5 1,373,822 + -3.1 1,373,822 + -0.2 1,373,822 + +1.7 1,373,822 + +1.3 1,373,822 + -0.4 1,373,822 + -3.1 1,373,822 + +0.4 1,373,822 + +1.1 1,373,822 + -0.0 1,373,822 + -1.9 1,373,830 - +1.2 1,373,830 - +2.2 1,373,830 - -2.9 1,373,830 - +1.6 1,373,830 - +0.4 1,373,838 + +1.8 1,373,878 - -0.3
Or see this region's nucleotide sequence