Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17410 and HMPREF1058_RS17405 are separated by 49 nucleotides HMPREF1058_RS17405 and HMPREF1058_RS17400 are separated by 8 nucleotides
HMPREF1058_RS17410: HMPREF1058_RS17410 - undecaprenyl-phosphate glucose phosphotransferase, at 450,190 to 451,593
_RS17410
HMPREF1058_RS17405: HMPREF1058_RS17405 - polysaccharide export protein, at 451,643 to 452,434
_RS17405
HMPREF1058_RS17400: HMPREF1058_RS17400 - tyrosine-protein kinase, at 452,443 to 454,854
_RS17400
Position (kb) 451
452
453 Strain fitness (log2 ratio) -2
-1
0
1
2 at 450.869 kb on - strand, within HMPREF1058_RS17410 at 450.999 kb on - strand, within HMPREF1058_RS17410 at 451.053 kb on - strand, within HMPREF1058_RS17410 at 451.061 kb on + strand, within HMPREF1058_RS17410 at 451.062 kb on - strand, within HMPREF1058_RS17410 at 451.071 kb on + strand, within HMPREF1058_RS17410 at 451.071 kb on + strand, within HMPREF1058_RS17410 at 451.085 kb on + strand, within HMPREF1058_RS17410 at 451.085 kb on + strand, within HMPREF1058_RS17410 at 451.086 kb on - strand, within HMPREF1058_RS17410 at 451.174 kb on - strand, within HMPREF1058_RS17410 at 451.304 kb on + strand, within HMPREF1058_RS17410 at 451.305 kb on - strand, within HMPREF1058_RS17410 at 451.317 kb on + strand, within HMPREF1058_RS17410 at 451.318 kb on - strand, within HMPREF1058_RS17410 at 451.318 kb on - strand, within HMPREF1058_RS17410 at 451.318 kb on - strand, within HMPREF1058_RS17410 at 451.329 kb on - strand, within HMPREF1058_RS17410 at 451.366 kb on + strand at 451.388 kb on - strand, within HMPREF1058_RS17410 at 451.388 kb on - strand, within HMPREF1058_RS17410 at 451.499 kb on + strand at 451.499 kb on + strand at 451.504 kb on + strand at 451.539 kb on + strand at 451.540 kb on - strand at 451.542 kb on + strand at 451.624 kb on + strand at 451.625 kb on - strand at 451.740 kb on - strand, within HMPREF1058_RS17405 at 451.772 kb on + strand, within HMPREF1058_RS17405 at 451.773 kb on - strand, within HMPREF1058_RS17405 at 451.919 kb on + strand, within HMPREF1058_RS17405 at 452.030 kb on + strand, within HMPREF1058_RS17405 at 452.058 kb on + strand, within HMPREF1058_RS17405 at 452.059 kb on - strand, within HMPREF1058_RS17405 at 452.140 kb on + strand, within HMPREF1058_RS17405 at 452.141 kb on - strand, within HMPREF1058_RS17405 at 452.178 kb on + strand, within HMPREF1058_RS17405 at 452.179 kb on - strand, within HMPREF1058_RS17405 at 452.286 kb on - strand, within HMPREF1058_RS17405 at 452.286 kb on - strand, within HMPREF1058_RS17405 at 452.351 kb on - strand, within HMPREF1058_RS17405 at 452.443 kb on - strand at 452.553 kb on + strand at 452.584 kb on + strand at 452.584 kb on + strand at 452.963 kb on - strand, within HMPREF1058_RS17400 at 453.132 kb on + strand, within HMPREF1058_RS17400 at 453.133 kb on - strand, within HMPREF1058_RS17400
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 450,869 - HMPREF1058_RS17410 0.48 +0.8 450,999 - HMPREF1058_RS17410 0.58 +0.3 451,053 - HMPREF1058_RS17410 0.61 +0.7 451,061 + HMPREF1058_RS17410 0.62 +2.7 451,062 - HMPREF1058_RS17410 0.62 -0.5 451,071 + HMPREF1058_RS17410 0.63 +0.6 451,071 + HMPREF1058_RS17410 0.63 +0.6 451,085 + HMPREF1058_RS17410 0.64 +0.5 451,085 + HMPREF1058_RS17410 0.64 +0.6 451,086 - HMPREF1058_RS17410 0.64 -1.8 451,174 - HMPREF1058_RS17410 0.70 -0.3 451,304 + HMPREF1058_RS17410 0.79 +0.5 451,305 - HMPREF1058_RS17410 0.79 +0.7 451,317 + HMPREF1058_RS17410 0.80 +0.0 451,318 - HMPREF1058_RS17410 0.80 -0.4 451,318 - HMPREF1058_RS17410 0.80 +2.7 451,318 - HMPREF1058_RS17410 0.80 -0.3 451,329 - HMPREF1058_RS17410 0.81 -0.1 451,366 + -1.3 451,388 - HMPREF1058_RS17410 0.85 -1.3 451,388 - HMPREF1058_RS17410 0.85 +0.1 451,499 + -0.8 451,499 + -1.4 451,504 + +0.5 451,539 + +0.2 451,540 - -0.6 451,542 + +0.5 451,624 + +0.3 451,625 - -0.8 451,740 - HMPREF1058_RS17405 0.12 -0.0 451,772 + HMPREF1058_RS17405 0.16 +0.7 451,773 - HMPREF1058_RS17405 0.16 +0.0 451,919 + HMPREF1058_RS17405 0.35 -1.1 452,030 + HMPREF1058_RS17405 0.49 -0.2 452,058 + HMPREF1058_RS17405 0.52 -0.7 452,059 - HMPREF1058_RS17405 0.53 -1.5 452,140 + HMPREF1058_RS17405 0.63 -1.4 452,141 - HMPREF1058_RS17405 0.63 -2.1 452,178 + HMPREF1058_RS17405 0.68 -1.0 452,179 - HMPREF1058_RS17405 0.68 -0.3 452,286 - HMPREF1058_RS17405 0.81 +0.0 452,286 - HMPREF1058_RS17405 0.81 -1.7 452,351 - HMPREF1058_RS17405 0.89 -0.3 452,443 - -0.3 452,553 + -0.0 452,584 + +0.9 452,584 + +0.6 452,963 - HMPREF1058_RS17400 0.22 -0.5 453,132 + HMPREF1058_RS17400 0.29 +0.0 453,133 - HMPREF1058_RS17400 0.29 -1.0
Or see this region's nucleotide sequence