Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01311

Experiment: AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01310 and MPMX20_01311 are separated by 164 nucleotidesMPMX20_01311 and MPMX20_01312 are separated by 136 nucleotides MPMX20_01310: MPMX20_01310 - PhoH-like protein, at 1,371,124 to 1,372,170 _01310 MPMX20_01311: MPMX20_01311 - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase, at 1,372,335 to 1,373,759 _01311 MPMX20_01312: MPMX20_01312 - 3-demethoxyubiquinol 3-hydroxylase, at 1,373,896 to 1,375,071 _01312 Position (kb) 1372 1373 1374Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1371.345 kb on + strand, within MPMX20_01310at 1371.479 kb on - strand, within MPMX20_01310at 1371.479 kb on - strand, within MPMX20_01310at 1371.564 kb on - strand, within MPMX20_01310at 1371.598 kb on - strand, within MPMX20_01310at 1371.599 kb on - strand, within MPMX20_01310at 1371.639 kb on - strand, within MPMX20_01310at 1371.656 kb on - strand, within MPMX20_01310at 1371.666 kb on - strand, within MPMX20_01310at 1371.867 kb on - strand, within MPMX20_01310at 1371.890 kb on - strand, within MPMX20_01310at 1371.977 kb on - strand, within MPMX20_01310at 1372.172 kb on + strandat 1372.174 kb on + strandat 1372.252 kb on + strandat 1372.252 kb on + strandat 1372.252 kb on + strandat 1372.260 kb on - strandat 1372.267 kb on - strandat 1372.288 kb on - strandat 1372.288 kb on - strandat 1372.332 kb on + strandat 1372.340 kb on - strandat 1372.428 kb on - strandat 1372.459 kb on + strandat 1372.459 kb on + strandat 1372.467 kb on - strandat 1372.508 kb on + strand, within MPMX20_01311at 1372.508 kb on + strand, within MPMX20_01311at 1372.516 kb on - strand, within MPMX20_01311at 1372.552 kb on + strand, within MPMX20_01311at 1372.570 kb on - strand, within MPMX20_01311at 1372.612 kb on + strand, within MPMX20_01311at 1372.620 kb on - strand, within MPMX20_01311at 1372.620 kb on - strand, within MPMX20_01311at 1372.638 kb on - strand, within MPMX20_01311at 1372.644 kb on - strand, within MPMX20_01311at 1372.654 kb on + strand, within MPMX20_01311at 1372.658 kb on - strand, within MPMX20_01311at 1372.726 kb on + strand, within MPMX20_01311at 1372.727 kb on - strand, within MPMX20_01311at 1372.730 kb on + strand, within MPMX20_01311at 1372.739 kb on - strand, within MPMX20_01311at 1372.756 kb on - strand, within MPMX20_01311at 1372.798 kb on - strand, within MPMX20_01311at 1372.810 kb on - strand, within MPMX20_01311at 1372.873 kb on + strand, within MPMX20_01311at 1372.988 kb on + strand, within MPMX20_01311at 1372.988 kb on + strand, within MPMX20_01311at 1372.996 kb on - strand, within MPMX20_01311at 1373.125 kb on + strand, within MPMX20_01311at 1373.152 kb on - strand, within MPMX20_01311at 1373.206 kb on + strand, within MPMX20_01311at 1373.214 kb on - strand, within MPMX20_01311at 1373.235 kb on + strand, within MPMX20_01311at 1373.235 kb on + strand, within MPMX20_01311at 1373.235 kb on + strand, within MPMX20_01311at 1373.275 kb on + strand, within MPMX20_01311at 1373.283 kb on - strand, within MPMX20_01311at 1373.315 kb on - strand, within MPMX20_01311at 1373.415 kb on + strand, within MPMX20_01311at 1373.633 kb on + strandat 1373.668 kb on - strandat 1373.668 kb on - strandat 1373.668 kb on - strandat 1373.668 kb on - strandat 1373.668 kb on - strandat 1373.794 kb on + strandat 1373.820 kb on - strandat 1373.822 kb on + strandat 1373.822 kb on + strandat 1373.822 kb on + strandat 1373.822 kb on + strandat 1373.822 kb on + strandat 1373.822 kb on + strandat 1373.822 kb on + strandat 1373.822 kb on + strandat 1373.822 kb on + strandat 1373.822 kb on + strandat 1373.830 kb on - strandat 1373.830 kb on - strandat 1373.830 kb on - strandat 1373.830 kb on - strandat 1373.830 kb on - strandat 1373.838 kb on + strandat 1373.878 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001
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1,371,345 + MPMX20_01310 0.21 -0.6
1,371,479 - MPMX20_01310 0.34 +0.2
1,371,479 - MPMX20_01310 0.34 -1.0
1,371,564 - MPMX20_01310 0.42 -1.3
1,371,598 - MPMX20_01310 0.45 -3.0
1,371,599 - MPMX20_01310 0.45 -0.9
1,371,639 - MPMX20_01310 0.49 +0.2
1,371,656 - MPMX20_01310 0.51 -0.5
1,371,666 - MPMX20_01310 0.52 +0.1
1,371,867 - MPMX20_01310 0.71 -0.3
1,371,890 - MPMX20_01310 0.73 +0.4
1,371,977 - MPMX20_01310 0.81 -2.2
1,372,172 + -2.8
1,372,174 + -3.4
1,372,252 + -0.4
1,372,252 + -3.3
1,372,252 + -3.1
1,372,260 - -4.2
1,372,267 - -0.3
1,372,288 - -1.0
1,372,288 - +1.2
1,372,332 + +1.7
1,372,340 - +1.1
1,372,428 - -4.0
1,372,459 + -2.0
1,372,459 + -1.4
1,372,467 - +1.1
1,372,508 + MPMX20_01311 0.12 +0.0
1,372,508 + MPMX20_01311 0.12 +1.7
1,372,516 - MPMX20_01311 0.13 -0.1
1,372,552 + MPMX20_01311 0.15 -2.6
1,372,570 - MPMX20_01311 0.16 -0.9
1,372,612 + MPMX20_01311 0.19 -2.6
1,372,620 - MPMX20_01311 0.20 -2.4
1,372,620 - MPMX20_01311 0.20 +1.0
1,372,638 - MPMX20_01311 0.21 -1.1
1,372,644 - MPMX20_01311 0.22 +1.6
1,372,654 + MPMX20_01311 0.22 +2.0
1,372,658 - MPMX20_01311 0.23 +1.0
1,372,726 + MPMX20_01311 0.27 +0.1
1,372,727 - MPMX20_01311 0.28 -2.3
1,372,730 + MPMX20_01311 0.28 +1.7
1,372,739 - MPMX20_01311 0.28 -4.0
1,372,756 - MPMX20_01311 0.30 +0.9
1,372,798 - MPMX20_01311 0.32 +2.4
1,372,810 - MPMX20_01311 0.33 -3.6
1,372,873 + MPMX20_01311 0.38 -0.1
1,372,988 + MPMX20_01311 0.46 +1.2
1,372,988 + MPMX20_01311 0.46 -0.1
1,372,996 - MPMX20_01311 0.46 -2.5
1,373,125 + MPMX20_01311 0.55 +1.3
1,373,152 - MPMX20_01311 0.57 -1.9
1,373,206 + MPMX20_01311 0.61 +1.8
1,373,214 - MPMX20_01311 0.62 -2.5
1,373,235 + MPMX20_01311 0.63 -4.6
1,373,235 + MPMX20_01311 0.63 +0.6
1,373,235 + MPMX20_01311 0.63 +0.1
1,373,275 + MPMX20_01311 0.66 +0.6
1,373,283 - MPMX20_01311 0.67 +1.5
1,373,315 - MPMX20_01311 0.69 -0.1
1,373,415 + MPMX20_01311 0.76 +0.4
1,373,633 + +0.3
1,373,668 - -1.5
1,373,668 - +0.8
1,373,668 - -1.4
1,373,668 - +0.7
1,373,668 - -1.1
1,373,794 + +0.5
1,373,820 - +0.5
1,373,822 + -3.1
1,373,822 + -0.2
1,373,822 + +1.7
1,373,822 + +1.3
1,373,822 + -0.4
1,373,822 + -3.1
1,373,822 + +0.4
1,373,822 + +1.1
1,373,822 + -0.0
1,373,822 + -1.9
1,373,830 - +1.2
1,373,830 - +2.2
1,373,830 - -2.9
1,373,830 - +1.6
1,373,830 - +0.4
1,373,838 + +1.8
1,373,878 - -0.3

Or see this region's nucleotide sequence