Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00700

Experiment: AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00699 and MPMX20_00700 are separated by 55 nucleotidesMPMX20_00700 and MPMX20_00701 overlap by 10 nucleotidesMPMX20_00701 and MPMX20_00702 are separated by 50 nucleotides MPMX20_00699: MPMX20_00699 - Soluble lytic murein transglycosylase, at 720,087 to 722,024 _00699 MPMX20_00700: MPMX20_00700 - Trp operon repressor, at 722,080 to 722,409 _00700 MPMX20_00701: MPMX20_00701 - Inosine/xanthosine triphosphatase, at 722,400 to 722,915 _00701 MPMX20_00702: MPMX20_00702 - Adenosylcobalamin/alpha-ribazole phosphatase, at 722,966 to 723,613 _00702 Position (kb) 722 723Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 721.160 kb on + strand, within MPMX20_00699at 721.272 kb on + strand, within MPMX20_00699at 721.397 kb on + strand, within MPMX20_00699at 721.415 kb on - strand, within MPMX20_00699at 721.416 kb on - strand, within MPMX20_00699at 721.422 kb on - strand, within MPMX20_00699at 721.455 kb on + strand, within MPMX20_00699at 721.487 kb on + strand, within MPMX20_00699at 721.487 kb on + strand, within MPMX20_00699at 721.495 kb on - strand, within MPMX20_00699at 721.603 kb on - strand, within MPMX20_00699at 721.683 kb on + strand, within MPMX20_00699at 721.714 kb on + strand, within MPMX20_00699at 721.725 kb on - strand, within MPMX20_00699at 721.820 kb on + strand, within MPMX20_00699at 721.820 kb on + strand, within MPMX20_00699at 721.828 kb on - strand, within MPMX20_00699at 721.830 kb on + strand, within MPMX20_00699at 721.830 kb on + strand, within MPMX20_00699at 721.872 kb on - strandat 721.882 kb on - strandat 721.943 kb on + strandat 721.944 kb on + strandat 721.999 kb on + strandat 722.009 kb on + strandat 722.017 kb on - strandat 722.149 kb on + strand, within MPMX20_00700at 722.227 kb on + strand, within MPMX20_00700at 722.232 kb on + strand, within MPMX20_00700at 722.235 kb on - strand, within MPMX20_00700at 722.235 kb on - strand, within MPMX20_00700at 722.235 kb on - strand, within MPMX20_00700at 722.248 kb on - strand, within MPMX20_00700at 722.249 kb on + strand, within MPMX20_00700at 722.281 kb on - strand, within MPMX20_00700at 722.381 kb on + strandat 722.381 kb on + strandat 722.389 kb on - strandat 722.459 kb on + strand, within MPMX20_00701at 722.606 kb on + strand, within MPMX20_00701at 722.614 kb on - strand, within MPMX20_00701at 722.623 kb on + strand, within MPMX20_00701at 722.631 kb on - strand, within MPMX20_00701at 722.631 kb on - strand, within MPMX20_00701at 722.631 kb on - strand, within MPMX20_00701at 722.631 kb on - strand, within MPMX20_00701at 722.631 kb on - strand, within MPMX20_00701at 722.633 kb on + strand, within MPMX20_00701at 722.633 kb on + strand, within MPMX20_00701at 722.659 kb on - strand, within MPMX20_00701at 722.725 kb on + strand, within MPMX20_00701at 722.725 kb on + strand, within MPMX20_00701at 722.725 kb on + strand, within MPMX20_00701at 722.794 kb on - strand, within MPMX20_00701at 722.912 kb on + strandat 722.974 kb on + strandat 722.974 kb on + strandat 722.975 kb on - strandat 722.981 kb on - strandat 722.994 kb on + strandat 723.010 kb on - strandat 723.012 kb on - strandat 723.012 kb on - strandat 723.067 kb on - strand, within MPMX20_00702at 723.079 kb on - strand, within MPMX20_00702at 723.124 kb on - strand, within MPMX20_00702at 723.137 kb on - strand, within MPMX20_00702at 723.152 kb on + strand, within MPMX20_00702at 723.172 kb on + strand, within MPMX20_00702at 723.210 kb on + strand, within MPMX20_00702at 723.214 kb on + strand, within MPMX20_00702at 723.214 kb on + strand, within MPMX20_00702at 723.214 kb on + strand, within MPMX20_00702at 723.214 kb on + strand, within MPMX20_00702at 723.214 kb on + strand, within MPMX20_00702at 723.214 kb on + strand, within MPMX20_00702at 723.222 kb on - strand, within MPMX20_00702at 723.222 kb on - strand, within MPMX20_00702at 723.282 kb on - strand, within MPMX20_00702at 723.286 kb on + strand, within MPMX20_00702at 723.286 kb on + strand, within MPMX20_00702at 723.294 kb on - strand, within MPMX20_00702

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Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001
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721,160 + MPMX20_00699 0.55 -0.1
721,272 + MPMX20_00699 0.61 -2.2
721,397 + MPMX20_00699 0.68 -1.2
721,415 - MPMX20_00699 0.69 +0.8
721,416 - MPMX20_00699 0.69 +0.7
721,422 - MPMX20_00699 0.69 +1.7
721,455 + MPMX20_00699 0.71 -1.5
721,487 + MPMX20_00699 0.72 +0.5
721,487 + MPMX20_00699 0.72 -1.6
721,495 - MPMX20_00699 0.73 -2.1
721,603 - MPMX20_00699 0.78 -2.5
721,683 + MPMX20_00699 0.82 -2.1
721,714 + MPMX20_00699 0.84 +2.2
721,725 - MPMX20_00699 0.85 +0.7
721,820 + MPMX20_00699 0.89 -0.5
721,820 + MPMX20_00699 0.89 -1.7
721,828 - MPMX20_00699 0.90 -3.1
721,830 + MPMX20_00699 0.90 -3.7
721,830 + MPMX20_00699 0.90 +0.2
721,872 - +0.7
721,882 - +1.0
721,943 + -2.1
721,944 + +0.5
721,999 + +1.3
722,009 + -0.5
722,017 - -1.1
722,149 + MPMX20_00700 0.21 +0.9
722,227 + MPMX20_00700 0.45 +0.3
722,232 + MPMX20_00700 0.46 -0.4
722,235 - MPMX20_00700 0.47 -1.9
722,235 - MPMX20_00700 0.47 -0.5
722,235 - MPMX20_00700 0.47 -1.7
722,248 - MPMX20_00700 0.51 +2.1
722,249 + MPMX20_00700 0.51 +1.6
722,281 - MPMX20_00700 0.61 -1.2
722,381 + -0.6
722,381 + -0.3
722,389 - -2.1
722,459 + MPMX20_00701 0.11 +2.7
722,606 + MPMX20_00701 0.40 +0.1
722,614 - MPMX20_00701 0.41 -0.1
722,623 + MPMX20_00701 0.43 +1.5
722,631 - MPMX20_00701 0.45 -1.2
722,631 - MPMX20_00701 0.45 +2.0
722,631 - MPMX20_00701 0.45 +1.5
722,631 - MPMX20_00701 0.45 -0.9
722,631 - MPMX20_00701 0.45 -1.9
722,633 + MPMX20_00701 0.45 -0.5
722,633 + MPMX20_00701 0.45 +1.1
722,659 - MPMX20_00701 0.50 +0.6
722,725 + MPMX20_00701 0.63 -1.5
722,725 + MPMX20_00701 0.63 +0.1
722,725 + MPMX20_00701 0.63 +1.1
722,794 - MPMX20_00701 0.76 -2.2
722,912 + -1.9
722,974 + -1.9
722,974 + -0.8
722,975 - -1.1
722,981 - -1.7
722,994 + +0.4
723,010 - +0.7
723,012 - +0.6
723,012 - -4.4
723,067 - MPMX20_00702 0.16 +1.6
723,079 - MPMX20_00702 0.17 +1.0
723,124 - MPMX20_00702 0.24 +3.2
723,137 - MPMX20_00702 0.26 +0.8
723,152 + MPMX20_00702 0.29 -0.1
723,172 + MPMX20_00702 0.32 -3.4
723,210 + MPMX20_00702 0.38 -0.5
723,214 + MPMX20_00702 0.38 +2.6
723,214 + MPMX20_00702 0.38 -4.5
723,214 + MPMX20_00702 0.38 +0.6
723,214 + MPMX20_00702 0.38 +1.0
723,214 + MPMX20_00702 0.38 -0.4
723,214 + MPMX20_00702 0.38 -2.6
723,222 - MPMX20_00702 0.40 -0.6
723,222 - MPMX20_00702 0.40 +2.1
723,282 - MPMX20_00702 0.49 +2.4
723,286 + MPMX20_00702 0.49 +1.3
723,286 + MPMX20_00702 0.49 -0.0
723,294 - MPMX20_00702 0.51 -0.2

Or see this region's nucleotide sequence