Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119260 and HMPREF1058_RS18910 are separated by 265 nucleotides HMPREF1058_RS18910 and HMPREF1058_RS18905 overlap by 4 nucleotides HMPREF1058_RS18905 and HMPREF1058_RS18900 are separated by 1 nucleotides HMPREF1058_RS18900 and HMPREF1058_RS18895 are separated by 11 nucleotides HMPREF1058_RS18895 and HMPREF1058_RS20200 overlap by 11 nucleotides
HMPREF1058_RS0119260: HMPREF1058_RS0119260 - hypothetical protein, at 48,894 to 49,088
_RS0119260
HMPREF1058_RS18910: HMPREF1058_RS18910 - hypothetical protein, at 49,354 to 50,091
_RS18910
HMPREF1058_RS18905: HMPREF1058_RS18905 - hypothetical protein, at 50,088 to 50,519
_RS18905
HMPREF1058_RS18900: HMPREF1058_RS18900 - hypothetical protein, at 50,521 to 50,706
_RS18900
HMPREF1058_RS18895: HMPREF1058_RS18895 - hypothetical protein, at 50,718 to 51,155
_RS18895
HMPREF1058_RS20200: HMPREF1058_RS20200 - HNH endonuclease, at 51,145 to 51,759
_RS20200
Position (kb) 50
51 Strain fitness (log2 ratio) -2
-1
0
1 at 49.099 kb on + strand at 49.140 kb on + strand at 49.196 kb on + strand at 49.196 kb on + strand at 49.217 kb on + strand at 49.246 kb on + strand at 49.246 kb on + strand at 49.369 kb on + strand at 49.598 kb on + strand, within HMPREF1058_RS18910 at 49.692 kb on + strand, within HMPREF1058_RS18910 at 49.838 kb on + strand, within HMPREF1058_RS18910 at 50.029 kb on + strand at 50.051 kb on + strand at 50.108 kb on + strand at 50.108 kb on + strand at 50.188 kb on + strand, within HMPREF1058_RS18905 at 50.244 kb on + strand, within HMPREF1058_RS18905 at 50.429 kb on + strand, within HMPREF1058_RS18905 at 50.429 kb on + strand, within HMPREF1058_RS18905 at 50.594 kb on + strand, within HMPREF1058_RS18900 at 50.758 kb on + strand at 50.798 kb on + strand, within HMPREF1058_RS18895 at 51.102 kb on + strand, within HMPREF1058_RS18895 at 51.123 kb on + strand at 51.146 kb on + strand at 51.278 kb on + strand, within HMPREF1058_RS20200 at 51.278 kb on + strand, within HMPREF1058_RS20200 at 51.278 kb on + strand, within HMPREF1058_RS20200 at 51.278 kb on + strand, within HMPREF1058_RS20200 at 51.360 kb on + strand, within HMPREF1058_RS20200 at 51.505 kb on + strand, within HMPREF1058_RS20200
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 49,099 + -0.7 49,140 + -0.2 49,196 + -0.7 49,196 + +0.2 49,217 + -0.5 49,246 + -2.0 49,246 + -1.7 49,369 + -1.1 49,598 + HMPREF1058_RS18910 0.33 +0.3 49,692 + HMPREF1058_RS18910 0.46 -0.0 49,838 + HMPREF1058_RS18910 0.66 +0.2 50,029 + +0.2 50,051 + -2.3 50,108 + +0.7 50,108 + -0.3 50,188 + HMPREF1058_RS18905 0.23 -1.2 50,244 + HMPREF1058_RS18905 0.36 -0.6 50,429 + HMPREF1058_RS18905 0.79 -0.0 50,429 + HMPREF1058_RS18905 0.79 -1.3 50,594 + HMPREF1058_RS18900 0.39 -0.3 50,758 + -0.6 50,798 + HMPREF1058_RS18895 0.18 -1.1 51,102 + HMPREF1058_RS18895 0.88 -1.6 51,123 + -1.0 51,146 + +0.4 51,278 + HMPREF1058_RS20200 0.22 -0.6 51,278 + HMPREF1058_RS20200 0.22 -0.1 51,278 + HMPREF1058_RS20200 0.22 +0.6 51,278 + HMPREF1058_RS20200 0.22 -0.3 51,360 + HMPREF1058_RS20200 0.35 -0.3 51,505 + HMPREF1058_RS20200 0.59 -0.9
Or see this region's nucleotide sequence