Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02766

Experiment: AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.01

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02764 and MPMX20_02765 overlap by 4 nucleotidesMPMX20_02765 and MPMX20_02766 are separated by 39 nucleotidesMPMX20_02766 and MPMX20_02767 are separated by 8 nucleotidesMPMX20_02767 and MPMX20_02768 are separated by 80 nucleotides MPMX20_02764: MPMX20_02764 - Zinc import ATP-binding protein ZnuC, at 2,920,109 to 2,920,864 _02764 MPMX20_02765: MPMX20_02765 - High-affinity zinc uptake system membrane protein ZnuB, at 2,920,861 to 2,921,646 _02765 MPMX20_02766: MPMX20_02766 - Holliday junction ATP-dependent DNA helicase RuvB, at 2,921,686 to 2,922,696 _02766 MPMX20_02767: MPMX20_02767 - Holliday junction ATP-dependent DNA helicase RuvA, at 2,922,705 to 2,923,316 _02767 MPMX20_02768: MPMX20_02768 - Crossover junction endodeoxyribonuclease RuvC, at 2,923,397 to 2,923,918 _02768 Position (kb) 2921 2922 2923Strain fitness (log2 ratio) -2 -1 0 1 2at 2920.687 kb on - strand, within MPMX20_02764at 2920.707 kb on + strand, within MPMX20_02764at 2920.724 kb on - strand, within MPMX20_02764at 2920.778 kb on - strand, within MPMX20_02764at 2920.895 kb on + strandat 2920.903 kb on - strandat 2920.903 kb on - strandat 2920.982 kb on + strand, within MPMX20_02765at 2921.000 kb on + strand, within MPMX20_02765at 2921.000 kb on + strand, within MPMX20_02765at 2921.068 kb on + strand, within MPMX20_02765at 2921.078 kb on - strand, within MPMX20_02765at 2921.150 kb on + strand, within MPMX20_02765at 2921.430 kb on + strand, within MPMX20_02765at 2921.550 kb on - strand, within MPMX20_02765at 2921.593 kb on - strandat 2921.595 kb on - strandat 2921.650 kb on + strandat 2921.663 kb on - strandat 2921.675 kb on + strandat 2921.778 kb on + strandat 2921.778 kb on + strandat 2921.893 kb on - strand, within MPMX20_02766at 2921.903 kb on - strand, within MPMX20_02766at 2922.050 kb on - strand, within MPMX20_02766at 2922.194 kb on - strand, within MPMX20_02766at 2922.335 kb on + strand, within MPMX20_02766at 2922.355 kb on - strand, within MPMX20_02766at 2922.389 kb on - strand, within MPMX20_02766at 2922.389 kb on - strand, within MPMX20_02766at 2922.389 kb on - strand, within MPMX20_02766at 2922.391 kb on + strand, within MPMX20_02766at 2922.440 kb on - strand, within MPMX20_02766at 2922.458 kb on - strand, within MPMX20_02766at 2922.491 kb on + strand, within MPMX20_02766at 2922.626 kb on - strandat 2922.881 kb on + strand, within MPMX20_02767at 2922.892 kb on + strand, within MPMX20_02767at 2922.900 kb on - strand, within MPMX20_02767at 2922.916 kb on + strand, within MPMX20_02767at 2922.916 kb on + strand, within MPMX20_02767at 2922.979 kb on + strand, within MPMX20_02767at 2922.987 kb on - strand, within MPMX20_02767at 2923.001 kb on - strand, within MPMX20_02767at 2923.034 kb on - strand, within MPMX20_02767at 2923.158 kb on - strand, within MPMX20_02767at 2923.242 kb on + strand, within MPMX20_02767at 2923.268 kb on - strandat 2923.331 kb on - strandat 2923.407 kb on - strandat 2923.447 kb on - strandat 2923.447 kb on - strandat 2923.471 kb on + strand, within MPMX20_02768at 2923.479 kb on - strand, within MPMX20_02768at 2923.526 kb on + strand, within MPMX20_02768at 2923.526 kb on + strand, within MPMX20_02768at 2923.532 kb on - strand, within MPMX20_02768

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.01
remove
2,920,687 - MPMX20_02764 0.76 +0.1
2,920,707 + MPMX20_02764 0.79 -0.1
2,920,724 - MPMX20_02764 0.81 -1.8
2,920,778 - MPMX20_02764 0.88 +0.7
2,920,895 + -0.2
2,920,903 - -0.5
2,920,903 - +0.4
2,920,982 + MPMX20_02765 0.15 +0.4
2,921,000 + MPMX20_02765 0.18 -1.1
2,921,000 + MPMX20_02765 0.18 -1.5
2,921,068 + MPMX20_02765 0.26 +2.7
2,921,078 - MPMX20_02765 0.28 -1.2
2,921,150 + MPMX20_02765 0.37 -0.7
2,921,430 + MPMX20_02765 0.72 -0.6
2,921,550 - MPMX20_02765 0.88 -0.9
2,921,593 - -1.5
2,921,595 - -0.6
2,921,650 + +0.7
2,921,663 - -0.1
2,921,675 + -0.4
2,921,778 + -1.4
2,921,778 + +1.1
2,921,893 - MPMX20_02766 0.20 -1.1
2,921,903 - MPMX20_02766 0.21 -2.6
2,922,050 - MPMX20_02766 0.36 -0.1
2,922,194 - MPMX20_02766 0.50 -0.3
2,922,335 + MPMX20_02766 0.64 +0.1
2,922,355 - MPMX20_02766 0.66 -0.3
2,922,389 - MPMX20_02766 0.70 -1.3
2,922,389 - MPMX20_02766 0.70 -1.2
2,922,389 - MPMX20_02766 0.70 -1.3
2,922,391 + MPMX20_02766 0.70 -1.8
2,922,440 - MPMX20_02766 0.75 -0.1
2,922,458 - MPMX20_02766 0.76 -0.8
2,922,491 + MPMX20_02766 0.80 -2.5
2,922,626 - -0.2
2,922,881 + MPMX20_02767 0.29 +1.1
2,922,892 + MPMX20_02767 0.31 -1.9
2,922,900 - MPMX20_02767 0.32 -1.5
2,922,916 + MPMX20_02767 0.34 +0.5
2,922,916 + MPMX20_02767 0.34 -2.7
2,922,979 + MPMX20_02767 0.45 +0.1
2,922,987 - MPMX20_02767 0.46 -0.6
2,923,001 - MPMX20_02767 0.48 -0.8
2,923,034 - MPMX20_02767 0.54 -1.0
2,923,158 - MPMX20_02767 0.74 -2.6
2,923,242 + MPMX20_02767 0.88 -2.5
2,923,268 - -2.7
2,923,331 - -1.0
2,923,407 - -0.1
2,923,447 - -2.0
2,923,447 - -1.7
2,923,471 + MPMX20_02768 0.14 -1.9
2,923,479 - MPMX20_02768 0.16 -1.5
2,923,526 + MPMX20_02768 0.25 -0.3
2,923,526 + MPMX20_02768 0.25 -2.0
2,923,532 - MPMX20_02768 0.26 -2.1

Or see this region's nucleotide sequence