Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18315 and HMPREF1058_RS18310 are separated by 168 nucleotides HMPREF1058_RS18310 and HMPREF1058_RS18305 are separated by 20 nucleotides
HMPREF1058_RS18315: HMPREF1058_RS18315 - hypothetical protein, at 197,259 to 198,992
_RS18315
HMPREF1058_RS18310: HMPREF1058_RS18310 - RagB/SusD family nutrient uptake outer membrane protein, at 199,161 to 201,170
_RS18310
HMPREF1058_RS18305: HMPREF1058_RS18305 - TonB-dependent receptor, at 201,191 to 204,646
_RS18305
Position (kb) 199
200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 198.192 kb on + strand, within HMPREF1058_RS18315 at 198.217 kb on + strand, within HMPREF1058_RS18315 at 198.218 kb on - strand, within HMPREF1058_RS18315 at 198.218 kb on - strand, within HMPREF1058_RS18315 at 198.295 kb on + strand, within HMPREF1058_RS18315 at 198.296 kb on - strand, within HMPREF1058_RS18315 at 198.316 kb on + strand, within HMPREF1058_RS18315 at 198.316 kb on + strand, within HMPREF1058_RS18315 at 198.317 kb on - strand at 198.317 kb on - strand, within HMPREF1058_RS18315 at 198.317 kb on - strand at 198.321 kb on - strand, within HMPREF1058_RS18315 at 198.360 kb on - strand, within HMPREF1058_RS18315 at 198.360 kb on - strand, within HMPREF1058_RS18315 at 198.360 kb on - strand, within HMPREF1058_RS18315 at 198.469 kb on - strand, within HMPREF1058_RS18315 at 198.507 kb on - strand, within HMPREF1058_RS18315 at 198.507 kb on - strand, within HMPREF1058_RS18315 at 198.511 kb on - strand, within HMPREF1058_RS18315 at 198.550 kb on + strand, within HMPREF1058_RS18315 at 198.584 kb on + strand, within HMPREF1058_RS18315 at 198.615 kb on - strand, within HMPREF1058_RS18315 at 198.719 kb on + strand, within HMPREF1058_RS18315 at 198.719 kb on + strand, within HMPREF1058_RS18315 at 198.719 kb on + strand, within HMPREF1058_RS18315 at 198.719 kb on + strand, within HMPREF1058_RS18315 at 198.719 kb on + strand, within HMPREF1058_RS18315 at 198.997 kb on + strand at 199.022 kb on + strand at 199.025 kb on - strand at 199.098 kb on - strand at 199.117 kb on + strand at 199.118 kb on - strand at 199.129 kb on + strand at 199.143 kb on + strand at 199.199 kb on - strand at 199.245 kb on + strand at 199.246 kb on - strand at 199.270 kb on + strand at 199.391 kb on + strand, within HMPREF1058_RS18310 at 199.416 kb on + strand, within HMPREF1058_RS18310 at 199.416 kb on + strand, within HMPREF1058_RS18310 at 199.469 kb on - strand, within HMPREF1058_RS18310 at 199.490 kb on + strand, within HMPREF1058_RS18310 at 199.513 kb on - strand, within HMPREF1058_RS18310 at 199.533 kb on - strand, within HMPREF1058_RS18310 at 199.545 kb on - strand, within HMPREF1058_RS18310 at 199.568 kb on + strand, within HMPREF1058_RS18310 at 199.570 kb on + strand, within HMPREF1058_RS18310 at 199.612 kb on + strand, within HMPREF1058_RS18310 at 199.612 kb on + strand, within HMPREF1058_RS18310 at 199.613 kb on - strand, within HMPREF1058_RS18310 at 199.618 kb on - strand, within HMPREF1058_RS18310 at 199.817 kb on - strand, within HMPREF1058_RS18310 at 199.818 kb on + strand, within HMPREF1058_RS18310 at 199.819 kb on - strand, within HMPREF1058_RS18310 at 199.878 kb on - strand, within HMPREF1058_RS18310 at 199.882 kb on - strand, within HMPREF1058_RS18310 at 199.882 kb on - strand, within HMPREF1058_RS18310 at 199.994 kb on - strand, within HMPREF1058_RS18310 at 200.029 kb on + strand, within HMPREF1058_RS18310 at 200.101 kb on - strand, within HMPREF1058_RS18310 at 200.142 kb on - strand, within HMPREF1058_RS18310 at 200.376 kb on - strand at 200.412 kb on - strand, within HMPREF1058_RS18310 at 200.525 kb on + strand, within HMPREF1058_RS18310 at 200.649 kb on + strand, within HMPREF1058_RS18310 at 200.670 kb on + strand, within HMPREF1058_RS18310 at 200.670 kb on + strand, within HMPREF1058_RS18310 at 200.733 kb on + strand, within HMPREF1058_RS18310 at 200.807 kb on + strand, within HMPREF1058_RS18310 at 200.807 kb on + strand, within HMPREF1058_RS18310 at 200.810 kb on - strand, within HMPREF1058_RS18310 at 200.824 kb on - strand, within HMPREF1058_RS18310 at 200.825 kb on + strand, within HMPREF1058_RS18310 at 200.927 kb on + strand, within HMPREF1058_RS18310 at 201.001 kb on + strand at 201.025 kb on + strand at 201.025 kb on + strand at 201.027 kb on + strand at 201.027 kb on + strand at 201.027 kb on + strand at 201.028 kb on - strand at 201.028 kb on - strand at 201.070 kb on + strand at 201.071 kb on - strand at 201.079 kb on + strand at 201.149 kb on + strand at 201.149 kb on + strand at 201.150 kb on - strand at 201.151 kb on + strand at 201.153 kb on + strand at 201.153 kb on + strand at 201.154 kb on - strand at 201.200 kb on + strand at 201.201 kb on - strand at 201.238 kb on - strand at 201.259 kb on - strand at 201.259 kb on - strand at 201.259 kb on - strand at 201.262 kb on + strand at 201.262 kb on + strand at 201.265 kb on + strand at 201.266 kb on - strand at 201.307 kb on + strand at 201.387 kb on - strand at 201.478 kb on + strand at 201.497 kb on - strand at 201.623 kb on - strand, within HMPREF1058_RS18305 at 201.672 kb on + strand, within HMPREF1058_RS18305 at 201.672 kb on + strand, within HMPREF1058_RS18305 at 201.928 kb on + strand, within HMPREF1058_RS18305 at 201.943 kb on + strand, within HMPREF1058_RS18305 at 201.943 kb on + strand, within HMPREF1058_RS18305 at 201.951 kb on + strand, within HMPREF1058_RS18305 at 201.952 kb on - strand, within HMPREF1058_RS18305 at 201.952 kb on - strand, within HMPREF1058_RS18305 at 201.968 kb on - strand, within HMPREF1058_RS18305 at 201.998 kb on + strand, within HMPREF1058_RS18305 at 202.000 kb on + strand, within HMPREF1058_RS18305 at 202.003 kb on - strand, within HMPREF1058_RS18305 at 202.003 kb on - strand, within HMPREF1058_RS18305 at 202.070 kb on - strand, within HMPREF1058_RS18305 at 202.070 kb on - strand, within HMPREF1058_RS18305
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 198,192 + HMPREF1058_RS18315 0.54 +0.5 198,217 + HMPREF1058_RS18315 0.55 +0.0 198,218 - HMPREF1058_RS18315 0.55 +0.2 198,218 - HMPREF1058_RS18315 0.55 -0.5 198,295 + HMPREF1058_RS18315 0.60 -0.7 198,296 - HMPREF1058_RS18315 0.60 -0.5 198,316 + HMPREF1058_RS18315 0.61 -0.6 198,316 + HMPREF1058_RS18315 0.61 +0.5 198,317 - -0.5 198,317 - HMPREF1058_RS18315 0.61 +0.7 198,317 - +2.7 198,321 - HMPREF1058_RS18315 0.61 +0.2 198,360 - HMPREF1058_RS18315 0.63 -0.9 198,360 - HMPREF1058_RS18315 0.63 -0.1 198,360 - HMPREF1058_RS18315 0.63 -0.3 198,469 - HMPREF1058_RS18315 0.70 +0.5 198,507 - HMPREF1058_RS18315 0.72 -1.8 198,507 - HMPREF1058_RS18315 0.72 -0.7 198,511 - HMPREF1058_RS18315 0.72 -0.5 198,550 + HMPREF1058_RS18315 0.74 -1.2 198,584 + HMPREF1058_RS18315 0.76 -0.3 198,615 - HMPREF1058_RS18315 0.78 -0.6 198,719 + HMPREF1058_RS18315 0.84 +0.1 198,719 + HMPREF1058_RS18315 0.84 +0.4 198,719 + HMPREF1058_RS18315 0.84 -0.5 198,719 + HMPREF1058_RS18315 0.84 +0.7 198,719 + HMPREF1058_RS18315 0.84 -0.1 198,997 + +0.2 199,022 + +0.1 199,025 - -1.3 199,098 - -0.3 199,117 + -0.4 199,118 - +0.5 199,129 + -0.4 199,143 + -1.3 199,199 - -0.2 199,245 + -1.0 199,246 - +2.1 199,270 + +0.2 199,391 + HMPREF1058_RS18310 0.11 +0.5 199,416 + HMPREF1058_RS18310 0.13 -0.9 199,416 + HMPREF1058_RS18310 0.13 -1.5 199,469 - HMPREF1058_RS18310 0.15 +0.0 199,490 + HMPREF1058_RS18310 0.16 -0.6 199,513 - HMPREF1058_RS18310 0.18 -2.4 199,533 - HMPREF1058_RS18310 0.19 -0.8 199,545 - HMPREF1058_RS18310 0.19 -1.7 199,568 + HMPREF1058_RS18310 0.20 +0.8 199,570 + HMPREF1058_RS18310 0.20 -1.0 199,612 + HMPREF1058_RS18310 0.22 -1.6 199,612 + HMPREF1058_RS18310 0.22 -0.7 199,613 - HMPREF1058_RS18310 0.22 -1.5 199,618 - HMPREF1058_RS18310 0.23 -0.7 199,817 - HMPREF1058_RS18310 0.33 -0.3 199,818 + HMPREF1058_RS18310 0.33 -0.7 199,819 - HMPREF1058_RS18310 0.33 +0.3 199,878 - HMPREF1058_RS18310 0.36 -0.7 199,882 - HMPREF1058_RS18310 0.36 +0.3 199,882 - HMPREF1058_RS18310 0.36 -0.5 199,994 - HMPREF1058_RS18310 0.41 -1.4 200,029 + HMPREF1058_RS18310 0.43 -1.3 200,101 - HMPREF1058_RS18310 0.47 -0.9 200,142 - HMPREF1058_RS18310 0.49 -0.3 200,376 - -0.7 200,412 - HMPREF1058_RS18310 0.62 -2.7 200,525 + HMPREF1058_RS18310 0.68 -0.0 200,649 + HMPREF1058_RS18310 0.74 +2.1 200,670 + HMPREF1058_RS18310 0.75 -0.1 200,670 + HMPREF1058_RS18310 0.75 -0.7 200,733 + HMPREF1058_RS18310 0.78 +1.7 200,807 + HMPREF1058_RS18310 0.82 +0.1 200,807 + HMPREF1058_RS18310 0.82 -0.6 200,810 - HMPREF1058_RS18310 0.82 -0.3 200,824 - HMPREF1058_RS18310 0.83 -0.3 200,825 + HMPREF1058_RS18310 0.83 -0.3 200,927 + HMPREF1058_RS18310 0.88 -2.8 201,001 + -0.4 201,025 + -0.3 201,025 + +0.4 201,027 + +0.6 201,027 + -1.8 201,027 + -0.0 201,028 - +1.1 201,028 - +0.6 201,070 + +0.8 201,071 - +1.1 201,079 + +1.3 201,149 + +0.6 201,149 + +0.3 201,150 - +1.3 201,151 + -0.3 201,153 + -1.5 201,153 + -0.2 201,154 - +1.1 201,200 + +1.1 201,201 - -0.2 201,238 - -0.9 201,259 - -0.5 201,259 - +0.3 201,259 - -0.4 201,262 + +0.0 201,262 + +2.5 201,265 + +1.1 201,266 - -0.0 201,307 + +0.5 201,387 - -0.9 201,478 + +0.2 201,497 - -0.1 201,623 - HMPREF1058_RS18305 0.12 -0.9 201,672 + HMPREF1058_RS18305 0.14 +1.2 201,672 + HMPREF1058_RS18305 0.14 +0.4 201,928 + HMPREF1058_RS18305 0.21 -2.4 201,943 + HMPREF1058_RS18305 0.22 -1.6 201,943 + HMPREF1058_RS18305 0.22 +0.3 201,951 + HMPREF1058_RS18305 0.22 +0.5 201,952 - HMPREF1058_RS18305 0.22 -1.5 201,952 - HMPREF1058_RS18305 0.22 -0.7 201,968 - HMPREF1058_RS18305 0.22 -2.0 201,998 + HMPREF1058_RS18305 0.23 +0.1 202,000 + HMPREF1058_RS18305 0.23 +1.3 202,003 - HMPREF1058_RS18305 0.23 +0.2 202,003 - HMPREF1058_RS18305 0.23 -0.3 202,070 - HMPREF1058_RS18305 0.25 +2.1 202,070 - HMPREF1058_RS18305 0.25 -0.5
Or see this region's nucleotide sequence